mRNA_Ecto-sp13_S_contig1860.5824.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1860.5824.1
Unique NamemRNA_Ecto-sp13_S_contig1860.5824.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1860.5824.1 vs. uniprot
Match: D7G443_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G443_ECTSI)

HSP 1 Score: 282 bits (721), Expect = 9.580e-94
Identity = 145/151 (96.03%), Postives = 149/151 (98.68%), Query Frame = 1 
Query:  250 VFAWSFLGFETHFSIRGRRRRLLRPFTSLSFVALLYLLLFSMSMAIWIFGTWAIAKDRVGNSCANEVPLLYSFCVALVAIYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQYAQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQ 702
            VFAWSFLGFETHFSIRGR+RR LRPF+SLSFVALLYLLLFSMSMAIWIFGTWAI KDRVGNSCANEVPLLYSFCVALVA+YWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQ+AQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQ
Sbjct:    2 VFAWSFLGFETHFSIRGRKRRFLRPFSSLSFVALLYLLLFSMSMAIWIFGTWAIVKDRVGNSCANEVPLLYSFCVALVAVYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQFAQNRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQ 152
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BLAST of mRNA_Ecto-sp13_S_contig1860.5824.1 vs. uniprot
Match: A0A7S1UGR8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGR8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 3.930e-14
Identity = 46/150 (30.67%), Postives = 83/150 (55.33%), Query Frame = 1 
Query:   58 RKWASVVLLGPLMPSLMATVIIVVGGAIVKASA----DVVGELEDDRCGYRIDNFLKAAIVNSYLLLTVFAWSFLGFETHFSIRGRRRRLLRPFTSLSFVALLYLLLFSMSMAIWIFGTWAIAKDRVGNSCANEVPLLYSFCVALVAIYW 495
            RKW+ V++ GPL  +  A    +VG  ++  +     D+ G+  ++     I NF++ AIV SYL L ++AW FLGF+    I  R+  +LRP  +L+ +  LY +L  +++ ++ +G W+++       C + VP +YSF   +  +Y+
Sbjct:   16 RKWSGVLIFGPLPWAFFAIFTTLVGSVLIHTAKLKCLDLFGDAGNN--ADNIANFIRGAIVVSYLFLMLYAWLFLGFKWDLKIMSRKYPVLRPIPNLAVLCTLYAILAVVTVPVFAYGAWSLSDSY----CLDSVPTIYSFASFITIVYF 159
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1860.5824.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G443_ECTSI9.580e-9496.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UGR8_9STRA3.930e-1430.67Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1860contigEcto-sp13_S_contig1860:20..3052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size702
Hectar predicted targeting categorysignal anchor
Exons4
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-25_000620.1
Cds size702
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462954.2899668-CDS-Ecto-sp13_S_contig1860:19..1391681462954.2899668-CDS-Ecto-sp13_S_contig1860:19..139Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1860 20..139 -
1681462954.3002722-CDS-Ecto-sp13_S_contig1860:858..10541681462954.3002722-CDS-Ecto-sp13_S_contig1860:858..1054Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1860 859..1054 -
1681462954.3104203-CDS-Ecto-sp13_S_contig1860:1568..18011681462954.3104203-CDS-Ecto-sp13_S_contig1860:1568..1801Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1860 1569..1801 -
1681462954.3244445-CDS-Ecto-sp13_S_contig1860:2899..30521681462954.3244445-CDS-Ecto-sp13_S_contig1860:2899..3052Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1860 2900..3052 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1860.5824.1prot_Ecto-sp13_S_contig1860.5824.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1860 20..3052 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1860.5824.1

>prot_Ecto-sp13_S_contig1860.5824.1 ID=prot_Ecto-sp13_S_contig1860.5824.1|Name=mRNA_Ecto-sp13_S_contig1860.5824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=234bp
MDAELESPAAALAASSATQRKWASVVLLGPLMPSLMATVIIVVGGAIVKA
SADVVGELEDDRCGYRIDNFLKAAIVNSYLLLTVFAWSFLGFETHFSIRG
RRRRLLRPFTSLSFVALLYLLLFSMSMAIWIFGTWAIAKDRVGNSCANEV
PLLYSFCVALVAIYWVGVVFGAVGLIKVLFGKKIQSGAQATVEKGKQYAQ
NRDKEQVLEAEQQLVARKFDARDEEGNGTIDRQQ
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mRNA from alignment at Ecto-sp13_S_contig1860:20..3052-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1860.5824.1 ID=mRNA_Ecto-sp13_S_contig1860.5824.1|Name=mRNA_Ecto-sp13_S_contig1860.5824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3033bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1860:20..3052- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCTGAACTCGAATCGCCAGCGGCTGCTCTTGCAGCGAGCTCGGC
GACTCAGAGAAAATGGGCGTCTGTTGTGTTGCTGGGTCCTTTGATGCCGA
GCTTGATGGCGACAGTGATCATCGTGGTTGGTGGGGCCATCGTGAAGGCG
AGTGTCGGTATGGTTGACATAAGACAGGTTTACATAGCAGAGAGTGAAGC
CGCCGTCCACGTATTTCGATCAGAGCTGGTTCACGACTTGTGACGACTAC
TGTATACTGCTGTGCTGTAGGCTAATGGCGGGGTCCCTATACTCTGTACT
GCGGACACTACCACGTACGCTCAAGACATCTTGATGGGCATTCTAGCTCT
ATACCATCTGCAGTCTATTGTGTAGAACAGTGTCCTTCGAAGAGATAGGC
ATGGAGTCACCGGAACGACAGGTCCCAGGTGAGATGCGAACCTGTAACAC
GTGAGATTCCTGCAACATTTCGTGCAGAGATGTGAATGCACCACTCTCAA
GCCGCGGTCAAGTGACGATTTTGAGGGTTTACTTCTCAATCAGAACGCGC
GCGCAAAGCACTTTGAAATATTCCAACAGCACCTATTCTATGTTGAAGGC
ACTCGACTTTCTGGGCATGTCCTACGTCTGTGCATGTATGCGAAGGGGTA
TCCTACTGCTCTTGGGGTCTTGCAACTCCATGAAAATAGTTAGTCTACTG
AGAACAAACGACTCAACCAATCCCGGGCGTTTGTAGCATCTATATACGGA
GATGAAGCTGCGTCTTACGTCTTGCGGGCGGTGCACACCACGTGTACGAC
AACCTTTGGCGTCAAGACAGTGAAATAAATGATACGAAATATTGTATTGT
GACCAAATGAACATTGCACAAACGTGCGTGCGTGCTCAGAGTATCCAAAT
ATATATTCTCATGTTGTGCGGAGCCCTTCGAAAAAAAGGCCTCACCTGCA
CAATCCCGGAACGGTATGCCTTTCGAGAAAAACCGCATACATCTACTGGG
AATTGTCGGCCATCGTCAGTGTTTCCTTTTCCAAAAAAGTTGTGCTGTCA
TGGATACCCTCGTTAGAACACCGTCCTTCGCAGCTCCCACCAACCTTACG
GCATTCACTTTTCGGCAGCTCAGATCCGTATAACCAACGTAGGAAGTTCA
AACCTCCCTGTGTACAGCTATCACAGCAAGCTTTGCTACGGGACAGTCAC
TCGTCATGGCGCACACCCAACGAGTTTGCTTGTTGTTTGCACCATCTGCA
GGCGGATGTTGTCGGCGAGCTTGAGGACGATCGGTGCGGGTACAGGATCG
ACAATTTTCTCAAGGCGGCTATCGTGAACAGCTATTTGCTGCTCACGGTG
TTCGCGTGGTCGTTCCTTGGGTTCGAGACCCACTTCTCCATTCGAGGCCG
