mRNA_Ecto-sp13_S_contig18605.5828.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: D7FKX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKX8_ECTSI) HSP 1 Score: 532 bits (1371), Expect = 1.120e-183 Identity = 256/286 (89.51%), Postives = 269/286 (94.06%), Query Frame = 1
Query: 142 MSAATLEFEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
MSAA EF+EVWRWDGWTTLD+H NDGAVD DGNVVLVGSQGYAAAEDL+DDTF DAYSGDFAAVKL+GASGEVLWTWTASSLGSEAD+FLAVDTDSNND+VMGGRTEGYWSSSNPD++ HIAVVKLDGGTGDE+WRYQEHPPDSYTSLGSY YYG GSV GVAVDGDDNC LVGQTYG+LVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGES SFD+L +VKVDS GDLI VGIGGDEDAVNVVVVKF GTDGAVLWEYSPVTS THDVP SVD+DTQDDVYIA
Sbjct: 1 MSAAFPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEDLLDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADMFLAVDTDSNNDIVMGGRTEGYWSSSNPDSVAHIAVVKLDGGTGDEIWRYQEHPPDSYTSLGSYFYYGYGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESASFDSLHHVKVDSGGDLIVVGIGGDEDAVNVVVVKFSGTDGAVLWEYSPVTSSTHDVPASVDVDTQDDVYIA 286
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: D8LJC9_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJC9_ECTSI) HSP 1 Score: 525 bits (1351), Expect = 1.090e-181 Identity = 254/286 (88.81%), Postives = 266/286 (93.01%), Query Frame = 1
Query: 142 MSAATLEFEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
MSAA EF+EVWRWDGWTTLD+H NDGAVD DGNVVLVGSQGYAAAE +DDTF DAYSGDFAAVKL+GASGEVLWTWTASSLGSEAD FLAVDTDSNND+VMGGRTEGYWSSSNPDT PHIAVVKLDGGTGDE+WRYQEHPPDSYTS G+ VY+G GSV GVAVDGDDNC LVGQTYG+LVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGES SFD+L +VKVDS GDLIAVGIGGDEDAVNVVVVKF GTDGAVLWEYSPVTS THDVP SVD+DTQDDVYIA
Sbjct: 1 MSAAIPEFDEVWRWDGWTTLDEHTNDGAVDLDGNVVLVGSQGYAAAEYTIDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADTFLAVDTDSNNDIVMGGRTEGYWSSSNPDTTPHIAVVKLDGGTGDEIWRYQEHPPDSYTSWGNSVYHGLGSVSGVAVDGDDNCLLVGQTYGSLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESASFDSLHHVKVDSGGDLIAVGIGGDEDAVNVVVVKFSGTDGAVLWEYSPVTSSTHDVPASVDVDTQDDVYIA 286
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A6H5KD80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD80_9PHAE) HSP 1 Score: 506 bits (1303), Expect = 2.360e-176 Identity = 245/286 (85.66%), Postives = 263/286 (91.96%), Query Frame = 1
Query: 142 MSAATLEFEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
MS AT EF+EVWRWDGWTT D+ GAVDSDG+VVLVG+QGYAAAEDLVDDTF DAYSGDFAAVKL+GASGEVLWTWTASSLGSEAD+FLA DTDSNNDV+MGG TEGYWSSSN D++PH+A VKLDG TGDE+WRYQE PPDSYTSL S+ YYGSGSV+GVAVDGDDNCFL GQTYG+LV+GEGDPGDSDFFVIKLDGTDGSE+WTVQGGESTSFDA VKVDS GDLIAVGIGGDEDAVNVVV KF GTDGAVLWEYSPVTSFTHDVP+SVD+DTQDDVYIA
