mRNA_Ecto-sp13_S_contig18605.5828.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18605.5828.1
Unique NamemRNA_Ecto-sp13_S_contig18605.5828.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: D7FKX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX8_ECTSI)

HSP 1 Score: 532 bits (1371), Expect = 1.120e-183
Identity = 256/286 (89.51%), Postives = 269/286 (94.06%), Query Frame = 1
Query:  142 MSAATLEFEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
            MSAA  EF+EVWRWDGWTTLD+H NDGAVD DGNVVLVGSQGYAAAEDL+DDTF DAYSGDFAAVKL+GASGEVLWTWTASSLGSEAD+FLAVDTDSNND+VMGGRTEGYWSSSNPD++ HIAVVKLDGGTGDE+WRYQEHPPDSYTSLGSY YYG GSV GVAVDGDDNC LVGQTYG+LVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGES SFD+L +VKVDS GDLI VGIGGDEDAVNVVVVKF GTDGAVLWEYSPVTS THDVP SVD+DTQDDVYIA
Sbjct:    1 MSAAFPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEDLLDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADMFLAVDTDSNNDIVMGGRTEGYWSSSNPDSVAHIAVVKLDGGTGDEIWRYQEHPPDSYTSLGSYFYYGYGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESASFDSLHHVKVDSGGDLIVVGIGGDEDAVNVVVVKFSGTDGAVLWEYSPVTSSTHDVPASVDVDTQDDVYIA 286          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: D8LJC9_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC9_ECTSI)

HSP 1 Score: 525 bits (1351), Expect = 1.090e-181
Identity = 254/286 (88.81%), Postives = 266/286 (93.01%), Query Frame = 1
Query:  142 MSAATLEFEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
            MSAA  EF+EVWRWDGWTTLD+H NDGAVD DGNVVLVGSQGYAAAE  +DDTF DAYSGDFAAVKL+GASGEVLWTWTASSLGSEAD FLAVDTDSNND+VMGGRTEGYWSSSNPDT PHIAVVKLDGGTGDE+WRYQEHPPDSYTS G+ VY+G GSV GVAVDGDDNC LVGQTYG+LVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGES SFD+L +VKVDS GDLIAVGIGGDEDAVNVVVVKF GTDGAVLWEYSPVTS THDVP SVD+DTQDDVYIA
Sbjct:    1 MSAAIPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEYTIDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADTFLAVDTDSNNDIVMGGRTEGYWSSSNPDTTPHIAVVKLDGGTGDEIWRYQEHPPDSYTSWGNSVYHGLGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESASFDSLHHVKVDSGGDLIAVGIGGDEDAVNVVVVKFSGTDGAVLWEYSPVTSSTHDVPASVDVDTQDDVYIA 286          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A6H5KD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD80_9PHAE)

HSP 1 Score: 506 bits (1303), Expect = 2.360e-176
Identity = 245/286 (85.66%), Postives = 263/286 (91.96%), Query Frame = 1
Query:  142 MSAATLEFEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
            MS AT EF+EVWRWDGWTT D+    GAVDSDG+VVLVG+QGYAAAEDLVDDTF DAYSGDFAAVKL+GASGEVLWTWTASSLGSEAD+FLA DTDSNNDV+MGG TEGYWSSSN D++PH+A VKLDG TGDE+WRYQE PPDSYTSL S+ YYGSGSV+GVAVDGDDNCFL GQTYG+LV+GEGDPGDSDFFVIKLDGTDGSE+WTVQGGESTSFDA   VKVDS GDLIAVGIGGDEDAVNVVV KF GTDGAVLWEYSPVTSFTHDVP+SVD+DTQDDVYIA
Sbjct:    1 MSVATPEFDEVWRWDGWTTSDETLTHGAVDSDGDVVLVGTQGYAAAEDLVDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADVFLASDTDSNNDVIMGGTTEGYWSSSNHDSVPHLAAVKLDGSTGDEIWRYQERPPDSYTSLESFFYYGSGSVLGVAVDGDDNCFLAGQTYGSLVFGEGDPGDSDFFVIKLDGTDGSEMWTVQGGESTSFDAFHNVKVDSGGDLIAVGIGGDEDAVNVVV-KFSGTDGAVLWEYSPVTSFTHDVPQSVDVDTQDDVYIA 285          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: D8LJD0_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD0_ECTSI)

