mRNA_Ecto-sp13_S_contig1858.5817.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1858.5817.1 vs. uniprot
Match: D8LMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV8_ECTSI) HSP 1 Score: 2022 bits (5239), Expect = 0.000e+0 Identity = 1242/1593 (77.97%), Postives = 1268/1593 (79.60%), Query Frame = 1
Query: 796 MARVDLKIVADTSPPPIIATSASNLKLGATTSNSPTPGFLRLTCGAPFEVAYRFNYSTAVPTGDWLGVIAWGDEPTAGTCIVRRPFLESSSGTVLFEEGPPLPGKYAVHAFLTESNNAVAGSTAMFECISGFGAEEARCSRNGREFTLYLSTRWDMMVERAAFRDAAAPALKQMLDARGVTFGYIDARSDLDVEDLTTPRGVDAVLDGIRRCCPYFVCCLGELNDVELGAESVNASILQESPWLKRVLLPDSSALTNSSDRETKLVRAGRMRAAAAMLTVTDLEVLSGFLLPVLQETIQAESGSSTTAGVTRARLAAVPGGAARHSCIVNALADFRRLVSQQDREGGDGQDEEDAGDGNGKPVAVDAAQSSGLVAQGTVVPKRGFMTEHAFFYTRAACLRSELHPTQKMGAGGIAGAIRFINGSKGRMIKLKHELAANTSRFRQGYQDETVLVSMLLEDLSRAIDCLYPLHTAPDRLDYASLFPHASARNLLYAAVVKLPVVRYRGFRPEPSAVTGGVLASPGLAAFPAASTXXXXXXXXXXXXXXXXXAWRLQQRLEFIPFEERVKRMSGEAQEGGDTSAXXXXXXXXXDGGTAAGARVDRSLGSDGRQGTARSLGTTPAETGSEDSGDVAAGSGAAPAATPAVAARRLAVVLADYLGDKTTIGMVVVDQPGTGLTTALLGFLEWYCRGQVAGGRKGVTVVESLDRIPQYGRCNLSRAVISRPRLVSRNLNDEGLVDETVERRTLVVRVDCRDPCHGRLDKAHLVNYLSCEMIRTFGMPYKMPDKPGLSSRPDT---------------------------------------------------------------------GIVSEHTSDNPRDHNHDDDEAAVDPQDQLATDTAAVSGTKSGRGTMAVAAATSGGKGGREGGRTEVGPEVLRRWFDVLRGHGDLVLVIENPDALVTPEERAAASPEQAPNPLAWLPPELPPHVKVITTCSTGSSCQQLLCGAEGWGWHMLRRKAGLDADTKCHVIDAVLRKHGVGCMLDWVESDLHNK----NAQFLVGVTEALCYSGKLARSGLPPGLHTAAGTGSRPASPSSVSSAAACRXXXXXXXXXXXXXXXXXXXXXXXXMSDADVARLRGAAASMMHEESAIGVARLRIRQLVSIKGHRGSLLRAALCLVRLSHAGLSALELSAALRHILERYKSQRHQHHKPPAYATFTTSAAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV-TPAAGQSPVSPSPRATGSPETPPTPGAYADSTKDRNNDSGLPDAPRESVTATDTTAXXXXXXXXXIPEKAGDASMVHASSREVXXXXXXXXXXXXXXXXXXXXX-GGKGAAALGEHGLTSSSPTAERTQRPAFGQQDWRALEPDLMQFCHKVLGRFVLRDFVTVTAVDLECLKTLDKFVVLADSFAKDLPGVRRAEEQLAALGAIVVLSTHGGVEAPRRASRPYREKLFIALADVELLYAMNGSKRGDPQAYLEYMHLAHVFAAPRRFAAAVRSTFEEYYNVVSHKAMGFHGRNYREHYQHQAPAA 5349
MARVDLKIVA SPPP AT+ASNLKLGATTSNSPTPGFLRLTCGAPFEVAYRFNYSTAVPTGDWLGVIAWGDEPTAGTCIVRRPFLESSSGTV FEEGPPLPGKYAVHAFLTESNNAVAGSTAMFECISGFGAEEARCSRNGREFTLYLSTRWDMM+ERAAFRDAAAPALKQMLDARGVTFG+IDARSDLDVEDLTTPRGVDAVLDGIRRCCPYFVCCLGELNDVELGAESVNASILQ +PWLKRVLL DS ALTNSSDRE KLVRAGRMRAAAAMLTVTDLEVLSGFLLPVLQETIQAESGS TTAGVTRARLAAVPGGAARHSCIVNALADFRRLVSQQDREGGDG DEE AGDGNGKPVA DA C + +H ++ L H + R ++ DLSRAID LYP+HTAPDRLDY SLFPHASARNLL AAVVKLPVVRYRGFRPEPSAVTGGVLASPGLA PAAST XXXXXXXXXXXXXXXXAWRLQQRLEFIPFEERVKRMSGEAQ GGD S XXXXXXXXX TAA RVD SLGSDGR+GTARSLGTTPAETG TPAVAA+RLAVVLADYLGDKTTIGMVVVDQPGTGLTTALLGFLEWYCRGQVAGGRKGVTVVESLDRIPQYGRCNLSRAVISRPRLVSRNLND GL DETVERRTLVVRVDCRDPCHGRLDKAHLVNYLSCE+IRTFGMPYKMPDKPGLSSR GIVSE TSDNPR+HNHDDDEAAVDPQDQLA DTAA SGTKSG GTMAV KGG+EGGRTE+GPEVLRRWFDVLRGHGDLVLVIENPDALVTPEERAAASPEQ PNPLAWLPPELPPHVKVITTCSTGSSCQQLLCGAEGWGWHMLRRKAGLDADTK VIDAVLRKHGVGCMLDWVESDL K N QFLVGVTEALCYSGKLARSGLPPGLHTAA GSRPASPSSVSSAAACR XXXXXXX+SDADVA LRGAAASMMHEESAIGVARLRIRQLVSIKGHRGSLLRAALCLVRLSHAGLS LELSAALRHILERYKSQRHQHHKPP Y T SAAG+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX V TP QSP S SP+ATGSPETPP PGA AD+TKDRNNDSGLPDAPR+SVT XXXXXXXXX XXXXXXXXXXXXXXXXXXXXX GGKGAAALGEHGLTSSSP AERTQRPAFGQQDWRALEPDLMQFCHKVLGRFVLRDFVTVTAVDLECL+T DKFVVLADSFAKDLPGVRRAEEQLAAL AIVVLSTHGGVEAPRRASRP+REKLF ALADVELLYAMNGSK STFEEYYNVVSHKAMGFHGRN+REHYQHQA AA
Sbjct: 1 MARVDLKIVAGVSPPPTTATTASNLKLGATTSNSPTPGFLRLTCGAPFEVAYRFNYSTAVPTGDWLGVIAWGDEPTAGTCIVRRPFLESSSGTVFFEEGPPLPGKYAVHAFLTESNNAVAGSTAMFECISGFGAEEARCSRNGREFTLYLSTRWDMMLERAAFRDAAAPALKQMLDARGVTFGFIDARSDLDVEDLTTPRGVDAVLDGIRRCCPYFVCCLGELNDVELGAESVNASILQGNPWLKRVLLSDSPALTNSSDREKKLVRAGRMRAAAAMLTVTDLEVLSGFLLPVLQETIQAESGSCTTAGVTRARLAAVPGGAARHSCIVNALADFRRLVSQQDREGGDGHDEEVAGDGNGKPVAADAGHG---------------------------CSEARIHDGTRL---------------------LLHSCRVPSQRAPPYPKN----------DLSRAIDRLYPMHTAPDRLDYVSLFPHASARNLLNAAVVKLPVVRYRGFRPEPSAVTGGVLASPGLAVSPAASTAXXXXXXXXXXXXXXXXAWRLQQRLEFIPFEERVKRMSGEAQGGGDISXXXXXXXXXXXXXTAAAVRVDLSLGSDGRRGTARSLGTTPAETGXXXXXXXXXXXXXXXXXTPAVAAKRLAVVLADYLGDKTTIGMVVVDQPGTGLTTALLGFLEWYCRGQVAGGRKGVTVVESLDRIPQYGRCNLSRAVISRPRLVSRNLNDGGLADETVERRTLVVRVDCRDPCHGRLDKAHLVNYLSCEIIRTFGMPYKMPDKPGLSSRYRIYNCRLDMFIFNLYGTYQWRRGDATNVGTLELRCRALWVERAAVRERTHWKELKPLALGNGGHHEGKKVHGIVSEQTSDNPREHNHDDDEAAVDPQDQLAADTAAPSGTKSGGGTMAVXXXXXXXKGGKEGGRTEIGPEVLRRWFDVLRGHGDLVLVIENPDALVTPEERAAASPEQVPNPLAWLPPELPPHVKVITTCSTGSSCQQLLCGAEGWGWHMLRRKAGLDADTKGQVIDAVLRKHGVGCMLDWVESDLVLKEKTANIQFLVGVTEALCYSGKLARSGLPPGLHTAASAGSRPASPSSVSSAAACRSNSGSCTSAGKGENCDGXXXXXXXLSDADVASLRGAAASMMHEESAIGVARLRIRQLVSIKGHRGSLLRAALCLVRLSHAGLSVLELSAALRHILERYKSQRHQHHKPPPYTNVTASAAGSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAREPPAREAAVATPTTRQSPASTSPQATGSPETPPNPGASADTTKDRNNDSGLPDAPRKSVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGKGAAALGEHGLTSSSPRAERTQRPAFGQQDWRALEPDLMQFCHKVLGRFVLRDFVTVTAVDLECLETRDKFVVLADSFAKDLPGVRRAEEQLAALAAIVVLSTHGGVEAPRRASRPHREKLFTALADVELLYAMNGSK----------------------------STFEEYYNVVSHKAMGFHGRNHREHYQHQARAA 1507 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1858.5817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1858.5817.1 >prot_Ecto-sp13_S_contig1858.5817.1 ID=prot_Ecto-sp13_S_contig1858.5817.1|Name=mRNA_Ecto-sp13_S_contig1858.5817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1783bp YHHRDKLHYPHPAKDWVGLFLLGDELPPTPAAIASGVRPPPQAGQRQTTPback to top mRNA from alignment at Ecto-sp13_S_contig1858:2..15197- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1858.5817.1 ID=mRNA_Ecto-sp13_S_contig1858.5817.1|Name=mRNA_Ecto-sp13_S_contig1858.5817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=15196bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1858:2..15197- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1858:2..15197- >mRNA_Ecto-sp13_S_contig1858.5817.1 ID=mRNA_Ecto-sp13_S_contig1858.5817.1|Name=mRNA_Ecto-sp13_S_contig1858.5817.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=5349bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1858:2..15197- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |