mRNA_Ecto-sp13_S_contig18603.5827.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18603.5827.1
Unique NamemRNA_Ecto-sp13_S_contig18603.5827.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE)

HSP 1 Score: 156 bits (394), Expect = 2.340e-43
Identity = 77/88 (87.50%), Postives = 78/88 (88.64%), Query Frame = -2
Query:  183 ITVQRAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLIN 446
             TVQRAAQRNSRNRAAGT ETKCVEV KEVFKRKVVDEV PAIKARWPGGRGRT +IQ DN PSHRI ADPDVVAAG AD WDIRLIN
Sbjct:   97 FTVQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLIN 184          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 7.720e-21
Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = -1
Query:    1 SNSPDTNILDLGFFNAVQFLQDRTTPRTVGELITEAKRAFEEQSPSTLDKVWVSL 165
            SN P TNILDLGFFNA+Q LQDRTTPRTV E I E KRAFEEQSPSTLDKVW SL
Sbjct:   35 SNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESL 89          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: W4G1E2_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1E2_9STRA)

HSP 1 Score: 93.6 bits (231), Expect = 9.420e-19
Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = -2
Query:  189 KVARWITVQ-RAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRL 461
            KV  W  V+ + A+R S+NR  GT  T  + V K++++R +++ VIP+I+ +WPG RG T +IQQDNA  H    DPDVVAAG    WDIRL
Sbjct:  462 KVGTWAFVETQQAKRTSKNRVRGTPITVPMTVTKDIYRRHIIEHVIPSIRLKWPGHRGNTIYIQQDNARPHVSIRDPDVVAAGALHGWDIRL 553          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: W4FB73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FB73_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 2.010e-17
Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = -2
Query:  189 AQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRL 428
            A+R S+NR  GT  T  + V K++++R +++ VIP+I+ +WPG RG T +IQ+DNA  H    DPDVVAAG    WDIRL
Sbjct:  187 AKRTSKNRVRGTPITVPMTVTKDIYRRFIIEHVIPSIRLKWPGHRGNTIYIQKDNARPHVSIRDPDVVAAGALHGWDIRL 266          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 2.830e-17
Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = -2
Query:  186 KVARWITVQ-RAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLI 461
            KV  W  V+ + A+R S+NR  GT  T  + V K V++R +VD+VIPAI+A+WPG RG T ++QQDNA  H    DP+V+AAG  + W+I+L+
Sbjct:  230 KVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLM 322          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A329SNK0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SNK0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 5.620e-17
Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = -2
Query:  186 RNSRNRAAGTTETKCV-EVAKEVFKRKVVDEVIPAIKARWPGG-RGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLI 422
            R S NR  GT  T+ V  V + ++K  +++EVIPAIKA+WP   R RT FIQQDNA  H   ++PDVVAAGT+D W+IRL+
Sbjct:    2 RGSVNRKKGTICTRNVASVDRPLYKHYIIEEVIPAIKAKWPASERARTIFIQQDNATPHVPVSEPDVVAAGTSDDWNIRLL 82          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A2D4BR47_PYTIN (Mar9 transposase putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR47_PYTIN)

HSP 1 Score: 86.7 bits (213), Expect = 1.190e-16
Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = -2
Query:  183 AQRNSRNRAAGTTETKCVE-VAKEVFKRKVVDEVIPAIKARWPGG-RGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLIN 428
            A R S+NR  G    K ++ + KEV+K  ++  VIPAIKA+WP G +G+T +IQQDNA  HR+  DP +VAAG++D W IRL+N
Sbjct:  174 ALRTSKNREKGXEIIKPIDSINKEVYKEYLITHVIPAIKAQWPRGEKGKTIWIQQDNATPHRVLXDPXIVAAGSSDGWXIRLLN 257          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: W4FWJ6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWJ6_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 2.990e-16
Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = -2
Query:  189 KVARWITVQRA-AQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRL 461
            K+  W   Q   A R+SRNR AGT E + V V + V+K+ ++D VIPAIKA WP    +T FIQQDNA  H   +D D++ A T+D W ++L
Sbjct:   65 KIGTWHFTQHVRAARSSRNRPAGTMELRPVNVTRPVYKKMLIDNVIPAIKALWPADCSKTVFIQQDNARLHVPPSDADIIKACTSDGWAMKL 156          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A6A3M484_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3M484_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.810e-16
Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = -2
Query:  189 KVARW-ITVQRAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRL 461
            K+  W I  + +A R S NR  G   TKCV + + V+ + +  +V+PAI+ +WPGG+ R  FIQQDNA  H +  D ++ AAG  D WDIR+
Sbjct:  224 KIGIWPIVEESSALRKSINRPKGAIVTKCVNMTRSVYVKMLKTKVLPAIRTKWPGGKRRVIFIQQDNASPHVLEKDEEIAAAGKEDGWDIRM 315          
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: W4GGI5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGI5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 4.300e-15
Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = -2
Query:  186 KVARWITVQ-RAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLI 461
            K+  W  V+ + A R S+NR  GT  T  + V K +++R +VD+VIPAI+A+WPG RG T ++QQ+NA  H    D +VVAA   + W+I+L+
Sbjct:  163 KIGLWPIVETKVAARRSKNRDRGTPVTVPMTVTKPIYRRLLVDKVIPAIQAKWPGQRGGTIYLQQNNARPHVAVDDAEVVAASRKNGWNIQLV 255          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JGY9_9PHAE2.340e-4387.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9R2_9PHAE7.720e-2183.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W4G1E2_9STRA9.420e-1948.91DDE Tnp4 domain-containing protein n=1 Tax=Aphanom... [more]
W4FB73_9STRA2.010e-1750.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A6A5AA16_9STRA2.830e-1748.39Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A329SNK0_9STRA5.620e-1754.32Uncharacterized protein n=1 Tax=Phytophthora cacto... [more]
A0A2D4BR47_PYTIN1.190e-1651.19Mar9 transposase putative n=1 Tax=Pythium insidios... [more]
W4FWJ6_9STRA2.990e-1646.74Uncharacterized protein n=2 Tax=Aphanomyces astaci... [more]
A0A6A3M484_9STRA5.810e-1643.48Uncharacterized protein n=2 Tax=Phytophthora rubi ... [more]
W4GGI5_9STRA4.300e-1544.09Uncharacterized protein n=5 Tax=Aphanomyces astaci... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18603contigEcto-sp13_S_contig18603:1479..2060 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size582
Hectar predicted targeting categoryother localisation
Exons1
Cds size336
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.578348-UTR-Ecto-sp13_S_contig18603:1478..17241681462954.578348-UTR-Ecto-sp13_S_contig18603:1478..1724Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18603 1479..1724 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.5897856-CDS-Ecto-sp13_S_contig18603:1724..20601681462954.5897856-CDS-Ecto-sp13_S_contig18603:1724..2060Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18603 1725..2060 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18603.5827.1prot_Ecto-sp13_S_contig18603.5827.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18603 1725..2060 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18603.5827.1

