mRNA_Ecto-sp13_S_contig18560.5806.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18560.5806.1
Unique NamemRNA_Ecto-sp13_S_contig18560.5806.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Match: A0A6H5KEJ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEJ8_9PHAE)

HSP 1 Score: 157 bits (398), Expect = 8.800e-40
Identity = 75/75 (100.00%), Postives = 75/75 (100.00%), Query Frame = 1 
Query:    1 GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPAS 225
            GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPAS
Sbjct:  180 GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPAS 254
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BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Match: A0A7S3EUW8_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EUW8_9EUKA)

HSP 1 Score: 65.9 bits (159), Expect = 4.980e-9
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 1 
Query:    1 GSPCILPTTAPVSFLDLGDLAELLQDGG----------HADLVTLETWSRDAGAYYCNEMFYRTLHAIRELG--------TPSVDGSSLIPASF 228
            G+ C+L TTAP+  ++L  L   L+DGG           A  + LE WSRDAG YYCNE+++RTL+ IR  G        + +  G+SL+PA F
Sbjct:   40 GAACLLGTTAPLDRINL-PLPAHLRDGGLAIQTLSLQQEAPRLPLELWSRDAGTYYCNEVYFRTLNVIRRAGLRPHYHPLSLASHGASLLPALF 132
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BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Match: A0A7S2W0K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W0K8_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 2.670e-6
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:    4 SPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPASF 228
            +P +LPTT  + ++ L  L +      H   VT E WSRDAGAYYCNE++YR+L  +R     S D S +IP  F
Sbjct:   18 APHLLPTTVRLDYVTLRRLQQETASE-HLRRVT-ELWSRDAGAYYCNELYYRSLETVRR----SRDSSWVIPVLF 86
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BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Match: A0A7S4BFQ2_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BFQ2_CHRCT)

HSP 1 Score: 60.8 bits (146), Expect = 3.990e-6
Identity = 33/77 (42.86%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:    1 GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDG-SSLIPASF 228
            G+ C++PTTAP+  L L  L    +      L   E WSRDAG+YYCNE+++RTLHA+R     +  G + L+P  F
Sbjct:  351 GAACLVPTTAPMHKLTLPLLRRPHR------LEQEEIWSRDAGSYYCNEVYFRTLHAVRSKQIGAATGRAGLLPVVF 421
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BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Match: A0A7S4VFG5_9DINO (Hypothetical protein n=2 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4VFG5_9DINO)

HSP 1 Score: 60.1 bits (144), Expect = 4.720e-6
Identity = 33/75 (44.00%), Postives = 42/75 (56.00%), Query Frame = 1 
Query:    7 PCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSS-LIPASF 228
            PC+L +TAP++ L+L  L               E WSRDAGAYYCNE++YRTL A+R    P   G   L+P  F
Sbjct:  242 PCLLASTAPLNGLELPLLRRFPSPR--------EIWSRDAGAYYCNEVYYRTLQAVRTRLIPPASGQQDLLPVIF 308
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BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Match: A0A7S2Z4Q2_9CHLO (Hypothetical protein n=1 Tax=Chloropicon laureae TaxID=464258 RepID=A0A7S2Z4Q2_9CHLO)

HSP 1 Score: 55.5 bits (132), Expect = 3.750e-5
Identity = 31/58 (53.45%), Postives = 36/58 (62.07%), Query Frame = 1 
Query:    4 SPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIR 177
            +P ILPTT         DL +L  D   A   T E WSRDAG YYCNE+FYR+LHA+R
Sbjct:   78 APPILPTTV--------DLGKLALDPTQA---TGEIWSRDAGHYYCNEIFYRSLHAVR 124
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BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Match: A0A7S2VZR4_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2VZR4_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 3.940e-5
Identity = 33/75 (44.00%), Postives = 44/75 (58.67%), Query Frame = 1 
Query:    4 SPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIRELGTPSVDGSSLIPASF 228
            +P +LPTT  + ++ L  L +      H   VT E WSRDAGAYYCNE++YR+L  +R     S D S +IP  F
Sbjct:  208 APHLLPTTVRLDYVTLRRLQQETASE-HLRRVT-ELWSRDAGAYYCNELYYRSLETVRR----SRDSSWVIPVLF 276
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BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Match: A0A7S3JRC4_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JRC4_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 6.350e-5
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:    7 PCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEMFYRTLHAIR--ELGTPSVDGSSLI 216
            PC+  TTAP+  L L    E           T E WSRDAGA+YCNE+++R+LH +R  +L  PS   S L+
Sbjct:  190 PCLQVTTAPLDRLILPSTNE-----------TNEVWSRDAGAFYCNELYFRSLHTVRSRQLLVPSPSSSCLL 250
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18560.5806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KEJ8_9PHAE8.800e-40100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3EUW8_9EUKA4.980e-941.49Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
A0A7S2W0K8_9STRA2.670e-644.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4BFQ2_CHRCT3.990e-642.86Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4VFG5_9DINO4.720e-644.00Hypothetical protein n=2 Tax=Alexandrium monilatum... [more]
A0A7S2Z4Q2_9CHLO3.750e-553.45Hypothetical protein n=1 Tax=Chloropicon laureae T... [more]
A0A7S2VZR4_9STRA3.940e-544.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3JRC4_9STRA6.350e-543.06Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18560contigEcto-sp13_S_contig18560:77..1839 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1763
Hectar predicted targeting categoryother localisation
Exons1
Cds size300
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.8136084-CDS-Ecto-sp13_S_contig18560:76..3761681462952.8136084-CDS-Ecto-sp13_S_contig18560:76..376Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18560 77..376 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.8226943-UTR-Ecto-sp13_S_contig18560:376..18391681462952.8226943-UTR-Ecto-sp13_S_contig18560:376..1839Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18560 377..1839 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18560.5806.1prot_Ecto-sp13_S_contig18560.5806.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18560 77..376 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18560.5806.1

>prot_Ecto-sp13_S_contig18560.5806.1 ID=prot_Ecto-sp13_S_contig18560.5806.1|Name=mRNA_Ecto-sp13_S_contig18560.5806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=100bp
GSPCILPTTAPVSFLDLGDLAELLQDGGHADLVTLETWSRDAGAYYCNEM
FYRTLHAIRELGTPSVDGSSLIPASFFLAGGGCFGLVKQGQTTASTCLR*
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mRNA from alignment at Ecto-sp13_S_contig18560:77..1839+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18560.5806.1 ID=mRNA_Ecto-sp13_S_contig18560.5806.1|Name=mRNA_Ecto-sp13_S_contig18560.5806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1763bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18560:77..1839+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCCCCCTGTATTCTCCCCACCACGGCACCCGTGTCCTTCCTCGATCT
CGGTGACCTCGCGGAGCTCCTGCAAGACGGCGGGCACGCCGACCTCGTAA
CTCTGGAGACTTGGAGCAGGGACGCCGGGGCGTACTATTGCAACGAGATG
TTCTACCGCACGCTGCACGCCATTCGCGAGCTGGGCACCCCTTCGGTTGA
TGGATCTTCTCTTATCCCGGCGAGTTTCTTCTTGGCGGGTGGGGGTTGTT
TTGGGTTGGTGAAGCAGGGACAGACGACCGCTAGTACGTGCTTGCGGTAG
GTAGTCTTGCGGACATGGGTGTACGTACGTAGACGGGGCGACCTTGCTCG
AGGCTTAGGTTCTCTCGGAGGGCGTACATGCTACAGTAGTTGGTTTTGTT
TCGATAGGTGGTTGTTAGGGCTACAGCAAGAGTTCGTTTTTGACAGCCCT
CGCATGGTTTTACGTTAGGTCTGGATGCGTAGGTCTTGGGCCCCCTGGCT
CCAAACTCACCGCCGCAGTTCTTCTTCCGCGATACACCGGTCGCGCATTG
GTGCGCCCTTCTCGGAGCCCTTGCGCGCACTCCGCACGCCGCAAAGACTC
CCCGTCCACCTCTGAGCACGCCAGCGCAGGCCGATCTTGTACGGCGGTGT
ATCCGGCCCTGATGGATGTTTGTAGACTACCGTTCGTTTGACGAGAGAGA
AGAAGTATCTATGATATACCGGTGATGCAACCTGATGAGCCAATCCATAA
ACGAGAGTCTTTACAGAAACGTTCCCACTCCGGAGTTTCCTCGGCCTCGG
GTCAAAACGCATGAATGTTTTCGATAGGCCCAACGCCCGCTCACGCGTTC
CTCTCCAATGGAACTCCCCCCCGCTCCCCCCCCGCAGGCGATGTTCGTTC
ATCTACCGGACGTAGCGGTGATGGGTCTAGACGACATGACCGTCATGGTG
AGGTTCGTGGCCCAGAGGATCATGCTCGGCACGGTGGGGCTTCTGCCCAA
CGCTTGCAGCCACCGATAGCGGTGGGCCCAGGGGGGGGGGAGGGGGGCAC
CAGGAGGGAGTGGCACGGCGGTCGTGCGCAGCACCCTTCTTTCAGTGATG
CGTGGTTGTTAAGTGCACAGGCATCGCAGTGGTGGTGCTGTAGCTATGCA
GTGTGTTTGGGTAATTCTTTGCGACAGCGAGGAGAGACGGTGAATCGCAG
GAACCTTTTCCTTTGATTCCTTTGATTCGGGGTCGTCTGACCTTCCATGG
ATGTAGAATGGTTCGGTCGGTTGGTGCAACAGTCCTGCTTTTCCGCAACC
CCGGAAAATTCGGTCGGGTCCGGTCGCGACTACCGGGGGCAGAAACTTCG
CAGCGGAGAGCTGGAGTTGGCACACACTCCACGGTGCGATCGTTTTTTTC
ATCGTTTCGCTTTTTCTTTTGTCATTTCCCCACACCCTTGCGGGGTCAGG
AATCGTTTTGAATCACATTTTGGTTTCTTGTGCTAGGGTGCGACTGGCAT
CAACCGACCACGTGTGGTACGGGGTGTCCAATCACTGCGTAGGTTTTCGT
TGCTCCTGCTGTTCTGTGCCCCGACTCCACATGCATCGGGAAGAATACTG
TCTCCGTTTAGTACTTTCTGCAGCGGGGGGTTGAAATCCACGGCGCTTTG
CTAGGCAATAGCAGTGCCTCCCTCCGTGTTACAAGGTGAAGTGAAACGAA
GAACACAAGACCCGGAGAAAATTCCGCATGTGCGGGAGGGAGGAAACTGC
GGTCACGTCGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18560:77..1839+

>mRNA_Ecto-sp13_S_contig18560.5806.1 ID=mRNA_Ecto-sp13_S_contig18560.5806.1|Name=mRNA_Ecto-sp13_S_contig18560.5806.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=300bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18560:77..1839+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCTCCCCCTGTATTCTCCCCACCACGGCACCCGTGTCCTTCCTCGATCT
CGGTGACCTCGCGGAGCTCCTGCAAGACGGCGGGCACGCCGACCTCGTAA
CTCTGGAGACTTGGAGCAGGGACGCCGGGGCGTACTATTGCAACGAGATG
TTCTACCGCACGCTGCACGCCATTCGCGAGCTGGGCACCCCTTCGGTTGA
TGGATCTTCTCTTATCCCGGCGAGTTTCTTCTTGGCGGGTGGGGGTTGTT
TTGGGTTGGTGAAGCAGGGACAGACGACCGCTAGTACGTGCTTGCGGTAG
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