mRNA_Ecto-sp13_S_contig1861.5831.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1861.5831.1
Unique NamemRNA_Ecto-sp13_S_contig1861.5831.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1861.5831.1 vs. uniprot
Match: A0A6H5L6J2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6J2_9PHAE)

HSP 1 Score: 273 bits (697), Expect = 3.730e-84
Identity = 141/148 (95.27%), Postives = 142/148 (95.95%), Query Frame = 1 
Query:    1 MVKSVQAVLGGNGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLQRAWKGKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQACGRWLCYDDREVDVGGGGGRGSDFETVRRVNQLVRQ 444
            MVKSVQAVLGG GEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGL+RAWKGKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQA   W  YDDREVDVGGGGGRGSDFETVRRVNQLVRQ
Sbjct:  346 MVKSVQAVLGGTGEPGGLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLRRAWKGKKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQA---WREYDDREVDVGGGGGRGSDFETVRRVNQLVRQ 490
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BLAST of mRNA_Ecto-sp13_S_contig1861.5831.1 vs. uniprot
Match: A0A7S2AVJ1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AVJ1_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 4.970e-12
Identity = 46/103 (44.66%), Postives = 65/103 (63.11%), Query Frame = 1 
Query:   49 GLGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLQRAWKGKKG--DLDKAYRV-----DKDLAAAEAKRLIA-MEKRQEDDAYLLSREYDDDYDDQ 333
            GLG GFVEA L    +S   V+ AVL+D LPPQ+  ++R L R    +K   D+D  Y V     D D+   + ++LI  M++ +ED+A++LSREYDDD+DDQ
Sbjct:    1 GLGAGFVEAMLVFHDFSVARVVAAVLDDNLPPQLEGMDRKLGRYRVSRKDLKDIDAGYSVGSQARDDDVLREKQRQLIRNMDRDEEDNAWVLSREYDDDFDDQ 103
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BLAST of mRNA_Ecto-sp13_S_contig1861.5831.1 vs. uniprot
Match: A0A4D9DC10_9STRA (CUE domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC10_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.240e-10
Identity = 53/137 (38.69%), Postives = 74/137 (54.01%), Query Frame = 1 
Query:   49 GLGEGFVEACLSVLGWSPQGVIEAVLE-DRLPPQVANLNRGLQRAWKG----KKGDLDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDDDYDDQACGRWLCYDDREVDVGGGGGRGSDFETVRRVNQLVRQ 444
            GLGEGFV ACL+V+G++   V+ A+LE   LP  +  L+R L          KKG  +     D++  A +   L  MEK  E+DAYLL +EYDDD+DDQ  G    +  R+           DFE +R+ N L+R+
Sbjct:  433 GLGEGFVHACLAVMGYNINMVVNALLEGSALPYPLDTLDRSLPSPLGADKLRKKGREEAEEARDEEFIARQKAYLRQMEKDAEEDAYLL-QEYDDDFDDQYAGEQTMFS-RDTTR-------EDFEAIRKYNNLMRK 560
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BLAST of mRNA_Ecto-sp13_S_contig1861.5831.1 vs. uniprot
