mRNA_Ecto-sp13_S_contig18568.5811.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18568.5811.1
Unique NamemRNA_Ecto-sp13_S_contig18568.5811.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18568.5811.1 vs. uniprot
Match: D7FTN3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTN3_ECTSI)

HSP 1 Score: 186 bits (472), Expect = 1.420e-56
Identity = 102/137 (74.45%), Postives = 102/137 (74.45%), Query Frame = 1 
Query:  388 MSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEGKHGSGFTALHVAAMRNDPNTIRVLLNMKVDVNSTNMSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTISPGSILDVPLRRPRR 798
            MSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEGKH                                 MSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTIS GSILDV LRRPRR
Sbjct:    1 MSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEGKH---------------------------------MSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVKDTISSGSILDVSLRRPRR 104
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BLAST of mRNA_Ecto-sp13_S_contig18568.5811.1 vs. uniprot
Match: A0A7S2XV99_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XV99_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.230e-33
Identity = 74/173 (42.77%), Postives = 104/173 (60.12%), Query Frame = 1 
Query:  283 IARDGCLSQCENDRHLV--RDPQLYLRWTPIYPHPLPMSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPIEGKHGSGFTALHVAAMRNDPNTIRVLLNMKVDVNSTNMSGATPLSCAMGGAGGPDGECATLLRASGGLVRLVK-DTISPGSILDVPLRRP 792
            IARD  +   + D  +   RD  L ++W P+  HPLP+S E F N+R +RRL  L P  R L AAA GRAWC+EE + +GCPIE  +G G+  LH+AA       +RVLLN+ VD N + M+G  PL+ A+        +CATL+R +GG+++    D +    ILDV +R+P
Sbjct:   18 IARDESIIFQKEDAEIEKNRDHMLLVKWRPLLRHPLPVSEEKFANDRLMRRLNGLHPSKRALLAAAEGRAWCIEECYIKGCPIEVTNGEGYKPLHLAASLGHVEAVRVLLNIGVDPNDSTMTGFLPLALAVAS---NHTQCATLIREAGGVMQAPDPDQVQLLRILDVDIRQP 187
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18568.5811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTN3_ECTSI1.420e-5674.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XV99_9STRA1.230e-3342.77Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18568contigEcto-sp13_S_contig18568:348..3463 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size798
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-11_001750.1
Cds size723
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18568.5811.1prot_Ecto-sp13_S_contig18568.5811.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18568 423..3463 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.0248394-UTR-Ecto-sp13_S_contig18568:347..4221681462953.0248394-UTR-Ecto-sp13_S_contig18568:347..422Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18568 348..422 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462953.0367014-CDS-Ecto-sp13_S_contig18568:422..6111681462953.0367014-CDS-Ecto-sp13_S_contig18568:422..611Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18568 423..611 +
1681462953.046572-CDS-Ecto-sp13_S_contig18568:1674..18091681462953.046572-CDS-Ecto-sp13_S_contig18568:1674..1809Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18568 1675..1809 +
1681462953.0561502-CDS-Ecto-sp13_S_contig18568:2020..21581681462953.0561502-CDS-Ecto-sp13_S_contig18568:2020..2158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18568 2021..2158 +
1681462953.066256-CDS-Ecto-sp13_S_contig18568:2745..28441681462953.066256-CDS-Ecto-sp13_S_contig18568:2745..2844Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18568 2746..2844 +
1681462953.0764308-CDS-Ecto-sp13_S_contig18568:3301..34631681462953.0764308-CDS-Ecto-sp13_S_contig18568:3301..3463Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18568 3302..3463 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18568.5811.1

>prot_Ecto-sp13_S_contig18568.5811.1 ID=prot_Ecto-sp13_S_contig18568.5811.1|Name=mRNA_Ecto-sp13_S_contig18568.5811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=241bp
MPLSAGKNYTRTAIEDGLRREANQAASTEATLTPFQKALAESTRRRELTA
KREKALQLRQSSKVDVQKLIARDGCLSQCENDRHLVRDPQLYLRWTPIYP
HPLPMSYELFENERELRRLAVLPPEDRVLAAAAAGRAWCVEELFAQGCPI
EGKHGSGFTALHVAAMRNDPNTIRVLLNMKVDVNSTNMSGATPLSCAMGG
AGGPDGECATLLRASGGLVRLVKDTISPGSILDVPLRRPRR
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mRNA from alignment at Ecto-sp13_S_contig18568:348..3463+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18568.5811.1 ID=mRNA_Ecto-sp13_S_contig18568.5811.1|Name=mRNA_Ecto-sp13_S_contig18568.5811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18568:348..3463+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGGGAGGATAAGGAGAGGCGGGTGTTCGCGTGCTCAAAACTATCCA
CGAGAAGAGTACGCCCGCGGAGGATATGCCTCTCTCTGCAGGAAAAAATT
ATACACGGACTGCGATCGAAGATGGCCTACGTCGAGAAGCCAACCAAGCA
GCAAGCACCGAGGCCACCCTGACGCCCTTCCAGAAAGCACTAGCCGAGTC
TACGAGGCGGCGAGAACTGACCGCGAAGAGAGAGAAAGCCCTACAGCTTA
GGCAGAGCTCGAAGGTGGACCGGGAGCTTCAGCGGGCTGGTGTACCTTTC
CTCATTGTTCACCCGCAGTCCAACAGCCTACAACCGTGGGAGACTGCTGA
CTGTAGTCTACAAAACTTTGCTGTTCCAACAGTCACGACTTTTCTCCTGT
CCCAGCTGTTCTCGGCACCATGTTTGCACCGTTCAGTGGAACGTGACTTG
GCGCACAAGCCCAAGGGTAGCTCAACAGGGATTCTCTATCTTTCGTCCAA
ACCTGGGTACGTTGAGACGGGAGGGGTGCAACTCAGCCGTTGCCTACTTG
TACTAAGCATTTTTCTCTTCGCCAAACTGATTTTACGACCCATGCCCTCT
TCTTTTGTGCGAGTATCTTCACTTTCACCAGCTCTTAGAACCGCAGGTTG
CCAAGAATGGAGGAGAATGATGCAAAAGTCGGTACGGACGATGCTCGCGG
CAACGTTATTGAGTTGCCTACAGGGAATGCAGACCCCGACCCTGTTGCCC
GTGCCCAACAACGCGGCGCCGTGTGCCGCTAACGTAACATGTTTTCACCC
GTCTACGGCCAGCCACGTACCTCTAGCTAGCGTCCTCTCCTAACGCGATA
CCATGAGAACGTCACTTCTGTACCCTCAGGTGTCTCATGCTTCGCTAGCC
TCGAACCCCCGCCCCAACGCAAGTCTGACAAGTTCGGGGGATTGGATCGT
GCATTCACGATACGGTGGCCAGAACATGGAGTTGAACAACGTTTTCGGAA
AGATGCGGTTGCTTCTATGCAAATTTTCTCACAGTGCGTGCCCCACGAAC
TGTGGAGAGGCTGGAAGAGTCCTAGCGCGGTTCGCAGAACGAATGACCCA
CCCTTCACTCAACTCGTGCATGCGGATATTTGGGTAGGGTACCAATATAT
TTTGTGAGAACCTGACGTGTTCTATTTGACCCTGCCGCCTGTTTGTTGAC
AGCACTCCTCTAGGGCATATGTTCTGCCGCGTTCAAGTACGACGAAACAT
CAGCCATAACGCCCCCACCCTGCCCTCGTTGACGTGACACTTCTGTCTCT
TGCTCCGAAAATAAATGTCGAGCCCAGGTTGACGTCCAGAAACTAATCGC