HSP 1 Score: 446 bits (1148), Expect = 6.070e-152
Identity = 211/247 (85.43%), Postives = 232/247 (93.93%), Query Frame = 1
Query:  259 SQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
            S+GYAAAEDL+DDTFEDAYSGDFAAVKLDGASG++LWTWT SSLGS ADLFLA DTDSN+DVVMGGRTEGYWSSSNPD++ H+A VKLDG TGDE+WRYQEHPPD+YTSLGSY YYGSGSV GVAVDGDDNCFLVGQT+G+LV+GEGD GDSDFFVIKLDGTDGSEIWTVQGGESTS+D    VKVDSAGDL+A+GIGGDEDA+NVVVVKF G DG++LWEYSPVTSFTHDVPESVD+DTQDDVY+A
Sbjct:   44 SRGYAAAEDLLDDTFEDAYSGDFAAVKLDGASGDLLWTWTDSSLGSAADLFLAGDTDSNDDVVMGGRTEGYWSSSNPDSVAHLAAVKLDGSTGDEIWRYQEHPPDTYTSLGSYFYYGSGSVTGVAVDGDDNCFLVGQTWGSLVFGEGDAGDSDFFVIKLDGTDGSEIWTVQGGESTSYDFFVDVKVDSAGDLVAIGIGGDEDAINVVVVKFSGIDGSILWEYSPVTSFTHDVPESVDVDTQDDVYLA 290          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A6H5JLD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD3_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 6.130e-73
Identity = 143/290 (49.31%), Postives = 180/290 (62.07%), Query Frame = 1
Query:  142 MSAATLE--FEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDA--VNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
            MS+  L   F E WR+ GWTT  + A  G V  DGN+VL G      A +L DDT     S DF+AVKLDG SGE LWTW  SSL   AD   +   DS ++V++GG T G W +SN D +  IA VKLDG  G E+WRYQ     +  S  S+  YG   V+GVAVD  D+  LVG TY NLV G G PGD DFF IKLDG  G E+W VQGG + + + L   KVDS+GDL+A G   +EDA  +N +VVK  G+DG+VLWEY+P ++ +  V  SVD+D ++ VY+A
Sbjct:    1 MSSTVLRAVFTESWRYAGWTTAQESAAGGVVGGDGNLVLCGKSN-GLAFNLDDDTATSTSSADFSAVKLDGDSGETLWTWVDSSLQG-ADWMTSAGADSASNVILGGFTNGEWGTSNLDGLRDIAAVKLDGEAGTEVWRYQ-----AAASTSSFGGYGVSYVLGVAVDSTDHPVLVGTTYNNLVDGVGVPGDWDFFAIKLDGMTGGELWRVQGGVAFTREGLLGAKVDSSGDLVAAGYAANEDASELNFLVVKLSGSDGSVLWEYAP-SAASGGVFHSVDLDDRNHVYVA 282          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A6H5LD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD60_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.030e-59
Identity = 112/209 (53.59%), Postives = 132/209 (63.16%), Query Frame = 1
Query:  370 TWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYI 996
            +WT SSLGSEAD+F A  TDSNN +++GGRTEGYWSSS P+    + +V          W     P  + T+                     +C   GQT G LVYGEGD GD DFF  KLDGTDGSEIWT QGG STSFD+ + V V+S GDL+AVGI GD  A+++ VVK  G DG VLWEYSPVTS THDVP SVD+D QDDV +
Sbjct:   46 SWTDSSLGSEADVFFAAATDSNNGIILGGRTEGYWSSSTPE----LCLV----------W-----PSTAKTTA--------------------SCS--GQTSGCLVYGEGDAGDCDFFATKLDGTDGSEIWTTQGGASTSFDSFREVVVESTGDLVAVGISGDVYAISIFVVKLSGIDGIVLWEYSPVTSLTHDVPHSVDVDAQDDVNV 213          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A2V7RZC4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7RZC4_9BACT)