Match: A0A7S2BCH7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCH7_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.770e-5
Identity = 34/95 (35.79%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:   52 LGEGFVEACLSVLGWSPQGVIEAVLEDRLPPQVANLNRGLQR----AWKGKKGD--LDKAYRVDKDLAAAEAKRLIAMEKRQEDDAYLLSREYDD 318
            LGEGFVE CL+   +S + V+  +LED LPPQ+A+++R  +R      K ++G+  +    + D D A A+   L  ME+ + +    L  EY+D
Sbjct:    1 LGEGFVEVCLAFHDFSVETVVNKILEDDLPPQLADMDRTTKRFRVNMGKVERGNFTVGTTVKADDDFAQAQKAYLRQMEEEEHEKEAFLMAEYND 95
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1861.5831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5L6J2_9PHAE3.730e-8495.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2AVJ1_9STRA4.970e-1244.66Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9DC10_9STRA1.240e-1038.69CUE domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S2BCH7_9STRA1.770e-535.79Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1861contigEcto-sp13_S_contig1861:4285..7928 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size795
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionUBA-like
Ec32 orthologEc-23_002680.2
Cds size510
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1861.5831.1prot_Ecto-sp13_S_contig1861.5831.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1861 4285..5981 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.7580037-CDS-Ecto-sp13_S_contig1861:4284..45831681462954.7580037-CDS-Ecto-sp13_S_contig1861:4284..4583Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1861 4285..4583 -
1681462954.767915-CDS-Ecto-sp13_S_contig1861:5176..53161681462954.767915-CDS-Ecto-sp13_S_contig1861:5176..5316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1861 5177..5316 -
1681462954.777205-CDS-Ecto-sp13_S_contig1861:5910..59811681462954.777205-CDS-Ecto-sp13_S_contig1861:5910..5981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1861 5911..5981 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.7871265-UTR-Ecto-sp13_S_contig1861:5981..60781681462954.7871265-UTR-Ecto-sp13_S_contig1861:5981..6078Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1861 5982..6078 -
1681462954.7972462-UTR-Ecto-sp13_S_contig1861:6773..68541681462954.7972462-UTR-Ecto-sp13_S_contig1861:6773..6854Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1861 6774..6854 -
1681462954.806787-UTR-Ecto-sp13_S_contig1861:7823..79281681462954.806787-UTR-Ecto-sp13_S_contig1861:7823..7928Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1861 7824..7928 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1861.5831.1

>prot_Ecto-sp13_S_contig1861.5831.1 ID=prot_Ecto-sp13_S_contig1861.5831.1|Name=mRNA_Ecto-sp13_S_contig1861.5831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=170bp