TCGAGATGGCTGCCTGTCTCAGTGCGAGAATGACCGCCACCTGGTACGAG
ATCCCCAGCTCTACTTACGGTGGACACCGATCTATCCGCATCCTCTTCCA
ATGAGCTACGAGGTATGGCCTTGGTACCAACCCTTTTTTTTTTTTCATCA
CAGGCAATATCAACGCTTCGGTGTCACCCCGGCCGTCTCTCTGTCAACAT
GTTGAGCATGTCTATGTGGCCGCATGTAGACACGAACAAACGTGCCACGT
ATTGCCGATCAACCCACCGCCGACACCATTCTAACCGACTGGCTGACATC
TGCCTTTCGAACCGCTGCTAAAGCTGTTTGAGAACGAGCGTGAACTTCGG
CGTCTGGCTGTCTTGCCTCCCGAGGATCGAGTTCTCGCCGCTGCGGCTGC
TGGTCGCGCTTGGTGCGTGGAGGAGCTCTTCGCGCAGGGGTGCCCGATCG
AGGGCAAGCACGTACGTGTTCCCTACCGTACAGCTGGCGTGAGCGTTCTC
GAGACGTCGCTTTGGGGTCGAGGCTCATTGTCCTGTTTCATCACCGCCGT
CGAGCATAGGTCATCATTTAGCAATACGTGTAGGTCCGCGGTTGAGGTGT
GCTTCTTTATCGATTTTTCTTGTTCTTCACCAGTCTAAGCCTTCGTTTCC
TGGACGTTTGCTGCTTCATCGCGGGCACCAGCTGTATATCGTGGCGTGCT
CTCCGTGTTTGTCGTTCGGGCCCTCATGCTCGACGCGACACTAGAACGAC
CCCTCGATTGGCCACAATCCGCGCTTTGCATAGCCCGTGGGGGGGTTCCG
TGCACCAGACTTGAACGTTGGACATGGTGCCCTTTGACACGGTTGAGTAT
AATCTCGATGGGAGTGTGGCGAGAATGTTCCATGCTCTAGTCGCCTGTCT
CCAAGCGAAGATATCATGCTGTTCTCACAGACCTCAGCTGTATCGTTCCC
CTCCTCATTGGTAGTGCCGTAGTTCTGGTCCCGTTTTCCGTGATATCGGC
CACCCGTTTCTGCTGCAACTAATTCGCCGGTCCCGTTCGCATTCTCAGGG
GTCAGGTTTTACGGCCCTTCACGTAGCGGCCATGAGAAACGACCCAAATA
CCATAAGGGTTCTCCTAAACATGAAGGTCGACGTCAATTCCACGAATGTG
AGGGAAATGGGTAAAATGTCAATCATCGAAGAGGTAGAGGGTGGCGAGAA
GCTTTGTCCGCTTCGAGGCCAAAAGAGGCTACGCTGAGCGGGGTGTGACT
GAAGCAAATATGATATCCATCCCCTACCGTCGGGTACGCTCTACCGACGT
CGAACGATGACCTATGCAGTGCTGGCAATACCATTCTTCTTCCGTCCTCA
GCTGGGGGCGTAAAAATCTCTCAAGGCATGCTGTCCCAAATCCGACACAA
AGTTAAACATGGGTGCTTGCGGCGTCTCTAGCATCAGATACGGAAATACT
TTGGTGGCAGTCTCGTAGCGCTTCGGCATGCTCGGTGACTCACAATACTA
CTACCGTATGTTTTACGAAACATTTATGACTTCGATGGACCTTCCCCACT
TTCATAACTACACTCCCAAACCCCTTCCCCCCCCCGTCCGTTGTTATTTT
GCAGATGAGCGGGGCAACTCCACTTTCATGCGCCATGGGAGGCGCAGGAG
GACCAGACGGAGAGTGCGCCACCTTGCTGCGCGCATCCGGAGGGCTGGTT
CGTCTAGTAAAGGACACGATCAGTCCAGGGTCCATTCTTGACGTTCCCTT
GAGACGACCCCGTAGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18568:348..3463+

>mRNA_Ecto-sp13_S_contig18568.5811.1 ID=mRNA_Ecto-sp13_S_contig18568.5811.1|Name=mRNA_Ecto-sp13_S_contig18568.5811.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=723bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18568:348..3463+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTCTCTCTGCAGGAAAAAATTATACACGGACTGCGATCGAAGATGG
CCTACGTCGAGAAGCCAACCAAGCAGCAAGCACCGAGGCCACCCTGACGC
CCTTCCAGAAAGCACTAGCCGAGTCTACGAGGCGGCGAGAACTGACCGCG
AAGAGAGAGAAAGCCCTACAGCTTAGGCAGAGCTCGAAGGTTGACGTCCA
GAAACTAATCGCTCGAGATGGCTGCCTGTCTCAGTGCGAGAATGACCGCC
ACCTGGTACGAGATCCCCAGCTCTACTTACGGTGGACACCGATCTATCCG
CATCCTCTTCCAATGAGCTACGAGCTGTTTGAGAACGAGCGTGAACTTCG
GCGTCTGGCTGTCTTGCCTCCCGAGGATCGAGTTCTCGCCGCTGCGGCTG
CTGGTCGCGCTTGGTGCGTGGAGGAGCTCTTCGCGCAGGGGTGCCCGATC
GAGGGCAAGCACGGGTCAGGTTTTACGGCCCTTCACGTAGCGGCCATGAG
AAACGACCCAAATACCATAAGGGTTCTCCTAAACATGAAGGTCGACGTCA
ATTCCACGAATATGAGCGGGGCAACTCCACTTTCATGCGCCATGGGAGGC
GCAGGAGGACCAGACGGAGAGTGCGCCACCTTGCTGCGCGCATCCGGAGG
GCTGGTTCGTCTAGTAAAGGACACGATCAGTCCAGGGTCCATTCTTGACG
TTCCCTTGAGACGACCCCGTAGA
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