Sbjct: 1 MSVATPEFDEVWRWDGWTTSDETLTHGAVDSDGDVVLVGTQGYAAAEDLVDDTFVDAYSGDFAAVKLEGASGEVLWTWTASSLGSEADVFLASDTDSNNDVIMGGTTEGYWSSSNHDSVPHLAAVKLDGSTGDEIWRYQERPPDSYTSLESFFYYGSGSVLGVAVDGDDNCFLAGQTYGSLVFGEGDPGDSDFFVIKLDGTDGSEMWTVQGGESTSFDAFHNVKVDSGGDLIAVGIGGDEDAVNVVV-KFSGTDGAVLWEYSPVTSFTHDVPQSVDVDTQDDVYIA 285
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: D8LJD0_ECTSI (Fibronectin type III domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD0_ECTSI) HSP 1 Score: 446 bits (1148), Expect = 6.070e-152 Identity = 211/247 (85.43%), Postives = 232/247 (93.93%), Query Frame = 1
Query: 259 SQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
S+GYAAAEDL+DDTFEDAYSGDFAAVKLDGASG++LWTWT SSLGS ADLFLA DTDSN+DVVMGGRTEGYWSSSNPD++ H+A VKLDG TGDE+WRYQEHPPD+YTSLGSY YYGSGSV GVAVDGDDNCFLVGQT+G+LV+GEGD GDSDFFVIKLDGTDGSEIWTVQGGESTS+D VKVDSAGDL+A+GIGGDEDA+NVVVVKF G DG++LWEYSPVTSFTHDVPESVD+DTQDDVY+A
Sbjct: 44 SRGYAAAEDLLDDTFEDAYSGDFAAVKLDGASGDLLWTWTDSSLGSAADLFLAGDTDSNDDVVMGGRTEGYWSSSNPDSVAHLAAVKLDGSTGDEIWRYQEHPPDTYTSLGSYFYYGSGSVTGVAVDGDDNCFLVGQTWGSLVFGEGDAGDSDFFVIKLDGTDGSEIWTVQGGESTSYDFFVDVKVDSAGDLVAIGIGGDEDAINVVVVKFSGIDGSILWEYSPVTSFTHDVPESVDVDTQDDVYLA 290
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A6H5JLD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLD3_9PHAE) HSP 1 Score: 246 bits (627), Expect = 6.130e-73 Identity = 143/290 (49.31%), Postives = 180/290 (62.07%), Query Frame = 1
Query: 142 MSAATLE--FEEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDA--VNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYIA 999
MS+ L F E WR+ GWTT + A G V DGN+VL G A +L DDT S DF+AVKLDG SGE LWTW SSL AD + DS ++V++GG T G W +SN D + IA VKLDG G E+WRYQ + S S+ YG V+GVAVD D+ LVG TY NLV G G PGD DFF IKLDG G E+W VQGG + + + L KVDS+GDL+A G +EDA +N +VVK G+DG+VLWEY+P ++ + V SVD+D ++ VY+A
Sbjct: 1 MSSTVLRAVFTESWRYAGWTTAQESAAGGVVGGDGNLVLCGKSN-GLAFNLDDDTATSTSSADFSAVKLDGDSGETLWTWVDSSLQG-ADWMTSAGADSASNVILGGFTNGEWGTSNLDGLRDIAAVKLDGEAGTEVWRYQ-----AAASTSSFGGYGVSYVLGVAVDSTDHPVLVGTTYNNLVDGVGVPGDWDFFAIKLDGMTGGELWRVQGGVAFTREGLLGAKVDSSGDLVAAGYAANEDASELNFLVVKLSGSDGSVLWEYAP-SAASGGVFHSVDLDDRNHVYVA 282
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A6H5LD60_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LD60_9PHAE) HSP 1 Score: 204 bits (518), Expect = 6.030e-59 Identity = 112/209 (53.59%), Postives = 132/209 (63.16%), Query Frame = 1
Query: 370 TWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAVNVVVVKFGGTDGAVLWEYSPVTSFTHDVPESVDIDTQDDVYI 996
+WT SSLGSEAD+F A TDSNN +++GGRTEGYWSSS P+ + +V W P + T+ +C GQT G LVYGEGD GD DFF KLDGTDGSEIWT QGG STSFD+ + V V+S GDL+AVGI GD A+++ VVK G DG VLWEYSPVTS THDVP SVD+D QDDV +
Sbjct: 46 SWTDSSLGSEADVFFAAATDSNNGIILGGRTEGYWSSSTPE----LCLV----------W-----PSTAKTTA--------------------SCS--GQTSGCLVYGEGDAGDCDFFATKLDGTDGSEIWTTQGGASTSFDSFREVVVESTGDLVAVGISGDVYAISIFVVKLSGIDGIVLWEYSPVTSLTHDVPHSVDVDAQDDVNV 213
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A2V7RZC4_9BACT (Uncharacterized protein (Fragment) n=1 Tax=Gemmatimonadetes bacterium TaxID=2026742 RepID=A0A2V7RZC4_9BACT) HSP 1 Score: 76.3 bits (186), Expect = 9.060e-12 Identity = 69/207 (33.33%), Postives = 89/207 (43.00%), Query Frame = 1
Query: 322 DFAAVKLDGASGEVLWTWTASS---LGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPD-TIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIW--TVQGGESTSFDALQYVKVDSAGDLIAVGIGGDEDAV--NVVVVKFGGTDGAVLW 918
D+ +KL ASG W LG A + VDT DV+ G+T S + D I ++ VVKL GG G +WRY L S SG V VD + + G T N SDF V KL G G E+W T+ G ++ + D + VD GD+IAVG D + VK G +DG LW
Sbjct: 170 DWIVLKLARASGAEKWRSVIRGGGVLGVNAAFAVVVDTAG--DVIAAGQTNSPTSGPHEDPAITNLTVVKLAGGDGRRIWRYD---------LTSAAVNASGLASAVQVDPTGDVIVSGVTGSN----PRTSAPSDFTVAKLAGRSGLELWRQTISGPDNGAAD----IAVDVNGDVIAVGQVADPGSTLATFAAVKLGSSDGRELW 357
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A0G2ZG16_9DELT (Branched-chain amino acid ABC transporter, amino acid-binding protein n=2 Tax=Archangium gephyra TaxID=48 RepID=A0A0G2ZG16_9DELT) HSP 1 Score: 76.3 bits (186), Expect = 1.720e-11 Identity = 81/249 (32.53%), Postives = 108/249 (43.37%), Query Frame = 1
Query: 229 DSDGNVVLVGS-QGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMG----GRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGE---GDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVG-------IGG----DEDAVNVVVVKFGGTDGAVLW 918
D+ GN++++G QG T + D VKLD ASG VLW +S GS ++ V S N +V G T G + SNP VVKLDG TG +W D V + S V VD N + G+ GNL G P D FV+KLDG G+ +W V + S + V V+++G+LI +GG + + VVVK G GAVLW
Sbjct: 791 DASGNLIVLGQFQGNLTVGGT---TLSNPEGTDGFVVKLDEASGAVLWLSHLNSNGSTY-IYTPVVDPSGNFIVSGEFYDNLTVGGTTLSNPRGTDGF-VVKLDGATGGLLWLSHLDSAD--------VSHASTPV----VDASGNLIVSGRFEGNLTVGGITLSSPTGYDGFVVKLDGGSGARLWLVHLDSTRSTYSAPLV-VEASGNLIVSDNFDGNFTVGGTTLSNSGGTDGVVVKLDGASGAVLW 1021
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: A0A7C7JEC3_9FLAO (Uncharacterized protein (Fragment) n=1 Tax=Flavobacteriales bacterium TaxID=2021391 RepID=A0A7C7JEC3_9FLAO) HSP 1 Score: 75.1 bits (183), Expect = 3.470e-11 Identity = 67/260 (25.77%), Postives = 119/260 (45.77%), Query Frame = 1
Query: 166 EEVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDFAAVKLDGASGEVLWTWTASSLGSEA-DLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVKVDSAGDLIAVGIG-GD-----EDAVNVVVVKFGGTDGAVLWEY 924