MTPTSSPGSTTTTTTIRHVGGGFAMMTARSMWAAAAAAGPISRRCGGSTS
WFGRRRRKTPGGRTTKTPTSVSPLLKAGVGGQEAIESKEKRLKRKTHKDK
LLLPVAAAAAAAVEEAAGEADHPQGVEGETAAAAAAAATIDRGVGVEVGG
AGGGVVAAGGMEGARAEGGG
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mRNA from alignment at Ecto-sp13_S_contig1861:4285..7928-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1861.5831.1 ID=mRNA_Ecto-sp13_S_contig1861.5831.1|Name=mRNA_Ecto-sp13_S_contig1861.5831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3644bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1861:4285..7928- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGAAGAGCGTGCAGGCTGTGCTGGGGGGCAATGGGGAGCCCGGCGG
GCTCGGGGAAGGGTTTGTGGAGGCGTGCCTGTCGGTGCTCGGGTGGTCGC
CACAGGTGTGTTTTGTGTGTTTTGTGTTAGCGTCGACCACTCTAACCGGT
TAACCAATAAGAATGCATCGGTGCCAAGGGGTATGATCAGCGTGCCTGAA
AGGGGGCCGAAAATTTTGAAAAGGGCTCAACGTACGCAACATTCGTGTGT
TTTTTTTTTGTTTGCATCGACCGCGCTAACCGGATGACTAGTGAGAAGAC
GTCAGTCTCCTAGTGCGGCTGAAAACAGAAAGGTTTTTTGAAGGGAATGA
TCTGCGTGTGTCAAGAGGGGGGAGGGGGGGGAGGCGGGTGTACTTATAGT
CAGGGGGAGGGGGGGGATCGCGAAATAGGCGATCGCGTCCCACAAGCTAC
ACGCGCGTTGTTAAATAGTGGACCGGCGCTGTACCATATTGCCGGCGGCG
TGCCTGAAAGTGTGGCTTGTTTACCCCGCCGCAGTATTGTTGTAGTTTTC
TCTGCGTGTAGCGACCGACTGTCGCAGCAAGCCTCTCTGTTTACGCCCGT
TATGTTGCCTTGTCTTCGCGCCATCTTTTTGTCGACGTGGATACCTCGCC
GTCCCCTAGCCCGACCATGTTCCCGTCGAGCTCGAAATGCCGGTGCAAAC
GCCTCGGCAGTGCCGCCGCGACTACCGCCGAACACATACCTTATGTCTTC
CTGACTTGGAGCGGTTTCCTAGCTGAGTTCAACGCGAAATCGAAATGTAA
GACTGCACACCACAGATTCGCAGTAGTTTTTTTTTGTTCCGTTCGATATG
GTTTCTTCGCTGGGCTCGTGGAGTCTGAACAAACGTCGAGCTTGTGGGCT
GTTCGAGCTTGATAAACGTCACGGCCGGCAGTGGCTAGGCTTTTCGAGCT
TTCTATTTTTCATCATGCACCACCCCTTGTGACAACACTGCTGTGATTTC
GTGAGCCCGCTCAGGATCGCATACTTGCATGAAGCGTTTTTTTCGTTAAT
TTCTTTTTCGGACGCCTTCCCCAGGGAGTGATCGAGGCCGTCCTAGAGGA
CCGGTTGCCACCGCAAGTTGCCAACCTGAACCGTGGGCTGCAGCGGGCGT
GGAAGGTGATAAAAGTAGTAAGCCGCGTCCTCTTTGAATTGACCGATGTA
TGTAAGGTTTTTTCATGGTTGGAGACGCACCTTACCCTGGGCTGCTGCTG
CTGCTGCTGCTGCTGTGCGCTCTCTTTTGTTACCCTTTTCGCTGTGTGCC
ATGGTGTCATGTTGAAACTGCTGTTCCTCATGGGTGCATGAAAAACCATA
GCATTCCCCGGCTATGGGGCTTCGCTTTGCCTCCGTTGTGAGCGTGGCTT
TTTGAGGGGTAGGGACTGCCGTGGCAGAGGCTTGTGACAATTGACAATGA
ACACCTCATGCTTTGGAAGGATTCCGTCCCCCCTAGGCTTGAACTTTCCG
TACAAAATCAAGCAATCCCCACGCCTGTGTCCGTCGGTCCGTGTACAGTG
GTTGGGCTTCTTTTTTTTGTGCAACAAGGCACAAGAGAGCAGACGCCGCA
CGCATGAAAACGCATGAGTCCTTTGCCTTGCCTTGCATGCTGCTTGATTC
CATTCCTCTGTCGACCAAGTAGGCGGCGAAACTATTGACATGTGGTCCGA
TTTTCTTCGCGTACTGGCCAGGGGAGTTCCTTTTTTCCTGCCTGTAGACA
TACACGTACAATCCTAGAAAGACTATCGTTCTTTTTTTCCTTCTGTTTTT
GTCTGTCTCAGAGCTCCCCCGCCTCCGTCCCGCCGCTTTTTTTTTTTCAG
GGCAAGAAGGGAGACTTGGACAAGGCCTACCGCGTGGACAAGGACCTCGC
GGCCGCAGAGGCGAAGCGGCTCATCGCCATGGAGAAGCGGCAAGAGGATG
