mRNA_Ecto-sp13_S_contig18575.5815.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18575.5815.1
Unique NamemRNA_Ecto-sp13_S_contig18575.5815.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18575.5815.1 vs. uniprot
Match: A0A6H5KX05_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX05_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 1.980e-32
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 3 
Query:    3 DWNESNQMFWANALECFSRAWSRLTKREGDQEEQAAATTMIAGISTGTTPSTPLETKKGPMDGRTEGDK 209
            DWNESNQ+FWANAL+CFSRAWSRLTKREGDQEEQAAA TMIAGISTGT PSTPLET KG +DGRTEGD+
Sbjct:   14 DWNESNQIFWANALDCFSRAWSRLTKREGDQEEQAAAATMIAGISTGTMPSTPLETNKGGVDGRTEGDE 82
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18575.5815.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX05_9PHAE1.980e-3288.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18575contigEcto-sp13_S_contig18575:734..2786 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1386
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-26_004860.1
Cds size189
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.3743904-UTR-Ecto-sp13_S_contig18575:733..19071681462953.3743904-UTR-Ecto-sp13_S_contig18575:733..1907Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18575 734..1907 -
1681462953.4039629-UTR-Ecto-sp13_S_contig18575:2763..27861681462953.4039629-UTR-Ecto-sp13_S_contig18575:2763..2786Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18575 2764..2786 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.383753-CDS-Ecto-sp13_S_contig18575:1907..20211681462953.383753-CDS-Ecto-sp13_S_contig18575:1907..2021Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18575 1908..2021 -
1681462953.3952978-CDS-Ecto-sp13_S_contig18575:2688..27631681462953.3952978-CDS-Ecto-sp13_S_contig18575:2688..2763Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18575 2689..2763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18575.5815.1prot_Ecto-sp13_S_contig18575.5815.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18575 1908..2763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18575.5815.1

>prot_Ecto-sp13_S_contig18575.5815.1 ID=prot_Ecto-sp13_S_contig18575.5815.1|Name=mRNA_Ecto-sp13_S_contig18575.5815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=63bp
MFWANALECFSRAWSRLTKREGDQEEQAAATTMIAGISTGTTPSTPLETK
KGPMDGRTEGDK*
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mRNA from alignment at Ecto-sp13_S_contig18575:734..2786-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18575.5815.1 ID=mRNA_Ecto-sp13_S_contig18575.5815.1|Name=mRNA_Ecto-sp13_S_contig18575.5815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2053bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18575:734..2786- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGACTGGAATGAATCAAACCAGATGTTCTGGGCCAACGCGCTTGAATGT
TTCTCGCGGGCGTGGTCGAGGCTAACGAAGAGAGAGGGAGATCAAGAGGT
GAGCGAAGTATGACGATACGGAAGACGTATCACTTTGTTGCTTGCATACA
TACGCGTGTGCATTCCATATGCTGCCAACTGGTTGACGATAGTACGGAAT
TACGAGCTTCGCACCAATCTCATTTGGAGATAGTGGTGGCACTTGTCTCG
TTCACAGGGCTTTTCCGTTGTTCAAACTGCACAAACTGGTCGTTTTGCGC
AAGCGGGCATCACAGCAGGGAACGAACGCGTGCCGTACCCACGTGCATTA
TTGGCTTTCCTTTGATCCCAACACTGCACGATTCTTTGAGTAGGGCAACC
ATATAGGTGGCGATACTCCCGGGATACATCGTCATGGCTGCGATAGTACG
GTTTTTTCTTCCGCCATCACAATTCACACCGTCGGTGGCGTAATCATTGC
TGCTATCAATGCTGCCCTCGATACTTGCTTGCAACCCTGCCTGCGATCGG
CGCTCACAGCAGAAACCACCTAAACAACCGTATTCGAAGTTCACCGGCAG
GCGGAGGGGGGGAGGGGAGAGGTACGCGACAACCGCTCTAGCACGATGGA
GCTTTGCTACTAATGATGAAAACTTTGCCTGTCTAAGTCAAACGCCCGTG
TGCTCACCACCTTCAATCATTCTCTCTCCCGATTCCCTCGAAACAAAAAA
TAACCGTTTTGGCAGGAACAAGCAGCTGCAACGACAATGATAGCAGGAAT
TTCCACCGGCACTACGCCCAGCACTCCGCTAGAAACAAAAAAGGGGCCCA
TGGACGGAAGAACGGAAGGCGATAAGTGATGTCTCGGCGAAGAAGCCGCC
CCCTCTTCCACTACCCTCAGTACTCGTTGTCTTCTTATACCTCTTGTTTT
TCTCTGCAGGGTTACCCAGCATCGATTTGTATGGTTTTAGTTTTGGTGTA
GCCTTCGTGGGTCATCACGCCCACCTTATCCTGAGGTTCTCAAGTCTGCC
GTATTTACTCTTTTTAGCAGCTTGGATTGATTAATCAGTTTCGTATTTGA
GTGTTAGACATAGCATATAGGTCGTGGCGCGACCTACACGCGCGAAAAAA
ATGCAGCAGCAGGGATTGAAGCTTTTCACAACGACACCGGACAAGATTGC
CGGTGACCAAGGCGCAACTGAGACTACATATGTATGTACGTATTGTATAC
ACATGTGCAAAAAATGCGCATAGATAGTAAGCAGTGAGTGACAGGAACGT
AGTGAGGGGTAACCACCAGAAAAAACAGGATTGTACTCCTTAGCCTTTGC
CTTGAAACTTAGCACCCGAGCATGACAGGGATGGCGTTCTAGGTAATGCT
TGAGCCAATGGCTAAAAGGTATTTCATACAAACTACGGAACGGGGGGGAT
CAAGGGTTGGTTGGTGTATAGGTAGGTTTGTATGTTTCTTCTTTTTGCAG
GAGTGAACGAGTGAGTTGAGGTGAAGGTAAAACAAAAATAGAAACAACCG
TTTCTCACGGCGCTGGGAGATTACCGGCAGCAGTCCAGTTGTACCGGGTG
ACATGCACACAAAAGTGTTGCTTTCTCACTCTTCGGTCCTCTGCTAGGAA
GTAGTACGGTTTCGAGCCTTTGCCGAAACAACAACAAACAAATGTAGATG
GATTGTGGTGTTTCTTACTAGAGACTGCACCACTCACTGCCGTACGTACA
TCATGTGTTTGCTTGAAGGTCAGCCGGGGTCACAAAGAGGAGGAGGAGGC
CACGAGGCCCACACAAGATTTGGTTTCAATGTCGTGTTTTTTCGAAGGCA
GTGGCTTTTGGGACAGAATTGGTCGAAACGCTTGAGGATCAGAGTGTTGA
GTGCGAGTTTGGCAATGTCGTGATAAGGCGTGGTTTCCATCAGGGGTACG
GAACACACAGATAGACAGACAGATGGACTGCCGCTTTCGTTGCGGTCTCT
TGCTCTACGAATACCGAACACCAGCTCGAATGCAGCAGCACATCAGAATC
GAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18575:734..2786-

>mRNA_Ecto-sp13_S_contig18575.5815.1 ID=mRNA_Ecto-sp13_S_contig18575.5815.1|Name=mRNA_Ecto-sp13_S_contig18575.5815.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=189bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18575:734..2786- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCTGGGCCAACGCGCTTGAATGTTTCTCGCGGGCGTGGTCGAGGCT
AACGAAGAGAGAGGGAGATCAAGAGGAACAAGCAGCTGCAACGACAATGA
TAGCAGGAATTTCCACCGGCACTACGCCCAGCACTCCGCTAGAAACAAAA
AAGGGGCCCATGGACGGAAGAACGGAAGGCGATAAGTGA
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