mRNA_Ecto-sp13_S_contig18562.5808.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18562.5808.1
Unique NamemRNA_Ecto-sp13_S_contig18562.5808.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: A0A6H5KSW5_9PHAE (RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSW5_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 7.040e-15
Identity = 32/33 (96.97%), Postives = 32/33 (96.97%), Query Frame = 3 
Query:    3 LHHFWSSWHRQDVHRYRVYPPTRQAQTGVPDSG 101
            LHHFWSSWHRQDVH YRVYPPTRQAQTGVPDSG
Sbjct:  471 LHHFWSSWHRQDVHCYRVYPPTRQAQTGVPDSG 503
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: D7FRN2_ECTSI (RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRN2_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 8.880e-14
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRIL 99
            PYIIFGPPGTGKTCTVIESILQLVKLRPECRIL
Sbjct:  774 PYIIFGPPGTGKTCTVIESILQLVKLRPECRIL 806
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: A0A182M8L7_9DIPT (RNA helicase n=1 Tax=Anopheles culicifacies TaxID=139723 RepID=A0A182M8L7_9DIPT)

HSP 1 Score: 63.2 bits (152), Expect = 1.180e-10
Identity = 25/34 (73.53%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV 102
            PYI+FGPPGTGKTCT++E++LQ++KLRP+ RILV
Sbjct:  365 PYILFGPPGTGKTCTIVEAVLQILKLRPQSRILV 398
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: A0A182K9G5_9DIPT (RNA helicase n=1 Tax=Anopheles christyi TaxID=43041 RepID=A0A182K9G5_9DIPT)

HSP 1 Score: 61.2 bits (147), Expect = 5.620e-10
Identity = 25/34 (73.53%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV 102
            PYI+FGPPGTGKTCT++E++LQ+ KLRP+ RILV
Sbjct:  366 PYILFGPPGTGKTCTIVEAVLQIWKLRPKSRILV 399
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: A0A182SMM1_9DIPT (Uncharacterized protein n=1 Tax=Anopheles maculatus TaxID=74869 RepID=A0A182SMM1_9DIPT)

HSP 1 Score: 61.2 bits (147), Expect = 5.640e-10
Identity = 25/34 (73.53%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV 102
            PYI+FGPPGTGKTCT++E++LQ+ KLRP+ RILV
Sbjct:  333 PYILFGPPGTGKTCTIVEAVLQIWKLRPKSRILV 366
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: A0A182PP12_9DIPT (RNA helicase n=1 Tax=Anopheles epiroticus TaxID=199890 RepID=A0A182PP12_9DIPT)

HSP 1 Score: 60.8 bits (146), Expect = 7.680e-10
Identity = 24/34 (70.59%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV 102
            PY++FGPPGTGKTCT++E++LQ+ KLRP+ RILV
Sbjct:  366 PYVLFGPPGTGKTCTIVETVLQIWKLRPKSRILV 399
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: A0A1S4H8X7_ANOGA (RNA helicase n=11 Tax=gambiae species complex TaxID=44542 RepID=A0A1S4H8X7_ANOGA)

HSP 1 Score: 60.5 bits (145), Expect = 1.050e-9
Identity = 24/34 (70.59%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV 102
            PYI+FGPPGTGKTCT++E++LQ+ K+RP+ RILV
Sbjct:  393 PYILFGPPGTGKTCTIVEAVLQIWKMRPKSRILV 426
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: Q7PVA7_ANOGA (RNA helicase (Fragment) n=1 Tax=Anopheles gambiae TaxID=7165 RepID=Q7PVA7_ANOGA)

HSP 1 Score: 60.5 bits (145), Expect = 1.050e-9
Identity = 24/34 (70.59%), Postives = 32/34 (94.12%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV 102
            PYI+FGPPGTGKTCT++E++LQ+ K+RP+ RILV
Sbjct:  228 PYILFGPPGTGKTCTIVEAVLQIWKMRPKSRILV 261
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: A0A182JH76_9DIPT (RNA helicase n=1 Tax=Anopheles atroparvus TaxID=41427 RepID=A0A182JH76_9DIPT)

