prot_Ecto-sp13_S_contig1860.5824.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig1860.5824.1
Unique Nameprot_Ecto-sp13_S_contig1860.5824.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length234
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1860.5824.1 vs. uniprot
Match: D7G443_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G443_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 9.580e-94
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = 0 
Query:   84 VFAWSFLGFETHFSIRGRRRRLLRPFTSLSFVALLYLLLFSMSMAIWIFGTWAIAKDRVGNSCANEVPLLYSFCVALVAIYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQYAQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQ 234
            VFAWSFLGFETHFSIRGR+RR LRPF+SLSFVALLYLLLFSMSMAIWIFGTWAI KDRVGNSCANEVPLLYSFCVALVA+YWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQ+AQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQ
Sbjct:    2 VFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGTWAIVKDRVGNSCANEVPLLYSFCVALVAVYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQFAQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQ 152
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BLAST of mRNA_Ecto-sp13_S_contig1860.5824.1 vs. uniprot
Match: A0A7S1UGR8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGR8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.930e-14
Identity = 46/150 (30.67%), Postives = 83/150 (55.33%), Query Frame = 0 
Query:   20 RKWASVVLLGPLMPSLMATVIIVVGGAIVKASA----DVVGELEDDRCGYRIDNFLKAAIVNSYLLLTVFAWSFLGFETHFSIRGRRRRLLRPFTSLSFVALLYLLLFSMSMAIWIFGTWAIAKDRVGNSCANEVPLLYSFCVALVAIYW 165
            RKW+ V++ GPL  +  A    +VG  ++  +     D+ G+  ++     I NF++ AIV SYL L ++AW FLGF+    I  R+  +LRP  +L+ +  LY +L  +++ ++ +G W+++       C + VP +YSF   +  +Y+
Sbjct:   16 RKWSGVLIFGPLPWAFFAIFTTLVGSVLIHTAKLKCLDLFGDAGNN--ADNIANFIRGAIVVSYLFLMLYAWLFLGFKWDLKIMSRKYPVLRPIPNLAVLCTLYAILAVVTVPVFAYGAWSLSDSY----CLDSVPTIYSFASFITIVYF 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1860.5824.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G443_ECTSI9.580e-9496.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UGR8_9STRA3.930e-1430.67Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 112..132
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 177..234
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 70..92
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..24
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 152..176
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 133..151
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 51..69
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 25..50
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 93..111
NoneNo IPR availableTMHMMTMhelixcoord: 25..47
NoneNo IPR availableTMHMMTMhelixcoord: 70..92
NoneNo IPR availableTMHMMTMhelixcoord: 154..176
NoneNo IPR availableTMHMMTMhelixcoord: 112..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1860contigEcto-sp13_S_contig1860:20..3052 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1860.5824.1mRNA_Ecto-sp13_S_contig1860.5824.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig1860 20..3052 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig1860.5824.1 ID=prot_Ecto-sp13_S_contig1860.5824.1|Name=mRNA_Ecto-sp13_S_contig1860.5824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
MDAELESPAAALAASSATQRKWASVVLLGPLMPSLMATVIIVVGGAIVKA
SADVVGELEDDRCGYRIDNFLKAAIVNSYLLLTVFAWSFLGFETHFSIRG
RRRRLLRPFTSLSFVALLYLLLFSMSMAIWIFGTWAIAKDRVGNSCANEV
PLLYSFCVALVAIYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQYAQ
NRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQ
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