HSP 1 Score: 76.3 bits (186), Expect = 9.060e-12
Identity = 69/207 (33.33%), Postives = 89/207 (43.00%), Query Frame = 1
Query:  322 DFAAVKLDGASGEVLWTWTASS---LGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPD-TIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIW--TVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAV--NVVVVKFGGTDGAVLW 918
            D+  +KL  ASG   W         LG  A   + VDT    DV+  G+T    S  + D  I ++ VVKL GG G  +WRY          L S     SG    V VD   +  + G T  N          SDF V KL G  G E+W  T+ G ++ + D    + VD  GD+IAVG   D  +       VK G +DG  LW
Sbjct:  170 DWIVLKLARASGAEKWRSVIRGGGVLGVNAAFAVVVDTAG--DVIAAGQTNSPTSGPHEDPAITNLTVVKLAGGDGRRIWRYD---------LTSAAVNASGLASAVQVDPTGDVIVSGVTGSN----PRTSAPSDFTVAKLAGRSGLELWRQTISGPDNGAAD----IAVDVNGDVIAVGQVADPGSTLATFAAVKLGSSDGRELW 357          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A0G2ZG16_9DELT (Branched-chain amino acid ABC transporter, amino acid-binding protein n=2 Tax=Archangium gephyra TaxID=48 RepID=A0A0G2ZG16_9DELT)

HSP 1 Score: 76.3 bits (186), Expect = 1.720e-11
Identity = 81/249 (32.53%), Postives = 108/249 (43.37%), Query Frame = 1
Query:  229 DSDGNVVLVGS-QGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMG----GRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGE---GDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVG-------IGG----DEDAVNVVVVKFGGTDGAVLW 918
            D+ GN++++G  QG          T  +    D   VKLD ASG VLW    +S GS   ++  V   S N +V G      T G  + SNP       VVKLDG TG  +W       D        V + S  V    VD   N  + G+  GNL  G      P   D FV+KLDG  G+ +W V    + S  +   V V+++G+LI          +GG    +    + VVVK  G  GAVLW
Sbjct:  791 DASGNLIVLGQFQGNLTVGGT---TLSNPEGTDGFVVKLDEASGAVLWLSHLNSNGSTY-IYTPVVDPSGNFIVSGEFYDNLTVGGTTLSNPRGTDGF-VVKLDGATGGLLWLSHLDSAD--------VSHASTPV----VDASGNLIVSGRFEGNLTVGGITLSSPTGYDGFVVKLDGGSGARLWLVHLDSTRSTYSAPLV-VEASGNLIVSDNFDGNFTVGGTTLSNSGGTDGVVVKLDGASGAVLW 1021          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A7C7JEC3_9FLAO (Uncharacterized protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7JEC3_9FLAO)

HSP 1 Score: 75.1 bits (183), Expect = 3.470e-11
Identity = 67/260 (25.77%), Postives = 119/260 (45.77%), Query Frame = 1
Query:  166 EEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEA-DLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIG-GD-----EDAVNVVVVKFGGTDGAVLWEY 924
            +++W W   ++ +D+    AVDS  +V +    GY          F D  + D   VKL G+ G ++W       G+ + D   ++  DSN+D+++GGRT   W S+   +   +   K+D   G  M+ YQ+   ++              V  +  + +++  + G T G+L       G  D F+ KL+G+D S + +VQ G + S D +  V VD   D+   G+  GD         ++ V+K  G+D + L+ +
Sbjct:  241 DQMWGWQNGSSTNDYTYGVAVDSQDDVYV---SGYTTGV-----WFGDIGNNDIIVVKLQGSDGSLIW---GERFGTTSLDYSSSLSIDSNDDLMIGGRTFSSWFSTIQGSFD-VFAFKVDSSNGSLMFGYQDGSSNNER------------VNDLIPNSNNDVIITGYTEGSLY--STSQGMDDIFLAKLNGSDFSVLNSVQNG-TNSVDQVNSVSVDLNDDIFITGLTYGDFFDDNSGGSDIFVMKVDGSDLSFLFGF 473          
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: D8LAU1_ECTSI (PEGA domain family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU1_ECTSI)

