mRNA_Ecto-sp13_S_contig18603.5827.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A6H5JGY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY9_9PHAE) HSP 1 Score: 156 bits (394), Expect = 2.340e-43 Identity = 77/88 (87.50%), Postives = 78/88 (88.64%), Query Frame = -2
Query: 183 ITVQRAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLIN 446
TVQRAAQRNSRNRAAGT ETKCVEV KEVFKRKVVDEV PAIKARWPGGRGRT +IQ DN PSHRI ADPDVVAAG AD WDIRLIN
Sbjct: 97 FTVQRAAQRNSRNRAAGTMETKCVEVTKEVFKRKVVDEVFPAIKARWPGGRGRTIYIQLDNKPSHRINADPDVVAAGIADGWDIRLIN 184
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A6H5K9R2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R2_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 7.720e-21 Identity = 46/55 (83.64%), Postives = 47/55 (85.45%), Query Frame = -1
Query: 1 SNSPDTNILDLGFFNAVQFLQDRTTPRTVGELITEAKRAFEEQSPSTLDKVWVSL 165
SN P TNILDLGFFNA+Q LQDRTTPRTV E I E KRAFEEQSPSTLDKVW SL
Sbjct: 35 SNIPHTNILDLGFFNAIQSLQDRTTPRTVDEFIIEVKRAFEEQSPSTLDKVWESL 89
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: W4G1E2_9STRA (DDE Tnp4 domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G1E2_9STRA) HSP 1 Score: 93.6 bits (231), Expect = 9.420e-19 Identity = 45/92 (48.91%), Postives = 61/92 (66.30%), Query Frame = -2
Query: 189 KVARWITVQ-RAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRL 461
KV W V+ + A+R S+NR GT T + V K++++R +++ VIP+I+ +WPG RG T +IQQDNA H DPDVVAAG WDIRL
Sbjct: 462 KVGTWAFVETQQAKRTSKNRVRGTPITVPMTVTKDIYRRHIIEHVIPSIRLKWPGHRGNTIYIQQDNARPHVSIRDPDVVAAGALHGWDIRL 553
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: W4FB73_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FB73_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 2.010e-17 Identity = 40/80 (50.00%), Postives = 55/80 (68.75%), Query Frame = -2
Query: 189 AQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRL 428
A+R S+NR GT T + V K++++R +++ VIP+I+ +WPG RG T +IQ+DNA H DPDVVAAG WDIRL
Sbjct: 187 AKRTSKNRVRGTPITVPMTVTKDIYRRFIIEHVIPSIRLKWPGHRGNTIYIQKDNARPHVSIRDPDVVAAGALHGWDIRL 266
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A6A5AA16_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5AA16_9STRA) HSP 1 Score: 89.0 bits (219), Expect = 2.830e-17 Identity = 45/93 (48.39%), Postives = 64/93 (68.82%), Query Frame = -2
Query: 186 KVARWITVQ-RAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLI 461
KV W V+ + A+R S+NR GT T + V K V++R +VD+VIPAI+A+WPG RG T ++QQDNA H DP+V+AAG + W+I+L+
Sbjct: 230 KVGLWPFVETQLAKRRSKNRDRGTPVTVPMTVTKPVYRRFLVDKVIPAIQAQWPGRRGATIYVQQDNAKPHVAVDDPEVLAAGRKEGWNIQLM 322
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A329SNK0_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SNK0_9STRA) HSP 1 Score: 83.6 bits (205), Expect = 5.620e-17 Identity = 44/81 (54.32%), Postives = 57/81 (70.37%), Query Frame = -2
Query: 186 RNSRNRAAGTTETKCV-EVAKEVFKRKVVDEVIPAIKARWPGG-RGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLI 422
R S NR GT T+ V V + ++K +++EVIPAIKA+WP R RT FIQQDNA H ++PDVVAAGT+D W+IRL+
Sbjct: 2 RGSVNRKKGTICTRNVASVDRPLYKHYIIEEVIPAIKAKWPASERARTIFIQQDNATPHVPVSEPDVVAAGTSDDWNIRLL 82
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A2D4BR47_PYTIN (Mar9 transposase putative n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BR47_PYTIN) HSP 1 Score: 86.7 bits (213), Expect = 1.190e-16 Identity = 43/84 (51.19%), Postives = 59/84 (70.24%), Query Frame = -2
Query: 183 AQRNSRNRAAGTTETKCVE-VAKEVFKRKVVDEVIPAIKARWPGG-RGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLIN 428
A R S+NR G K ++ + KEV+K ++ VIPAIKA+WP G +G+T +IQQDNA HR+ DP +VAAG++D W IRL+N
Sbjct: 174 ALRTSKNREKGXEIIKPIDSINKEVYKEYLITHVIPAIKAQWPRGEKGKTIWIQQDNATPHRVLXDPXIVAAGSSDGWXIRLLN 257
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: W4FWJ6_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FWJ6_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 2.990e-16 Identity = 43/92 (46.74%), Postives = 58/92 (63.04%), Query Frame = -2
Query: 189 KVARWITVQRA-AQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRL 461
K+ W Q A R+SRNR AGT E + V V + V+K+ ++D VIPAIKA WP +T FIQQDNA H +D D++ A T+D W ++L
Sbjct: 65 KIGTWHFTQHVRAARSSRNRPAGTMELRPVNVTRPVYKKMLIDNVIPAIKALWPADCSKTVFIQQDNARLHVPPSDADIIKACTSDGWAMKL 156
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: A0A6A3M484_9STRA (Uncharacterized protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3M484_9STRA) HSP 1 Score: 85.1 bits (209), Expect = 5.810e-16 Identity = 40/92 (43.48%), Postives = 57/92 (61.96%), Query Frame = -2
Query: 189 KVARW-ITVQRAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRL 461
K+ W I + +A R S NR G TKCV + + V+ + + +V+PAI+ +WPGG+ R FIQQDNA H + D ++ AAG D WDIR+
Sbjct: 224 KIGIWPIVEESSALRKSINRPKGAIVTKCVNMTRSVYVKMLKTKVLPAIRTKWPGGKRRVIFIQQDNASPHVLEKDEEIAAAGKEDGWDIRM 315
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Match: W4GGI5_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GGI5_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.300e-15 Identity = 41/93 (44.09%), Postives = 61/93 (65.59%), Query Frame = -2
Query: 186 KVARWITVQ-RAAQRNSRNRAAGTTETKCVEVAKEVFKRKVVDEVIPAIKARWPGGRGRTTFIQQDNAPSHRIYADPDVVAAGTADAWDIRLI 461
K+ W V+ + A R S+NR GT T + V K +++R +VD+VIPAI+A+WPG RG T ++QQ+NA H D +VVAA + W+I+L+
Sbjct: 163 KIGLWPIVETKVAARRSKNRDRGTPVTVPMTVTKPIYRRLLVDKVIPAIQAKWPGQRGGTIYLQQNNARPHVAVDDAEVVAASRKNGWNIQLV 255 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18603.5827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig18603.5827.1 >prot_Ecto-sp13_S_contig18603.5827.1 ID=prot_Ecto-sp13_S_contig18603.5827.1|Name=mRNA_Ecto-sp13_S_contig18603.5827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=112bp MRWDGALSCWMKVVRPLPPGQRALMAGMTSSTTFLLKTSFATSTHLVSVVback to top mRNA from alignment at Ecto-sp13_S_contig18603:1479..2060+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig18603.5827.1 ID=mRNA_Ecto-sp13_S_contig18603.5827.1|Name=mRNA_Ecto-sp13_S_contig18603.5827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=582bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18603:1479..2060+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18603:1479..2060+ >mRNA_Ecto-sp13_S_contig18603.5827.1 ID=mRNA_Ecto-sp13_S_contig18603.5827.1|Name=mRNA_Ecto-sp13_S_contig18603.5827.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=336bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18603:1479..2060+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |