mRNA_Ecto-sp13_S_contig18570.5814.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18570.5814.1
Unique NamemRNA_Ecto-sp13_S_contig18570.5814.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: D7G2K6_ECTSI (P4Hc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 1.000e-60
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI
Sbjct:  177 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 268
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: B8C6N2_THAPS (P4Hc domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C6N2_THAPS)

HSP 1 Score: 141 bits (355), Expect = 5.840e-41
Identity = 65/92 (70.65%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVGRY  SQ+Y  H+DAFDL+ EDGRRFA NGGQR  TVL YLNDVP GG T+FP L ++VQPR+GMAVVFFP+TLDG+LD   LHAA PA+
Sbjct:   77 QVGRYLPSQQYLQHFDAFDLSNEDGRRFAANGGQRTITVLTYLNDVPRGGATSFPNLNIQVQPRRGMAVVFFPSTLDGLLDKMALHAAMPAV 168
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: A0A835YJM0_9STRA (Fe2OG dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM0_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.410e-39
Identity = 65/92 (70.65%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVGRY  +Q YA H DAFDL T+DG RFAQNGGQRV TVL+YLNDVP GG T+FP+LG+ V PR+GMAVVFFP+TLDG  D   LH AEPA+
Sbjct:  100 QVGRYLPTQFYAPHLDAFDLKTQDGMRFAQNGGQRVATVLIYLNDVPRGGNTSFPRLGLSVTPRRGMAVVFFPSTLDGCADELALHTAEPAV 191
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: A0A8J9TA93_PHATR (Hypothetical protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9TA93_PHATR)

HSP 1 Score: 136 bits (342), Expect = 9.830e-39
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVGRY+ SQ+Y  H+DAFDL TEDG RFA NGGQR  TVL+YLNDV  GG T FP L + VQPR+GMA+VFFPAT+DG+LD   LHAA PA+
Sbjct:   82 QVGRYFPSQQYLQHYDAFDLGTEDGLRFAANGGQRTITVLLYLNDVARGGATRFPALNLDVQPRQGMALVFFPATIDGMLDRMALHAAMPAV 173
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: A0A1Z5JHE4_FISSO (P4Hc domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHE4_FISSO)

HSP 1 Score: 137 bits (346), Expect = 1.590e-38
Identity = 63/92 (68.48%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVGRY+  +KY  H+DAFDL+TEDGRRFA NGGQR  TVL+YLNDV  GG T FP L + +QPR+GMA+VFFPAT+DG+LD   LHAA PAI
Sbjct:   99 QVGRYFYQEKYLQHFDAFDLSTEDGRRFAANGGQRTVTVLIYLNDVMRGGATRFPALNLDIQPRRGMALVFFPATVDGMLDKMALHAALPAI 190
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: A0A7S2PH63_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PH63_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.160e-38
Identity = 64/91 (70.33%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPA 273
            QVGRYY SQ+Y  H+DAFDL+ EDG RFA NGGQR  TVL YLNDVP GG T+FP L ++V+P+KGMA+VFFPATLDG+LD   LHAA PA
Sbjct:  179 QVGRYYPSQQYLQHFDAFDLSNEDGIRFASNGGQRTITVLTYLNDVPRGGSTSFPNLNIQVRPQKGMALVFFPATLDGLLDKMALHAALPA 269
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: A0A7S1BD04_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BD04_9STRA)

HSP 1 Score: 143 bits (361), Expect = 2.900e-38
Identity = 70/92 (76.09%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVG+Y  SQKY  H DAFDL  EDG RFAQNGGQRV TVL YLNDVP GG T FP LG  VQPRKGMAVVFFPAT+DGVLD   LH+AEPAI
Sbjct:  477 QVGQYLPSQKYVQHHDAFDLTNEDGIRFAQNGGQRVVTVLTYLNDVPRGGHTTFPILGFSVQPRKGMAVVFFPATVDGVLDPSALHSAEPAI 568
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: A0A7S1UYE3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYE3_9STRA)

HSP 1 Score: 140 bits (353), Expect = 3.570e-38
Identity = 64/92 (69.57%), Postives = 74/92 (80.43%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVGRY+ SQ+Y  H+DAFDL+ EDGRRFA NGGQR  TVLVYLNDV  GG T+FP L + VQPR+GMA+VFFPAT+DG LD   LHAA PA+
Sbjct:  270 QVGRYFPSQQYLQHFDAFDLSNEDGRRFASNGGQRTVTVLVYLNDVHQGGATSFPALNLDVQPRRGMAIVFFPATVDGYLDKMALHAANPAV 361
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: A0A8J2S9J3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J3_9STRA)

HSP 1 Score: 136 bits (342), Expect = 4.220e-38
Identity = 62/92 (67.39%), Postives = 75/92 (81.52%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVGRY   + Y  H+DAFD ++ DGRRFAQNGGQRV TVLVYLNDV  GGCT+F +LG+ +QP+KG A+VFFPA+LDG+LD   LHAAEPA+
Sbjct:  124 QVGRYRGGEFYKAHYDAFDTSSPDGRRFAQNGGQRVATVLVYLNDVARGGCTSFSKLGLSIQPKKGTALVFFPASLDGMLDQHYLHAAEPAL 215
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BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Match: A0A7S2YBM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YBM7_9STRA)

HSP 1 Score: 135 bits (339), Expect = 7.410e-38
Identity = 63/92 (68.48%), Postives = 73/92 (79.35%), Query Frame = 1 
Query:    1 QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI 276
            QVGRY+ SQ+Y  H+DAFDL TEDG RFA NGGQR  TVL+YLND   GG T FP L ++VQPR+GMA+VFFPAT+DG+LD   LHAA PAI
Sbjct:  112 QVGRYFASQQYLQHFDAFDLGTEDGLRFAANGGQRTVTVLIYLNDCERGGGTRFPALNLEVQPRRGMALVFFPATVDGMLDKMALHAALPAI 203
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18570.5814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2K6_ECTSI1.000e-60100.00P4Hc domain-containing protein n=1 Tax=Ectocarpus ... [more]
B8C6N2_THAPS5.840e-4170.65P4Hc domain-containing protein (Fragment) n=1 Tax=... [more]
A0A835YJM0_9STRA1.410e-3970.65Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]
A0A8J9TA93_PHATR9.830e-3968.48Hypothetical protein (Fragment) n=2 Tax=Phaeodacty... [more]
A0A1Z5JHE4_FISSO1.590e-3868.48P4Hc domain-containing protein n=2 Tax=Fistulifera... [more]
A0A7S2PH63_9STRA2.160e-3870.33Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A7S1BD04_9STRA2.900e-3876.09Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S1UYE3_9STRA3.570e-3869.57Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A8J2S9J3_9STRA4.220e-3867.39Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2YBM7_9STRA7.410e-3868.48Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18570contigEcto-sp13_S_contig18570:745..1405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score197.2
Seed ortholog evalue3.3e-48
Seed eggNOG ortholog2880.D7G2K6
Model size276
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
EC1.14.11.2
Cds size276
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.3270407-CDS-Ecto-sp13_S_contig18570:744..9401681462953.3270407-CDS-Ecto-sp13_S_contig18570:744..940Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18570 745..940 +
1681462953.3446376-CDS-Ecto-sp13_S_contig18570:1325..14051681462953.3446376-CDS-Ecto-sp13_S_contig18570:1325..1405Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18570 1326..1405 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18570.5814.1prot_Ecto-sp13_S_contig18570.5814.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18570 745..1405 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18570.5814.1

>prot_Ecto-sp13_S_contig18570.5814.1 ID=prot_Ecto-sp13_S_contig18570.5814.1|Name=mRNA_Ecto-sp13_S_contig18570.5814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
QVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGG
CTAFPQLGMKVQPRKGMAVVFFPATLDGVLDSRLLHAAEPAI
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mRNA from alignment at Ecto-sp13_S_contig18570:745..1405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18570.5814.1 ID=mRNA_Ecto-sp13_S_contig18570.5814.1|Name=mRNA_Ecto-sp13_S_contig18570.5814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=661bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18570:745..1405+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGGGCGCTACTATACTTCCCAGAAGTACGCTAACCACTGGGACGC
ATTCGACCTCAACACAGAGGACGGCAGGCGTTTCGCACAGAACGGGGGGC
AGCGCGTGTGCACCGTGCTGGTGTACCTCAACGACGTTCCCTCCGGAGGG
TGCACTGCTTTCCCTCAGCTGGGAATGAAGGTTCAGCCAAGGAAAGGTGC
GTTGTTTCAAGCTTGGGTGGTCGGTGGCTCTTGGTTGCATGCTTGCTATG
CGGCAGAATACATTGCCGGAGACCTAACGTATCTCGAGGTCTTTTTTCGC
TGCTGCTGCTGCTGCCGCTGCTGAATGGACAATGCATCCAAGAAACTGCG
GAACGTAGTCGCAGCCTAACAGTGGAGTACTTCGCGTTGGGTACAATGTC
AGTCGGGGTCTCCTCATCCCCTGGGCCTCTGCGGGACACTACCCACCTGC
GCGCGCAATTGCACCCGTCTTTCACGTCTGTGTCGACCTCGCCCTGCCCA
CCAAACTCGTCCTTGGTTCCTAAACGTACTCGCTTTGCTTATCACTTGCA
TGCTCGTTTCGGTGTGGGGGACTTTCTGAAGGCATGGCCGTAGTCTTTTT
CCCGGCCACGCTGGATGGAGTGCTGGACTCGAGACTTCTGCACGCGGCCG
AACCGGCCATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18570:745..1405+

>mRNA_Ecto-sp13_S_contig18570.5814.1 ID=mRNA_Ecto-sp13_S_contig18570.5814.1|Name=mRNA_Ecto-sp13_S_contig18570.5814.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18570:745..1405+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGGGCGCTACTATACTTCCCAGAAGTACGCTAACCACTGGGACGC
ATTCGACCTCAACACAGAGGACGGCAGGCGTTTCGCACAGAACGGGGGGC
AGCGCGTGTGCACCGTGCTGGTGTACCTCAACGACGTTCCCTCCGGAGGG
TGCACTGCTTTCCCTCAGCTGGGAATGAAGGTTCAGCCAAGGAAAGGCAT
GGCCGTAGTCTTTTTCCCGGCCACGCTGGATGGAGTGCTGGACTCGAGAC
TTCTGCACGCGGCCGAACCGGCCATA
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