mRNA_Ecto-sp13_S_contig18564.5810.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18564.5810.1
Unique NamemRNA_Ecto-sp13_S_contig18564.5810.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: A0A6H5JUE3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUE3_9PHAE)

HSP 1 Score: 144 bits (364), Expect = 1.590e-43
Identity = 59/62 (95.16%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:  109 MLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMTCGSGPEYFPFTINCYRGCCEETTR 294
            MLRCNTTGANETYCLDECGGYEGE+SG+DH LYRYYMTCGSGPEYFPFTINCYRGCCEETTR
Sbjct:    1 MLRCNTTGANETYCLDECGGYEGELSGIDHFLYRYYMTCGSGPEYFPFTINCYRGCCEETTR 62
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: D8LCJ6_ECTSI (YHYH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCJ6_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 8.330e-35
Identity = 63/98 (64.29%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 QAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMTCGSGPEYFPFTINCYRGCCEETTR 294
            QAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEML                                   TCGSGPEYFPFTINCYRGCCEETTR
Sbjct:   58 QAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEML-----------------------------------TCGSGPEYFPFTINCYRGCCEETTR 120
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: D7FUL4_ECTSI (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUL4_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 5.490e-33
Identity = 54/84 (64.29%), Postives = 60/84 (71.43%), Query Frame = 1 
Query:   28 ADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMTCGSGPEYFPFTINCYRGCC 279
            A +HSPLLGW+YDGFPIYGQLGP GVEM  C   GA+ T CLD C GYE  I   D   YRYY +CG    +FPFT+NCYRGCC
Sbjct:  207 AGEHSPLLGWSYDGFPIYGQLGPGGVEMKMCGADGADSTVCLDLCSGYEASID-EDTFTYRYYTSCGFDESFFPFTLNCYRGCC 289
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: A0A6H5KP42_9PHAE (YHYH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KP42_9PHAE)

HSP 1 Score: 125 bits (314), Expect = 4.550e-32
Identity = 51/82 (62.20%), Postives = 60/82 (73.17%), Query Frame = 1 
Query:   34 DHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMTCGSGPEYFPFTINCYRGCC 279
            +HSP+LGW+YDGFPIYGQLGP GVEM  C   GA++T CLD C GYE  I   D   YRYY +CG    +FPFT+NC+RGCC
Sbjct:  194 EHSPVLGWSYDGFPIYGQLGPGGVEMKMCGADGAHDTACLDLCSGYEATID-EDEFTYRYYTSCGFDESFFPFTLNCFRGCC 274
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: A0A8J2X5K3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X5K3_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.250e-30
Identity = 58/106 (54.72%), Postives = 70/106 (66.04%), Query Frame = 1 
Query:    1 QAMKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMTCGSG----------PE----YFPFTINCYRGC 276
            QA KA  ++ D HS  +GWA DGFPIYG LGP GVE+  C T+GA+ TYC DECGGYEGE+ GVD+  YRYY+T   G          P+    Y+P+TI CYRGC
Sbjct:  175 QANKAAPIS-DGHSAQVGWAEDGFPIYGPLGPGGVEIRNCGTSGAHSTYCQDECGGYEGELPGVDNYKYRYYITGKVGDLNTLPSTPMPDSEELYYPYTIRCYRGC 279
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: A0A8J2WVX8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WVX8_9STRA)

HSP 1 Score: 115 bits (289), Expect = 9.450e-29
Identity = 52/96 (54.17%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:   28 ADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMT--------CGSGPE------YFPFTINCYRG 273
            A+ HSP +GWA DGFPIYG LGP GVE+  C  +GA+ TYC D CGGYEGE+ GVD+  YRYY+T          S P+      YFP+TI C+RG
Sbjct:  200 ANGHSPQIGWAQDGFPIYGPLGPGGVEIRNCGASGADSTYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 295
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: A0A8J2X3U2_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3U2_9STRA)

HSP 1 Score: 113 bits (282), Expect = 3.540e-27
Identity = 51/96 (53.12%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:   28 ADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMT--------CGSGPE------YFPFTINCYRG 273
            A  HSP +GWA DGFPIYG  GP GVE+  C  +GA+ TYC D CGGYEGE+ GVD+  YRYY+T          S P+      YFP+TI C+RG
Sbjct:  220 AGGHSPQIGWAQDGFPIYGPFGPGGVEIRNCGASGADATYCQDACGGYEGELDGVDNYKYRYYVTGKVGDLNALPSNPKPDSEALYFPYTIRCHRG 315
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: A0A7S3ZWN8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZWN8_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.930e-26
Identity = 52/101 (51.49%), Postives = 62/101 (61.39%), Query Frame = 1 
Query:   28 ADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMT-----CGSGPEY---------FPFTINCYRGCCEET 288
            A  HS  +GWA DGFPIYG LGP GVE+  C  +GA+ TYC D+CGGYEGE+  VD+  YRYY+T       S P Y         FPFTI C+RG   +T
Sbjct:  243 AGGHSAQIGWAQDGFPIYGPLGPGGVEIRNCGASGAHATYCQDKCGGYEGELPDVDNYKYRYYITGKVNDLNSLPSYPKPDNVDLYFPFTIRCHRGVIIKT 343
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: A0A8J2X2K6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X2K6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.720e-26
Identity = 51/96 (53.12%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:   28 ADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMT-----CGSGPEY---------FPFTINCYRG 273
            +D HS  +GWA DGFPIYG LGP GVE+  C  +GA+ TYC D+CGGYEGE+  VD+  YRYY+T       S P Y         FPFTI C+RG
Sbjct:  212 SDGHSSQIGWAQDGFPIYGPLGPGGVEIRNCGASGAHATYCQDKCGGYEGELPDVDNYKYRYYITGKVNDLNSLPSYPKPDDLDLYFPFTIRCHRG 307
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BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Match: A0A8J2SB93_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SB93_9STRA)

HSP 1 Score: 107 bits (267), Expect = 9.340e-26
Identity = 49/96 (51.04%), Postives = 60/96 (62.50%), Query Frame = 1 
Query:   28 ADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLDECGGYEGEISGVDHLLYRYYMT--------CGSGPE------YFPFTINCYRG 273
            A+ HSP +GWA DGFPIYG  GP GV++  C + GA+ TYC DECGG E E+ GVD   YRYY+T          S P+      YFP+TI C+RG
Sbjct:  188 ANGHSPQIGWAQDGFPIYGPYGPEGVQIQNCGSAGAHATYCQDECGGLEMELDGVDSYKYRYYITGKVGDLESLPSNPKPDSEALYFPYTIRCHRG 283
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18564.5810.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUE3_9PHAE1.590e-4395.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCJ6_ECTSI8.330e-3564.29YHYH domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FUL4_ECTSI5.490e-3364.29YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A6H5KP42_9PHAE4.550e-3262.20YHYH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A8J2X5K3_9STRA5.250e-3054.72Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2WVX8_9STRA9.450e-2954.17Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2X3U2_9STRA3.540e-2753.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S3ZWN8_9STRA1.930e-2651.49Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A8J2X2K6_9STRA2.720e-2653.13Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A8J2SB93_9STRA9.340e-2651.04Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18564contigEcto-sp13_S_contig18564:254..2448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score129.0
Seed ortholog evalue1.2e-27
Seed eggNOG ortholog2880.D7FUL4
Model size297
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.YHYH protein
EggNOG OGs2CZR0@1,2SBB2@2759
Cds size291
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.9521997-UTR-Ecto-sp13_S_contig18564:253..2591681462952.9521997-UTR-Ecto-sp13_S_contig18564:253..259Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18564 254..259 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.9631255-CDS-Ecto-sp13_S_contig18564:259..3161681462952.9631255-CDS-Ecto-sp13_S_contig18564:259..316Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18564 260..316 +
1681462952.9729118-CDS-Ecto-sp13_S_contig18564:1111..11621681462952.9729118-CDS-Ecto-sp13_S_contig18564:1111..1162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18564 1112..1162 +
1681462952.98334-CDS-Ecto-sp13_S_contig18564:1673..17781681462952.98334-CDS-Ecto-sp13_S_contig18564:1673..1778Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18564 1674..1778 +
1681462952.993521-CDS-Ecto-sp13_S_contig18564:2370..24481681462952.993521-CDS-Ecto-sp13_S_contig18564:2370..2448Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18564 2371..2448 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18564.5810.1prot_Ecto-sp13_S_contig18564.5810.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18564 260..2448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18564.5810.1

>prot_Ecto-sp13_S_contig18564.5810.1 ID=prot_Ecto-sp13_S_contig18564.5810.1|Name=mRNA_Ecto-sp13_S_contig18564.5810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=97bp
MKAQNLTADDHSPLLGWAYDGFPIYGQLGPSGVEMLRCNTTGANETYCLD
ECGGYEGEISGVDHLLYRYYMTCGSGPEYFPFTINCYRGCCEETTR*
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mRNA from alignment at Ecto-sp13_S_contig18564:254..2448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18564.5810.1 ID=mRNA_Ecto-sp13_S_contig18564.5810.1|Name=mRNA_Ecto-sp13_S_contig18564.5810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2195bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18564:254..2448+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGCCATGAAAGCGCAGAACTTGACAGCGGACGACCACTCTCCGCTCCT
GGGCTGGGCCTATGTGAGTGCCTCGAAAAGTACTGCGGGTCTATTCAATT
GACTCTTCTCCTCCTGCGTCCAACGCTTCTTTCGTCCCTGCGCGGAACAT
TGTTCAGAAAGGGCGGATTTGGCACAGAGAATAGGTGATACTCATACCCA
ACACAGACACACGAACGAAGAAATATAACACGAAGACTTACAAATGTCAG
CAGCAGCGGAGGCAGCAGCAGTAACAACAACAACATGGACATCGACACCG
ACTTTGATATGTTAGGAAGACGCTGATGACGACAACGATACCGACGATGA
CGGCGACGACAGAAATAGCTTCAACAGGCGCAAGCAACAGCACTAGCAAT
ATTAGCAGCAACGGCAACGAATACACTCGAAGAAGCAGGACACAGGCTGT
GTCGTTTGCGTCTGCTACTACACACTCATACGGGTCCTTGTTCCTGAGCG
GCAGCAGCGAATCACGCCCCGGTTCACCGTCTCGATCGAGCCAGCGAACC
CGGCACCACGACTAAAGCATCGCAACCTGGGGTCCTCTAGCTGACTGACC
GTCAACCGAGACTGCGCGCTTTTCGGGAACAACAACAGACGGAAGATTCC
GGATCGGAACCGCCACATGACTGATGTTATTTGTTCCGAGAAATGTGTCT
CCAACGTTTGTAATCGTTCTCTGGAGAGATTACCCCGGCCGGCGTGGTTT
CGAGGTTCTCGACTCAACAGAAACGTGCGGGGACGGTGTTGGGTACATGA
GAAGTACCCCCACACGACAACATTGATATTGGGCCTCTCTTCGTAACCGC
CTACGCAGGATGGTTTTCCCATTTACGGGCAGCTAGGGCCCAGTGGAGTG
GAGATGCTGGTGAGATCAACTTACAATACTGTTGAATAGAAGCATATTCA
TGTATTTTTTTGTGTGGCGGTGCTTCCGTTGCTCTGTGTGTAATGGCGTC
TTGTTGTCTTTTGAATTCCTTACTGTACCCGAATGATAACCCGGTAGTTG
TCAACCTCCGCCTCCGGGACTTAAAGTATAAATGGTGCAACCGTAGTCAC
AAAAAGGACCGTTGAGGTCCCGTTAGAAAGCACGGGAGACGCGACCACAG
CAGGGTGAGGCGTGCTTCCGTCTCTTTTTCGCCGTCCTGTGCTCCTTACA
CCACGACGAAGAAAGAGGACAGTGAATAATACGCCTGTGTACCGAGAGGT
TCGATGCCAAGCCGTCCTCGACGTGAAAAAATTACCGGGTTGAGGTTGTA
TAACTTATTATGAAACCGGCGGCAGTAGTGGCAAATCAAAACATCATTGT
AAAACAAGCAACTCGTAGGCACTCACTCGCTGTTTCCGTATTTGCTGCTG
ACGACAACCTCACCGCACAGAGATGCAACACTACCGGAGCGAACGAAACG
TACTGCCTGGATGAGTGCGGGGGGTATGAAGGGGAAATATCCGGTGTCGA
CCACTTGCTGTACCGCTATTACATGGTGAGTGAAAAAATTAGGAGTCTTA
TTATAACACCGTCGGGCCTCTGGGAACTGTGCTGTTGCAGCGACAAAGAC
ATTCATGTGTACTTTCGCGGAAACATAGATCGGGAGAGTGGGTTGACTCT
AGGAGACAGCAGTAATACATGTAGGCACTGAAAGAAGAGAGTGACGCGGC
AGATGGTAATCGGAACCAAAGGTCTTGAGAAATGGCTGTAGGCGCTCTGC
CACAATAAGGCCTGGGACCTTCCACCAGAAATTGGCTTACTGCAGACGGT
GGCCTAAAGTTGCCTTTCGCTGGGAAAAAAGAATGGGCTGGATATGGCGG
GTATCGGAGAGGCTTCTGAAATCAATCTTTGCATCGGAAAGGGAATAACT
TCAACAGACACGCTGAGGTGTGATTACTATCAAAACAACAGCGAGTGCAA
AAAACATTACACTAAGACACGGGCATTTTGTTTAGTTCCTGCTTCGCAAA
CCTTTGCGTCGCTACACATCAAGCGCACCGAGTTGCTTCTCCCTCCATCG
CTCGACGTCGAGTTGGTCCTCACCGCACGTTTGTCGTCCTTGTCGTCCCC
GCAACGTGGGTGTCCAGACGTGTGGATCCGGCCCAGAGTATTTCCCGTTC
ACCATCAACTGCTACCGTGGGTGCTGCGAAGAAACAACGCGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18564:254..2448+

>mRNA_Ecto-sp13_S_contig18564.5810.1 ID=mRNA_Ecto-sp13_S_contig18564.5810.1|Name=mRNA_Ecto-sp13_S_contig18564.5810.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18564:254..2448+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAAGCGCAGAACTTGACAGCGGACGACCACTCTCCGCTCCTGGGCTG
GGCCTATGATGGTTTTCCCATTTACGGGCAGCTAGGGCCCAGTGGAGTGG
AGATGCTGAGATGCAACACTACCGGAGCGAACGAAACGTACTGCCTGGAT
GAGTGCGGGGGGTATGAAGGGGAAATATCCGGTGTCGACCACTTGCTGTA
CCGCTATTACATGACGTGTGGATCCGGCCCAGAGTATTTCCCGTTCACCA
TCAACTGCTACCGTGGGTGCTGCGAAGAAACAACGCGGTAA
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