>prot_Ecto-sp13_S_contig18603.5827.1 ID=prot_Ecto-sp13_S_contig18603.5827.1|Name=mRNA_Ecto-sp13_S_contig18603.5827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp
MRWDGALSCWMKVVRPLPPGQRALMAGMTSSTTFLLKTSFATSTHLVSVV
PAALFLLLRCAARCTVIHRATFFLHAVVLPQAADSLRMLFELCSNPLEVT
SAQLSVLAALQ*
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mRNA from alignment at Ecto-sp13_S_contig18603:1479..2060+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18603.5827.1 ID=mRNA_Ecto-sp13_S_contig18603.5827.1|Name=mRNA_Ecto-sp13_S_contig18603.5827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18603:1479..2060+ (Ectocarpus species13 EcNAP12_S_4_19m)
GAGGGATACCCAGACCTTGTCAAGGGTAGAAGGGCTCTGTTCCTCGAAGG CCCTCTTCGCCTCGGTGATGAGCTCCCCAACCGTCCTCGGAGTAGTGCGG TCTTGGAGAAACTGAACTGCGTTGAAGAACCCCAGGTCCAGGATGTTGGT GTCTGGACTGTTGGATGTTAGGCAAGTGTTAGGTTGATGAGCCTGATGTC CCAGGCGTCGGCAGTGCCAGCGGCCACGACGTCCGGGTCGGCGTAGATGC GGTGGGACGGCGCGTTGTCCTGCTGGATGAAGGTTGTTCGTCCCCTTCCC CCGGGCCAGCGAGCCTTGATGGCGGGGATGACCTCATCCACCACCTTCCT CTTGAAAACCTCTTTCGCCACCTCCACACACTTGGTCTCCGTCGTCCCAG CCGCCCTGTTCCTGCTGTTGCGCTGCGCGGCGCGCTGTACGGTGATCCAC CGCGCCACCTTCTTTCTGCATGCTGTAGTTCTTCCACAGGCGGCTGATAG TCTCCGGATGTTGTTCGAACTGTGCTCCAACCCTCTTGAGGTCACCTCTG CACAGCTTTCCGTTCTTGCTGCCCTTCAGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18603:1479..2060+

>mRNA_Ecto-sp13_S_contig18603.5827.1 ID=mRNA_Ecto-sp13_S_contig18603.5827.1|Name=mRNA_Ecto-sp13_S_contig18603.5827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18603:1479..2060+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGTGGGACGGCGCGTTGTCCTGCTGGATGAAGGTTGTTCGTCCCCT
TCCCCCGGGCCAGCGAGCCTTGATGGCGGGGATGACCTCATCCACCACCT
TCCTCTTGAAAACCTCTTTCGCCACCTCCACACACTTGGTCTCCGTCGTC
CCAGCCGCCCTGTTCCTGCTGTTGCGCTGCGCGGCGCGCTGTACGGTGAT
CCACCGCGCCACCTTCTTTCTGCATGCTGTAGTTCTTCCACAGGCGGCTG
ATAGTCTCCGGATGTTGTTCGAACTGTGCTCCAACCCTCTTGAGGTCACC
TCTGCACAGCTTTCCGTTCTTGCTGCCCTTCAGTAG
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