+++W W ++ +D+ AVDS +V + GY F D + D VKL G+ G ++W G+ + D ++ DSN+D+++GGRT W S+ + + K+D G M+ YQ+ ++ V + + +++ + G T G+L G D F+ KL+G+D S + +VQ G + S D + V VD D+ G+ GD ++ V+K G+D + L+ +
Sbjct: 241 DQMWGWQNGSSTNDYTYGVAVDSQDDVYV---SGYTTGV-----WFGDIGNNDIIVVKLQGSDGSLIW---GERFGTTSLDYSSSLSIDSNDDLMIGGRTFSSWFSTIQGSFD-VFAFKVDSSNGSLMFGYQDGSSNNER------------VNDLIPNSNNDVIITGYTEGSLY--STSQGMDDIFLAKLNGSDFSVLNSVQNG-TNSVDQVNSVSVDLNDDIFITGLTYGDFFDDNSGGSDIFVMKVDGSDLSFLFGF 473
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Match: D8LAU1_ECTSI (PEGA domain family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAU1_ECTSI) HSP 1 Score: 74.7 bits (182), Expect = 4.640e-11 Identity = 76/265 (28.68%), Postives = 110/265 (41.51%), Query Frame = 1
Query: 169 EVWRWDGWTTLDDHANDGAVDSDGNVVLVGSQGYAAAEDLVDDTFEDAYSGDF--AAVKLDGASGEVLWTWTASSLGSEADLFLAVDTDSNNDVVMGGRTEGYWSSSNPDTIPHIAVVKLDGGTGDEMWRYQEHPPDSYTSLGSYVYYGSGSVIGVAVDGDDNCFLVGQTYGNLVYGEGDPGDSDFFVIKLDGTDGSEIWTVQGGESTSFDALQYVK--VDSAGDLIAVGIGGDEDAVNV----VVVKFGGTDGAVLWEYSPVTS 939
E W W T D+ N + SDG+ VL G + L + T D AA KLD A G +LW W + + F A + + VV G G W + + AV LD +G+ +W++Q+ S G V YG+ D ++ + G T GN + + G +DF IKL+ TDGSE+W Q G + +D + V D G ++ GD D N V DG W + T+
Sbjct: 4 EEWYWQAGTAETDYLNAVLMGSDGSSVLAG-----LSFGLWNGTNADTSDASLRPAATKLD-ADGNILWKWQ-----HDINAFAAAAGEGRS-VVTAGFASGGWEGTGLGFVDFTAV-SLDADSGELLWKWQDG------SEGFDVIYGA-----TLADEGESVVMAGYTSGN--FSGVNAGSNDFVAIKLNFTDGSEVWRWQDG-TDEWDQIGAVAETADGTGFVLVGSTQGDWDGDNAGNGDFAVVMLDVDGNESWRWQDGTT 241 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18605.5828.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18605.5828.1 >prot_Ecto-sp13_S_contig18605.5828.1 ID=prot_Ecto-sp13_S_contig18605.5828.1|Name=mRNA_Ecto-sp13_S_contig18605.5828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=333bp GLHVSDNFQEDPWVCIDPAVEVTERKGHQGVPSSGHVQAAGLPTVLVMSAback to top mRNA from alignment at Ecto-sp13_S_contig18605:1992..3417- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18605.5828.1 ID=mRNA_Ecto-sp13_S_contig18605.5828.1|Name=mRNA_Ecto-sp13_S_contig18605.5828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1426bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18605:1992..3417- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18605:1992..3417- >mRNA_Ecto-sp13_S_contig18605.5828.1 ID=mRNA_Ecto-sp13_S_contig18605.5828.1|Name=mRNA_Ecto-sp13_S_contig18605.5828.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18605:1992..3417- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |