mRNA_Ecto-sp13_S_contig18561.5807.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18561.5807.1
Unique NamemRNA_Ecto-sp13_S_contig18561.5807.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18561.5807.1 vs. uniprot
Match: A0A6H5JVU6_9PHAE (ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JVU6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 4.850e-52
Identity = 89/96 (92.71%), Postives = 93/96 (96.88%), Query Frame = 1 
Query:   58 MFRSRMDHGGWTSEDWRTKQAKHRAYSASRKSAVASVLHRRAMASNASAHGLPAPFELRGVVRRTVTGGPSGTTGHHALPLRHGSMPLPSNVACGN 345
            MFRSRM+HGGWTSEDWRTKQAKHRAY+ASRKSAVASVLHRRAMASNASAHGLPAPFELRGVVRRT+TGG  GTTGHHALPL HG+MPLPSNVACGN
Sbjct:    1 MFRSRMEHGGWTSEDWRTKQAKHRAYNASRKSAVASVLHRRAMASNASAHGLPAPFELRGVVRRTITGGLGGTTGHHALPLHHGNMPLPSNVACGN 96
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18561.5807.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JVU6_9PHAE4.850e-5292.71ABC protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18561contigEcto-sp13_S_contig18561:1168..2458 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.4
Seed ortholog evalue3.8e-17
Seed eggNOG ortholog2880.D8LL57
Model size348
KEGG koko:K05657
KEGG TC3.A.1.201
KEGG Pathwayko02010,map02010
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000166,GO:0000323,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003824,GO:0005215,GO:0005216,GO:0005217,GO:0005253,GO:0005254,GO:0005260,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005798,GO:0005829,GO:0005886,GO:0005887,GO:0006464,GO:0006508,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006821,GO:0006833,GO:0006873,GO:0006885,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0008144,GO:0008150,GO:0008152,GO:0008200,GO:0008509,GO:0008514,GO:0009719,GO:0009986,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010359,GO:0010646,GO:0010647,GO:0010817,GO:0012505,GO:0012506,GO:0014070,GO:0014074,GO:0015075,GO:0015103,GO:0015106,GO:0015108,GO:0015267,GO:0015276,GO:0015318,GO:0015399,GO:0015405,GO:0015698,GO:0015701,GO:0015711,GO:0016020,GO:0016021,GO:0016043,GO:0016247,GO:0016248,GO:0016324,GO:0016462,GO:0016579,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017081,GO:0017111,GO:0017157,GO:0019538,GO:0019725,GO:0019869,GO:0019899,GO:0019904,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022803,GO:0022804,GO:0022834,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022898,GO:0023051,GO:0023056,GO:0030003,GO:0030004,GO:0030104,GO:0030135,GO:0030136,GO:0030154,GO:0030165,GO:0030554,GO:0030641,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0031090,GO:0031224,GO:0031226,GO:0031410,GO:0031982,GO:0031984,GO:0032024,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032504,GO:0032553,GO:0032555,GO:0032559,GO:0032879,GO:0032880,GO:0032991,GO:0033993,GO:0034220,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035377,GO:0035381,GO:0035639,GO:0035690,GO:0035774,GO:0036094,GO:0036211,GO:0042044,GO:0042045,GO:0042175,GO:0042221,GO:0042391,GO:0042493,GO:0042592,GO:0042623,GO:0042626,GO:0043167,GO:0043168,GO:0043170,GO:0043225,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043412,GO:0043492,GO:0044070,GO:0044093,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0045177,GO:0045852,GO:0045921,GO:0046677,GO:0046683,GO:0046883,GO:0046887,GO:0048232,GO:0048240,GO:0048468,GO:0048469,GO:0048515,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048869,GO:0048871,GO:0048878,GO:0050708,GO:0050714,GO:0050789,GO:0050794,GO:0050796,GO:0050801,GO:0050878,GO:0050891,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051087,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051453,GO:0051454,GO:0051591,GO:0051704,GO:0051716,GO:0055037,GO:0055067,GO:0055080,GO:0055082,GO:0055085,GO:0060081,GO:0060341,GO:0060627,GO:0061024,GO:0061178,GO:0061478,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070633,GO:0070646,GO:0070647,GO:0070887,GO:0071236,GO:0071310,GO:0071320,GO:0071396,GO:0071407,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071840,GO:0071944,GO:0090087,GO:0090276,GO:0090277,GO:0097159,GO:0097305,GO:0097306,GO:0097367,GO:0097708,GO:0098588,GO:0098590,GO:0098656,GO:0098660,GO:0098661,GO:0098771,GO:0098772,GO:0098805,GO:0098827,GO:0098852,GO:0099095,GO:0099106,GO:0099133,GO:0099142,GO:1901265,GO:1901363,GO:1901529,GO:1901564,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902159,GO:1902161,GO:1902476,GO:1902941,GO:1902943,GO:1903530,GO:1903532,GO:1903793,GO:1903795,GO:1903797,GO:1903959,GO:1903961,GO:1904321,GO:1904322,GO:1904951,GO:2001225
Exons2
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0058@2759
Cds size345
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.8491719-CDS-Ecto-sp13_S_contig18561:1167..12901681462952.8491719-CDS-Ecto-sp13_S_contig18561:1167..1290Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18561 1168..1290 +
1681462952.865839-CDS-Ecto-sp13_S_contig18561:2235..24571681462952.865839-CDS-Ecto-sp13_S_contig18561:2235..2457Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18561 2236..2457 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18561.5807.1prot_Ecto-sp13_S_contig18561.5807.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18561 1168..2457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18561.5807.1

>prot_Ecto-sp13_S_contig18561.5807.1 ID=prot_Ecto-sp13_S_contig18561.5807.1|Name=mRNA_Ecto-sp13_S_contig18561.5807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
SIAPPYDLAPRPLVLLLATMFRSRMDHGGWTSEDWRTKQAKHRAYSASRK
SAVASVLHRRAMASNASAHGLPAPFELRGVVRRTVTGGPSGTTGHHALPL
RHGSMPLPSNVACGN
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mRNA from alignment at Ecto-sp13_S_contig18561:1168..2458+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18561.5807.1 ID=mRNA_Ecto-sp13_S_contig18561.5807.1|Name=mRNA_Ecto-sp13_S_contig18561.5807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1291bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18561:1168..2458+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATCGCCCCACCGTACGACCTCGCACCCCGCCCTTTGGTGCTGCTGCT
AGCCACCATGTTTAGATCCCGCATGGACCATGGGGGTTGGACTTCCGAAG
ATTGGAGAACAAAGCAAGCAAAGGTGATTGATAGCGTGGTCAGTTGAATT
TTGGGGGCAACGCTTCCTCTCGGTTCAGCAGCCACAAGACAAGCTCGCAC
CCGCACACACGCACACACGCGGCAACGGGACCATGTCTCATAGGCTGTGG
AGAGCAGAATCCCTTCCGCGTACTGCTGTTTTGCAGTTTTTGGGTCAGGC
AGGCCATGGTGTCGCTGCGACAAGGACTGCATGTTGTGTCTGCACCTCTG
CATACCGCAGAGTACACCCCCCCTGCACTCGCCCGTAGTCTAATGCTGTC
AGCCGTCAACTGCGGTACCGCTGTAGCTGACCTGCTGTACGTGGGTCGGC
CAAGGAAATGAAGGACGCTCGAGTGCCAACCTTGGGTAGGCGGTGCCGCT
TTCCTTTTTTTGTGCTTCGCAGGTTTGGTGCCACTGAAGCAGTTGCTTGG
CGACCACCCTGCAATTTTCTTTTGACCGCTCGCGCTTGGAACGAATCTCT
TGCAGCAGCATACGTCACGTATGCACCGATGCACACCACATGTTCAAACC
GCGTCAACCGTCAGTATCAGGCATTCCAACACTCCTCTGTCACGAGAGAC
AAGGGGGTTACCCCATTTCACTCCAAGGGCAGCGGTGCTGCTCTATGAAT
ACTGTGTACATGACACGCAGGGAACCATTTGTAGTGATCAAAGAGGAGAT
TCGCCTTGAGGATTGCGCGAAGGATTGTACACCAAGATATTGATGTGATC
ATGTGTTCGAGATGCCACCTTTGAGCAAGCGCCAATCGGTGTGTGGTTTC
TCCGTTGGGTGACATGTAATCCTTTTCTGAGGAGCCGAAAATACCCCAAG
TACCGCCATGACGTAATCTACAAGCGCTACCCAACTCAGCCGGGTCAAGC
GCCTGACCACCGCGTTTTCTCTATTCGCGTCACCCCAAACCGCCCACCAA
AAAATCCAACATTCCCAGCATCGAGCGTACAGCGCTTCACGCAAAAGCGC
GGTGGCATCAGTCCTACACCGGAGGGCAATGGCCTCCAACGCGTCAGCTC
ACGGGCTACCCGCCCCTTTCGAGCTGCGAGGAGTGGTGCGGCGAACCGTC
ACCGGTGGCCCTAGTGGCACCACCGGCCACCATGCCTTGCCGCTTCGCCA
TGGCAGCATGCCCTTACCGTCGAACGTAGCCTGTGGAAACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18561:1168..2458+

>mRNA_Ecto-sp13_S_contig18561.5807.1 ID=mRNA_Ecto-sp13_S_contig18561.5807.1|Name=mRNA_Ecto-sp13_S_contig18561.5807.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18561:1168..2458+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCATCGCCCCACCGTACGACCTCGCACCCCGCCCTTTGGTGCTGCTGCT
AGCCACCATGTTTAGATCCCGCATGGACCATGGGGGTTGGACTTCCGAAG
ATTGGAGAACAAAGCAAGCAAAGCATCGAGCGTACAGCGCTTCACGCAAA
AGCGCGGTGGCATCAGTCCTACACCGGAGGGCAATGGCCTCCAACGCGTC
AGCTCACGGGCTACCCGCCCCTTTCGAGCTGCGAGGAGTGGTGCGGCGAA
CCGTCACCGGTGGCCCTAGTGGCACCACCGGCCACCATGCCTTGCCGCTT
CGCCATGGCAGCATGCCCTTACCGTCGAACGTAGCCTGTGGAAAC
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