HSP 1 Score: 60.1 bits (144), Expect = 1.440e-9
Identity = 24/34 (70.59%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV 102
            PYI+FGPPGTGKTCT++E++LQ+ KL+P  RILV
Sbjct:  177 PYILFGPPGTGKTCTIVEAVLQIYKLQPHSRILV 210
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BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Match: A0A084WIN5_ANOSI (RNA helicase n=1 Tax=Anopheles sinensis TaxID=74873 RepID=A0A084WIN5_ANOSI)

HSP 1 Score: 59.7 bits (143), Expect = 1.960e-9
Identity = 23/34 (67.65%), Postives = 31/34 (91.18%), Query Frame = 1 
Query:    1 PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV 102
            PY++FGPPGTGKTCT++E++LQ+ KL+P  RILV
Sbjct:  355 PYVLFGPPGTGKTCTIVEAVLQIYKLQPNSRILV 388
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18562.5808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KSW5_9PHAE7.040e-1596.97RNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FRN2_ECTSI8.880e-14100.00RNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A182M8L7_9DIPT1.180e-1073.53RNA helicase n=1 Tax=Anopheles culicifacies TaxID=... [more]
A0A182K9G5_9DIPT5.620e-1073.53RNA helicase n=1 Tax=Anopheles christyi TaxID=4304... [more]
A0A182SMM1_9DIPT5.640e-1073.53Uncharacterized protein n=1 Tax=Anopheles maculatu... [more]
A0A182PP12_9DIPT7.680e-1070.59RNA helicase n=1 Tax=Anopheles epiroticus TaxID=19... [more]
A0A1S4H8X7_ANOGA1.050e-970.59RNA helicase n=11 Tax=gambiae species complex TaxI... [more]
Q7PVA7_ANOGA1.050e-970.59RNA helicase (Fragment) n=1 Tax=Anopheles gambiae ... [more]
A0A182JH76_9DIPT1.440e-970.59RNA helicase n=1 Tax=Anopheles atroparvus TaxID=41... [more]
A0A084WIN5_ANOSI1.960e-967.65RNA helicase n=1 Tax=Anopheles sinensis TaxID=7487... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18562contigEcto-sp13_S_contig18562:2979..3080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score72.4
Seed ortholog evalue4.6e-11
Seed eggNOG ortholog2880.D7FRN2
Model size102
KEGG rclassRC00379,RC00444,RC00445
KEGG koko:K01756,ko:K13983,ko:K18422
KEGG ReactionR01083,R04559
KEGG Pathwayko00230,ko00250,ko01100,ko01110,ko01130,map00230,map00250,map01100,map01110,map01130
KEGG ModuleM00048,M00049
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.helicase activity
EggNOG OGsCOG1112@1,KOG1804@2759
EC3.6.4.13,4.3.2.2
Cds size102
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.8935726-CDS-Ecto-sp13_S_contig18562:2978..30801681462952.8935726-CDS-Ecto-sp13_S_contig18562:2978..3080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18562 2979..3080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18562.5808.1prot_Ecto-sp13_S_contig18562.5808.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18562 2979..3080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18562.5808.1

>prot_Ecto-sp13_S_contig18562.5808.1 ID=prot_Ecto-sp13_S_contig18562.5808.1|Name=mRNA_Ecto-sp13_S_contig18562.5808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=34bp
PYIIFGPPGTGKTCTVIESILQLVKLRPECRILV
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mRNA from alignment at Ecto-sp13_S_contig18562:2979..3080+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18562.5808.1 ID=mRNA_Ecto-sp13_S_contig18562.5808.1|Name=mRNA_Ecto-sp13_S_contig18562.5808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18562:2979..3080+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTACATCATTTTTGGTCCTCCTGGCACCGGCAAGACGTGCACCGTTAT
CGAGTCTATCCTCCAACTCGTCAAGCTCAGACCGGAGTGCCGGATTCTGG
TG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18562:2979..3080+

>mRNA_Ecto-sp13_S_contig18562.5808.1 ID=mRNA_Ecto-sp13_S_contig18562.5808.1|Name=mRNA_Ecto-sp13_S_contig18562.5808.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=102bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18562:2979..3080+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCTTACATCATTTTTGGTCCTCCTGGCACCGGCAAGACGTGCACCGTTAT
CGAGTCTATCCTCCAACTCGTCAAGCTCAGACCGGAGTGCCGGATTCTGG
TG
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