AAGAAGGCGCCTCTTACGGCCCTTTACAAGCCTCTCGTTCGTGGCATTGC
TGTACCTGCTGTTGTTCAGCATGAGCATGGCCATGTGAGCGCACGTGCCG
ACAACTTCCCTTCAAATCATTCGTTTGGGGAGGGTTGCGTTGTATTGATT
CATTCATCCGAGCTTGTGTTCGGTCCTAGTCACCGGGGTGAAGTCACCGG
AGTTGTCACACGCTTTGTCTTCCACTTGAATCTCAGCCGAAACTACCGAC
ATCATATAGTACACAATGGTGGTGACCCTATCAAAACATAGCGAAGGCGT
CTACAAAGCGTTGTTTGCGCGAAGCGAGGTGAAACGAATCCAAACAAAAA
AATATGTTCGCATTCCACAAACCCTTGCATCTCTGCCTAGCGGTGTGGTC
ACATAGCTCTTGGACGTTGACACCAAAAGAGCGGAAAAGTAATGCGAAGC
TTGGATTTGCTTGAAGGACAATCGACACCCGACCAGACGAACCCGCCAGC
ACGGGATCAGCCCTAGCTCTTGGAGTCCATCGCACGTTCCACCACCACCT
GACAGTAACTATCCGTCGTTTTGCTGCGTACCACGACCACCGCATCAGAT
GGATATTCGGCACTTGGGCCATCGCCAAGGACCGCGTAGGCAACAGCTGC
GCGAACGAAGTCCCCCTGCTCTACTCCTTCTGCGTGGCCTTGGTCGCCAT
CTACTGGGTCGGTGTGGTGTTCGGAGCCGTCGGTCTGATAAAGGTCCTGT
TCGGCAAGAAGATCCAAAGCGGAGCCCAAGCGACTGTCGAGAAGGTGCCC
ACCGTAAAAAAGACGCGGTAGAACCTCAACCACCCCATCCTTGTTGTTGC
GGTCCCGAGACTCGAAGAGAAGCGGCCCGGCCCTGGGGTGGCCTTCGCTC
CCCCTGTGTGACCCTGTCTGTTGGCAAATGCCAAAGAAACAAAGACAAAA
ACTGATGTGTGGCCTTCCTCTTCCCTATGTGTGCCTGCCTATTGAGAAAT
GATCCCGCCTGGTGCTTCCAGAGAGAAAAAGAACGTATGCATAGGATGGT
GAGGCAGACGCCCCCAAACGGACGTTTTCGTTGCTTCGGTTGTCGCACTG
TTGTCTGTCTGATTTAGGCCTGTCAAGACGCGTTATTCGTGCGTACACAA
CGCTGACAAATTGCTAATAGTTGGATAGAGGGCTCAAGGCGACGTGCAAG
GAACCATCGAAGAGATTTGCTACCAGTAGAGCTGCGAATACGAGGACAGA
TTGGGTACAGGAACGATGCGAATCACACCAAAGTGAATTTACCAGAGATA
TTGTGCGCTGACGAGCCGAACTCATGGCACACCCATTCTTCGCCACTCAG
AGGTGTGAGCACATACTTTATGTACCCTTGTACCCTTCTATGGCGATATC
TCGCTTGTTCGCTAGTCAAAAACCTATTTGGTGGGACGGTGGTGCATGGT
ATGAGTGTCAGTTCCGTCTGTTATGCTCACACGAGTTGTCTCAATTTTGT
GATGGTCGGCCAGGGGAAGCAATACGCGCAGAACAGAGATAAGGAACAGG
TTCTCGAGGCGGAGCAGCAATTGGTCGCACGAAAGTTCGACGCTCGCGAC
GAGGAAGGAAATGGAACCATCGATCGTCAACAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1860:20..3052-

>mRNA_Ecto-sp13_S_contig1860.5824.1 ID=mRNA_Ecto-sp13_S_contig1860.5824.1|Name=mRNA_Ecto-sp13_S_contig1860.5824.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=702bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1860:20..3052- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGCTGAACTCGAATCGCCAGCGGCTGCTCTTGCAGCGAGCTCGGC
GACTCAGAGAAAATGGGCGTCTGTTGTGTTGCTGGGTCCTTTGATGCCGA
GCTTGATGGCGACAGTGATCATCGTGGTTGGTGGGGCCATCGTGAAGGCG
AGTGCGGATGTTGTCGGCGAGCTTGAGGACGATCGGTGCGGGTACAGGAT
CGACAATTTTCTCAAGGCGGCTATCGTGAACAGCTATTTGCTGCTCACGG
TGTTCGCGTGGTCGTTCCTTGGGTTCGAGACCCACTTCTCCATTCGAGGC
CGAAGAAGGCGCCTCTTACGGCCCTTTACAAGCCTCTCGTTCGTGGCATT
GCTGTACCTGCTGTTGTTCAGCATGAGCATGGCCATATGGATATTCGGCA
CTTGGGCCATCGCCAAGGACCGCGTAGGCAACAGCTGCGCGAACGAAGTC
CCCCTGCTCTACTCCTTCTGCGTGGCCTTGGTCGCCATCTACTGGGTCGG
TGTGGTGTTCGGAGCCGTCGGTCTGATAAAGGTCCTGTTCGGCAAGAAGA
TCCAAAGCGGAGCCCAAGCGACTGTCGAGAAGGGGAAGCAATACGCGCAG
AACAGAGATAAGGAACAGGTTCTCGAGGCGGAGCAGCAATTGGTCGCACG
AAAGTTCGACGCTCGCGACGAGGAAGGAAATGGAACCATCGATCGTCAAC
AG
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