ACGCCTACCTCCTCTCCAGGGAGTACGACGACGACTACGACGATCAGGCA
TGTGGGCGGTGGCTTTGCGTCACCAACCCAACCCGTGCGCTGATGGCGTT
GTTGTCGTGGTTCTCTCTGTCCTGGTGATGTTGTCGTGGTTCTCTCTGTC
CTGGTGTTGTTGTCGTGGTTCTCTCTGTCCTGGTGTTGTTGTTGTGGTTC
TCTCTGTACTGGTGTTGTTGTTGTGGTTTCGGACGACATGTGTAGGTCGG
GAGAGACGACTCGTTTGTTGCAGGGGTGTTGCCTTCGTGCTTTCGTTGAT
GCTTCTCCCAGCAGTAGATGTGAGCTTCCGTCCCGGTTGTTGTTGTTGGT
GTTGTTGTTTTTGACTGGCGTGTCTCACCATGTCTGCGGGGGAGAAGCCT
CCTGTTCTATTCTTCATTTGGGGTGCCGTGCTGCGGTGCTTGTGTCCATG
TGGTCCCGCTCCTTCTTCGTGTGATTGCTGAGAAGCGCTGAACAGCAGGG
CGGGAGGTTTGCACACGACTATTTTCCAAAACACTCATACTTTGCACCTG
CTTTTTCCGGCTGGCATTTGTTTCCAAAAACTATCCCTTTCGTTCTTCGC
ACCGTTTCGTGGTTACTTCTGCTGCTTCTACTGGTGGTGGTTGTGCTGCT
GTTTCTCTGCAGTATGATGACCGCGAGGTCGATGTGGGCGGCGGCGGCGG
CCGCGGGTCCGATTTCGAGACGGTGCGGAGGGTCAACCAGCTGGTTCGGC
AGGAGGAGGAGGAAGACGCCTGGTGGGAGAACAACAAAAACACCAACCTC
AGGTTAGTCACCGGTGCCTACATGAAATCAAAGAACGCGCGTGTTTCTAT
GCGCCCGAGTTCGGCGTTCTGTTTCTTTCGTCATCACCATTCTCTCTGGT
GTAACAGCATGATGACGCGATTTTTCGTTTGCCGGCGAAAGCGAGTCGTG
GTTTGTTGGACGGGCACACCTGCGTGCCTTTTCCTGTCGCGCGCTGTCAG
GTGGAGAGGTGGAACCTTTAGTAGACGTGGCCGCACTCACCCCTACTATA
TACCAAAGGGCTTACAAAAAATGCAACAACCAGTAACCAGCAAGGACTTG
CTCCGGCCACACGATGCACGCCGGTGGGCCTCACCACACGAATGGACCGG
CTCTTGGCTGCTGTCCTGTCGAGCCGAAGATAATGCATACCAACAAGACG
GTACACACGCGCAAGGTTTTGGCGTTTACATACGCGCAATATTTCGGCTT
TTTTCGTCATCTGTCGGCCGATCGGCGAACCGGTCCCAGATGAAAACTTA
ACAGACAAGAGTGATTGTGCTGTACATGCCCACACGAGTGTACGCCCTAA
ACGCTCCCCCCCCCCCCTGAATCTATCGACGCTCTCTCTCCGCAGTGTCG
CCCCTCCTAAAGGCGGGGGTTGGCGGGCAAGAAGCCATAGAGAGCAAGGA
GAAGAGGCTGAAGAGAAAGACGCACAAGGACAAGCTTCTTCTGCCGGTGG
CGGCGGCCGCGGCGGCGGCGGTAGAGGAGGCGGCCGGGGAGGCGGACCAC
CCCCAGGGGGTAGAGGGCGAGACGGCGGCGGCCGCGGCGGCGGCGGCAAC
AATAGATCGGGGAGTAGGGGTAGAGGTAGGGGGGGCGGGCGGGGGCGTGG
TAGCGGCGGGAGGGATGGAGGGGGCGAGGGCCGAGGGGGGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1861:4285..7928-

>mRNA_Ecto-sp13_S_contig1861.5831.1 ID=mRNA_Ecto-sp13_S_contig1861.5831.1|Name=mRNA_Ecto-sp13_S_contig1861.5831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=510bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1861:4285..7928- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGCCTACCTCCTCTCCAGGGAGTACGACGACGACTACGACGATCAG
GCATGTGGGCGGTGGCTTTGCTATGATGACCGCGAGGTCGATGTGGGCGG
CGGCGGCGGCCGCGGGTCCGATTTCGAGACGGTGCGGAGGGTCAACCAGC
TGGTTCGGCAGGAGGAGGAGGAAGACGCCTGGTGGGAGAACAACAAAAAC
ACCAACCTCAGTGTCGCCCCTCCTAAAGGCGGGGGTTGGCGGGCAAGAAG
CCATAGAGAGCAAGGAGAAGAGGCTGAAGAGAAAGACGCACAAGGACAAG
CTTCTTCTGCCGGTGGCGGCGGCCGCGGCGGCGGCGGTAGAGGAGGCGGC
CGGGGAGGCGGACCACCCCCAGGGGGTAGAGGGCGAGACGGCGGCGGCCG
CGGCGGCGGCGGCAACAATAGATCGGGGAGTAGGGGTAGAGGTAGGGGGG
GCGGGCGGGGGCGTGGTAGCGGCGGGAGGGATGGAGGGGGCGAGGGCCGA
GGGGGGGGGG
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