HSP 1 Score: 74.7 bits (182), Expect = 4.640e-11
Identity = 76/265 (28.68%), Postives = 110/265 (41.51%), Query Frame = 1
Query:  169 EVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDF--AAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVK--VDSAGDLIAVGIGGDEDAVNV----VVVKFGGTDGAVLWEYSPVTS 939
            E W W   T   D+ N   + SDG+ VL G      +  L + T  D        AA KLD A G +LW W       + + F A   +  + VV  G   G W  +    +   AV  LD  +G+ +W++Q+       S G  V YG+        D  ++  + G T GN  +   + G +DF  IKL+ TDGSE+W  Q G +  +D +  V    D  G ++     GD D  N       V     DG   W +   T+
Sbjct:    4 EEWYWQAGTAETDYLNAVLMGSDGSSVLAG-----LSFGLWNGTNADTSDASLRPAATKLD-ADGNILWKWQ-----HDINAFAAAAGEGRS-VVTAGFASGGWEGTGLGFVDFTAV-SLDADSGELLWKWQDG------SEGFDVIYGA-----TLADEGESVVMAGYTSGN--FSGVNAGSNDFVAIKLNFTDGSEVWRWQDG-TDEWDQIGAVAETADGTGFVLVGSTQGDWDGDNAGNGDFAVVMLDVDGNESWRWQDGTT 241          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKX8_ECTSI1.120e-18389.51Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D8LJC9_ECTSI1.090e-18188.81Fibronectin type III domain protein n=1 Tax=Ectoca... [more]
A0A6H5KD80_9PHAE2.360e-17685.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJD0_ECTSI6.070e-15285.43Fibronectin type III domain protein n=1 Tax=Ectoca... [more]
A0A6H5JLD3_9PHAE6.130e-7349.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5LD60_9PHAE6.030e-5953.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2V7RZC4_9BACT9.060e-1233.33Uncharacterized protein (Fragment) n=1 Tax=Gemmati... [more]
A0A0G2ZG16_9DELT1.720e-1132.53Branched-chain amino acid ABC transporter, amino a... [more]
A0A7C7JEC3_9FLAO3.470e-1125.77Uncharacterized protein (Fragment) n=1 Tax=Flavoba... [more]
D8LAU1_ECTSI4.640e-1128.68PEGA domain family protein n=1 Tax=Ectocarpus sili... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18605contigEcto-sp13_S_contig18605:1992..3417 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop0
Start0
Seed ortholog score68.6
Seed ortholog evalue6.5e-09
Seed eggNOG ortholog771875.Ferpe_0702
Model size1001
KEGG koko:K02014
KEGG TC1.B.14
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.cell adhesion involved in biofilm formation
EggNOG OGsCOG1470@1,COG1470@2,COG1520@1,COG1520@2
Cds size999
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.6195672-CDS-Ecto-sp13_S_contig18605:1992..29011681462954.6195672-CDS-Ecto-sp13_S_contig18605:1992..2901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18605 1993..2901 -
1681462954.6326666-CDS-Ecto-sp13_S_contig18605:3327..34171681462954.6326666-CDS-Ecto-sp13_S_contig18605:3327..3417Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18605 3328..3417 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18605.5828.1prot_Ecto-sp13_S_contig18605.5828.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18605 1993..3417 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18605.5828.1

>prot_Ecto-sp13_S_contig18605.5828.1 ID=prot_Ecto-sp13_S_contig18605.5828.1|Name=mRNA_Ecto-sp13_S_contig18605.5828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp
GLHVSDNFQEDPWVCIDPAVEVTERKGHQGVPSSGHVQAAGLPTVLVMSA
ATLEFEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDT
FEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVM
GGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYV
YYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDG
SEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGT
DGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA
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mRNA from alignment at Ecto-sp13_S_contig18605:1992..3417-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18605.5828.1 ID=mRNA_Ecto-sp13_S_contig18605.5828.1|Name=mRNA_Ecto-sp13_S_contig18605.5828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18605:1992..3417- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTACATGTCTCGGATAATTTTCAGGAAGACCCTTGGGTGTGCATAGA TCCCGCTGTCGAAGTGACCGAGAGGAAGGGTCATCAAGGGGTGAGGATGC ATGATGAAGATAAAAGTAGGCAGCAGGAACAACCCGCAGAAGCGGTGTGG CGTAAGGTCAACAGCTGACTAACACAGCTGACAGCAGACGACGTGTTGTT GTCTAAAACAGCCCAGCGAACCTACACGAACCAAAAACAACCAAACGCCG CCAACCAAGGATCAACAAATGTTTTTTCTCTCTGCTTGATCCGCATGCAT ACTTCTGTATGATCTGTACGTGATCTGTCTTCCCATGGGTGCCGCATACA GAATAGCTAATAATGTACGCGGACGACATTCACGTACACCATGGCATACG TGCAGGGCTTGTAATCTTTATGACATACAAAGCTGCACGTCGATGCTTAT GAGTCCTGCCGGCCAACGTTTTCATCATGGCAATCAATGAAACACTGCTT GCGTGTGTGTCCTCAGGTTCCTTCCTCTGGACACGTGCAGGCAGCAGGTT TGCCGACTGTTCTGGTGATGTCGGCAGCAACGCTTGAGTTCGAAGAGGTG TGGCGTTGGGACGGATGGACAACTCTTGATGACCATGCCAATGATGGTGC GGTCGACTCGGACGGCAATGTTGTTCTCGTGGGGTCACAAGGCTACGCGG CTGCAGAAGACCTTGTCGATGATACTTTCGAAGATGCCTATTCCGGAGAT TTCGCAGCCGTCAAGTTGGACGGCGCATCAGGCGAGGTGCTATGGACTTG GACAGCTTCCTCTTTGGGGAGCGAAGCAGATCTGTTTCTCGCGGTCGACA CCGACAGCAACAACGACGTCGTCATGGGAGGTCGAACGGAGGGGTACTGG TCATCGTCCAACCCCGACACCATTCCACATATAGCGGTCGTGAAGCTTGA TGGGGGTACGGGGGATGAGATGTGGAGGTACCAAGAACACCCTCCGGACT CGTACACGTCTTTGGGAAGCTATGTTTACTACGGTTCCGGCAGCGTGATA GGCGTGGCTGTCGACGGCGACGACAACTGCTTCTTGGTCGGCCAAACCTA TGGCAACCTGGTCTATGGTGAGGGTGACCCTGGAGATTCTGATTTCTTCG TCATCAAGCTAGACGGGACGGACGGCAGCGAAATCTGGACGGTGCAAGGC GGAGAGTCGACGAGCTTCGATGCATTGCAATACGTGAAGGTGGACTCGGC CGGAGATCTGATCGCCGTCGGCATCGGCGGAGACGAAGACGCAGTGAATG TTGTCGTGGTGAAGTTCGGCGGCACCGACGGCGCCGTTCTCTGGGAATAT TCGCCTGTCACGTCGTTCACTCATGACGTTCCCGAGTCGGTCGACATTGA CACCCAAGACGATGTGTATATTGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18605:1992..3417-

>mRNA_Ecto-sp13_S_contig18605.5828.1 ID=mRNA_Ecto-sp13_S_contig18605.5828.1|Name=mRNA_Ecto-sp13_S_contig18605.5828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18605:1992..3417- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCTACATGTCTCGGATAATTTTCAGGAAGACCCTTGGGTGTGCATAGA
TCCCGCTGTCGAAGTGACCGAGAGGAAGGGTCATCAAGGGGTTCCTTCCT
CTGGACACGTGCAGGCAGCAGGTTTGCCGACTGTTCTGGTGATGTCGGCA
GCAACGCTTGAGTTCGAAGAGGTGTGGCGTTGGGACGGATGGACAACTCT
TGATGACCATGCCAATGATGGTGCGGTCGACTCGGACGGCAATGTTGTTC
TCGTGGGGTCACAAGGCTACGCGGCTGCAGAAGACCTTGTCGATGATACT
TTCGAAGATGCCTATTCCGGAGATTTCGCAGCCGTCAAGTTGGACGGCGC
ATCAGGCGAGGTGCTATGGACTTGGACAGCTTCCTCTTTGGGGAGCGAAG
CAGATCTGTTTCTCGCGGTCGACACCGACAGCAACAACGACGTCGTCATG
GGAGGTCGAACGGAGGGGTACTGGTCATCGTCCAACCCCGACACCATTCC
ACATATAGCGGTCGTGAAGCTTGATGGGGGTACGGGGGATGAGATGTGGA
GGTACCAAGAACACCCTCCGGACTCGTACACGTCTTTGGGAAGCTATGTT
TACTACGGTTCCGGCAGCGTGATAGGCGTGGCTGTCGACGGCGACGACAA
CTGCTTCTTGGTCGGCCAAACCTATGGCAACCTGGTCTATGGTGAGGGTG
ACCCTGGAGATTCTGATTTCTTCGTCATCAAGCTAGACGGGACGGACGGC
AGCGAAATCTGGACGGTGCAAGGCGGAGAGTCGACGAGCTTCGATGCATT
GCAATACGTGAAGGTGGACTCGGCCGGAGATCTGATCGCCGTCGGCATCG
GCGGAGACGAAGACGCAGTGAATGTTGTCGTGGTGAAGTTCGGCGGCACC
GACGGCGCCGTTCTCTGGGAATATTCGCCTGTCACGTCGTTCACTCATGA
CGTTCCCGAGTCGGTCGACATTGACACCCAAGACGATGTGTATATTGCT
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