mRNA_Ecto-sp13_S_contig1856.5805.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1856.5805.1
Unique NamemRNA_Ecto-sp13_S_contig1856.5805.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: D7FPU7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPU7_ECTSI)

HSP 1 Score: 527 bits (1358), Expect = 5.520e-189
Identity = 266/272 (97.79%), Postives = 271/272 (99.63%), Query Frame = 1
Query:    1 MKSAVMAAACVSSASAFVAPSLVSSRVASSAPKTTMMAEIPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAKIAPVTENKEQVFVDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 816
            MKSAVMAAACVSSASAFVAPSLVSSRVASSAPKTTMMAE+PGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTD+LAGAAKIAPVTENK+QVF DTV+PGDLGFDPLGLAANG+NPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS
Sbjct:    1 MKSAVMAAACVSSASAFVAPSLVSSRVASSAPKTTMMAEVPGSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDYLAGAAKIAPVTENKDQVFEDTVIPGDLGFDPLGLAANGINPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 272          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: A0A835Z6C4_9STRA (Light harvesting complex protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6C4_9STRA)

HSP 1 Score: 261 bits (667), Expect = 1.550e-83
Identity = 134/237 (56.54%), Postives = 163/237 (68.78%), Query Frame = 1
Query:  124 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAKIAP-VTENKEQVFVDTVVPG-----DLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 816
            G+W+   D T S +LPW  KP+IGDGDM+GD GFDPL+L+    D+ WLR AELKHGR+CMLA VG+V PELVQHPVGF GF F  EFTQMNA AAL +VP+ GLAQIV+ C LIE+A+F  N    + YED L+ LE       +  FL G AK    + +    + V    PG     DLGFDPLGLAANGV  DYALAE+KHARLAMIG LGM + Q  +P+ GVL+Q ++WA+
Sbjct:   58 GAWYVREDPTLSTSLPWVTKPVIGDGDMIGDVGFDPLSLSK-TFDISWLRAAELKHGRVCMLAAVGLVTPELVQHPVGFDGFSFPAEFTQMNAIAALGAVPKFGLAQIVLACGLIEIATFGSNYNSAFNYEDGLSLLERAKLEGNERTFLTGVAKTTSNINKFGNALEVGFEKPGSDNAGDLGFDPLGLAANGVRSDYALAEIKHARLAMIGVLGMLLGQFYEPSKGVLQQTLDWAA 293          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: A0A7S1XTT1_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XTT1_9STRA)

HSP 1 Score: 247 bits (631), Expect = 8.840e-78
Identity = 125/223 (56.05%), Postives = 156/223 (69.96%), Query Frame = 1
Query:  139 PSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAKIAPVTENKEQ----VFVDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLE 795
            P DG  S ALPW+DKP+IGDG + GD GFDP NL++    L WLR AELKHGR+CMLA VG+VAPEL QHP+GF G +FAPEFT+MNAF AL++ P LGLAQI++ C L+E+ +F       + Y+D LTK+E ++   G   FL G AK A   +   +      VD    GD+GFDPLG A NGVNPDYALAELKH R+AM+G LGM +QQ+  P+ G+LE
Sbjct:   62 PVDGM-SAALPWSDKPVIGDGTLAGDQGFDPWNLSS-VFPLTWLRAAELKHGRVCMLAAVGLVAPELFQHPIGFEGLKFAPEFTEMNAFKALNTAPGLGLAQILLFCGLVEIFTFGKAYDGTFTYDDGLTKIEKEDIDAGAFKFLTGGAKNAVAADTASKFDGLTTVDEGRAGDIGFDPLGFADNGVNPDYALAELKHGRVAMLGVLGMLIQQSKTPDFGLLE 282          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: W7TZB5_9STRA (Light-harvesting protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZB5_9STRA)

HSP 1 Score: 243 bits (619), Expect = 3.180e-76
Identity = 126/238 (52.94%), Postives = 160/238 (67.23%), Query Frame = 1
Query:  124 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAK------IAPVTENKEQVFVDT--VVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWA 813
            G W+   D T S ALPW  +P IGDG +VGD GFDP  L+    D+ WLR AELKHGR+ MLA +GMV PELVQ P GF GF+FAPEF+++NA  ALS+VP LGLAQI++  S +EVA+F+    E++ +ED+LT LE K    G+   L+GAAK      + P     +  F D    VPGDLGFDP+G   NG+NPDYALAE+KHARLAM+G  GM +Q+ + P G +L Q + WA
Sbjct:   62 GKWYVRDDPTLSTALPWVTRPEIGDGSLVGDFGFDPFGLSK-IFDVNWLRNAELKHGRLAMLATLGMVTPELVQAPAGFEGFKFAPEFSELNAIKALSAVPTLGLAQIILAISFVEVATFSKVYNERFTFEDNLTPLERKKVVQGRFSDLSGAAKTQAKAGVNPFGNAVDVGFQDPEKFVPGDLGFDPVGFTDNGINPDYALAEIKHARLAMLGAAGMLIQEFLQPKG-ILSQTVEWA 297          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: A0A7R9U4N3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U4N3_9STRA)

HSP 1 Score: 231 bits (590), Expect = 5.940e-72
Identity = 116/228 (50.88%), Postives = 151/228 (66.23%), Query Frame = 1
Query:  124 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAKIAPVTENKEQV----FVDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLE 795
            G W   +    S ALPW+DKP+IGDG++ GD GFDP  L+     L WLR AE+KHGR+CMLA VG++APELVQ+PVG+ G +F P F +MNAF AL +VP LGLAQIV++  L+E+ S   N    + ++D LT +E  +   G   FL G AK A   + K +       + V PGDLGFDPLG A +G+ P++A AE+KHARLAM+G LGM +QQA  P  G+LE
Sbjct:   56 GQWLPKTKEGMSQALPWSDKPVIGDGNLAGDRGFDPWGLSK-IFPLAWLRAAEIKHGRVCMLAAVGLIAPELVQNPVGYEGLQFDPVFQEMNAFKALGTVPGLGLAQIVLVAGLVEIFSIKSNYEGTFTFDDGLTSIERSDIDSGAFKFLTGGAKNALAADTKSKFETLQVTEQVSPGDLGFDPLGFADDGIKPEFAEAEIKHARLAMLGTLGMLIQQAKTPEFGLLE 282          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: A0A0G4G8I9_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4G8I9_VITBC)

HSP 1 Score: 220 bits (560), Expect = 2.540e-67
Identity = 118/241 (48.96%), Postives = 159/241 (65.98%), Query Frame = 1
Query:  124 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDD----LTKLELKNKSL---GKTDFLAGAA--KIAPVTENKEQVFVDTV--VPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWA 813
            G W+   D   S ALPW  +P IGDG++VGD GFDP  L+    ++ WLR AELKHGR+CMLA VG++APELVQ P GF G +F P F++++ + AL+++P  G+AQI+I  +LIE+       T KYLY       L  L L+ ++L   G T FLAG A  ++  + E + +   D V  VPGDLG+DPLGLA NG+  D+ALAE+KHARLAMIG LGM +Q  ++PN  +L+Q + WA
Sbjct:   62 GQWYVRDDPNISPALPWVSRPTIGDGNLVGDFGFDPFGLSK-LVNIQWLRNAELKHGRVCMLASVGLLAPELVQRPEGFKGIDFVPAFSELSPYKALTALPPAGIAQIIIAIALIELT------TAKYLYNPTTKIKLADLTLRERALVQTGNTRFLAGGAFAELGRLGEERIEERPDAVSRVPGDLGWDPLGLADNGIREDWALAEIKHARLAMIGTLGMMLQAFIEPNKPILQQTIEWA 295          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: A0A0G4FH94_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FH94_VITBC)

HSP 1 Score: 203 bits (516), Expect = 5.710e-61
Identity = 117/235 (49.79%), Postives = 151/235 (64.26%), Query Frame = 1
Query:  139 PSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDL----TKLELKNKSL---GKTDFLAGAAKIAPVTENKEQVF----VDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNW 810
            PSD   S+ALPW  KP IGDG +VGD GFDPL L+   AD+ +LR AELKHGR+CMLA VG++APELVQ P GF G EF P F++MN F AL ++P  GL QI+I  +LIE+       T K+L++  +    T +  K + L   G T FLAG+A+    +   E V     + + VPGDLGFDPLGLA  G+  D+ALAE+KH RLAM+  LGM +Q    P+ G+LE   +W
Sbjct:   49 PSD--VSLALPWVAKPQIGDGTLVGDFGFDPLGLSK-IADVGFLRNAELKHGRLCMLAAVGLLAPELVQKPAGFDGLEFVPAFSEMNPFKALFAMPPAGLMQILIAIALIELN------TAKFLWDPSMKMRITDMSEKERLLVQTGNTRFLAGSARPQLASLGNEVVMEKSGMFSRVPGDLGFDPLGLADEGIREDWALAEIKHGRLAMLAVLGMLLQVGARPDKGILEMTGDW 274          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: A0A0G4HNT2_9ALVE (Uncharacterized protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HNT2_9ALVE)

HSP 1 Score: 166 bits (419), Expect = 2.940e-46
Identity = 93/231 (40.26%), Postives = 123/231 (53.25%), Query Frame = 1
Query:  124 GSWWTPSDGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAKIAPVTENKEQVFVDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWAS 816
            G+W+   D   S + PW  K  I DG + GD GFDPL L+    D  W+RTAELKHGRI MLACVG++ PEL+  P GF G  F P F  +    AL   P LG+ QI ++ +LIE        T KY+          KN       ++    K +         + +   PG +GFDP G A NG+  D+A AE+KHARLAM+G  GM +Q  + P+  +LEQ   WA+
Sbjct:   84 GAWYIVQDPEISKSAPWVKKEQIYDGTLAGDYGFDPLRLSER-RDAWWMRTAELKHGRIAMLACVGLLTPELILKPEGFKGLNFVPAFDAVAPLEALRKAPPLGILQIALVLALIEFQ------TLKYV----------KNPMEYLQPYMDKGIKFS-------DEYFEKRTPGSIGFDPAGFADNGIRSDFAEAEIKHARLAMVGAAGMLIQSLIKPDMPILEQTSKWAA 290          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: A0A8J6CE65_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CE65_DIALT)

HSP 1 Score: 132 bits (331), Expect = 8.650e-34
Identity = 92/220 (41.82%), Postives = 112/220 (50.91%), Query Frame = 1
Query:  157 SVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEF--TQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAKIAPVTENKEQVFVDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNW 810
            S ++P+A KP   DG ++GD GFDPL L+N   D+ WLR AE+KHGR+ MLA  G     LVQ      G    PE   T      ALS+ P LGLAQIV L  LIE+ + +  L     YED      LK                AP              PGDLG+DPLGL+A G+N DYA+AELKH RLAM+G  GM     V     + EQ  +W
Sbjct:   48 SASIPFAPKPAKLDGTLLGDIGFDPLGLSN-LWDIKWLRAAEIKHGRVGMLAATGF----LVQEGYRLPGPASNPELFATAKTPLEALSTAPPLGLAQIVALIFLIELVTSSSLLITDSFYEDSPN---LK----------------APAGSGS---------PGDLGWDPLGLSAGGLNLDYAIAELKHGRLAMLGAAGMLAGSLVSGKS-ISEQTYDW 233          
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Match: A0A0G4GWW0_VITBC (Uncharacterized protein n=3 Tax=Sar TaxID=2698737 RepID=A0A0G4GWW0_VITBC)

HSP 1 Score: 127 bits (319), Expect = 4.210e-32
Identity = 82/223 (36.77%), Postives = 110/223 (49.33%), Query Frame = 1
Query:  145 DGTKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRICMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIVILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAKIAPVTENKEQVFVDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLGMAVQQAVDPNGGVLEQFMNWA 813
            D  KSVALP+A KP   +G++VGD GFDP    N   DL  +R  ELKHGR+CMLA +G+    LVQ     S + +   F   N   A  + P LG+ Q++++ S IE   + GN   +                                            +PGD GFDPL L+  G+  ++ L ELKH RLAMIGFLGM VQQ + P+  ++E  +NWA
Sbjct:   46 DIEKSVALPFARKPDNLNGELVGDVGFDPFGFTNNQ-DLARMREVELKHGRVCMLATLGV----LVQ-----STYRWNEAFPSKNFLEAPLTAPTLGMIQLLLVISAIEY--YNGNFVGR--------------------------------------------IPGDRGFDPLRLSREGIRENWQLMELKHGRLAMIGFLGMVVQQLLRPDESIVEMTINWA 212          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1856.5805.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FPU7_ECTSI5.520e-18997.79Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z6C4_9STRA1.550e-8356.54Light harvesting complex protein n=2 Tax=Tribonema... [more]
A0A7S1XTT1_9STRA8.840e-7856.05Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
W7TZB5_9STRA3.180e-7652.94Light-harvesting protein n=2 Tax=Monodopsidaceae T... [more]
A0A7R9U4N3_9STRA5.940e-7250.88Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A0G4G8I9_VITBC2.540e-6748.96Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4FH94_VITBC5.710e-6149.79Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A0G4HNT2_9ALVE2.940e-4640.26Uncharacterized protein n=1 Tax=Chromera velia CCM... [more]
A0A8J6CE65_DIALT8.650e-3441.82Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A0G4GWW0_VITBC4.210e-3236.77Uncharacterized protein n=3 Tax=Sar TaxID=2698737 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1856contigEcto-sp13_S_contig1856:12620..15063 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score118.6
Seed ortholog evalue4.5e-24
Seed eggNOG ortholog2880.D8LKC5
Preferred nameLHCA1
Model size819
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006091,GO:0006950,GO:0008150,GO:0008152,GO:0009266,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009637,GO:0009639,GO:0009642,GO:0009644,GO:0009645,GO:0009765,GO:0009768,GO:0009941,GO:0009987,GO:0010114,GO:0010218,GO:0010287,GO:0015979,GO:0016020,GO:0016168,GO:0019684,GO:0019904,GO:0031409,GO:0031967,GO:0031975,GO:0031976,GO:0031984,GO:0034357,GO:0042651,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0046906,GO:0048037,GO:0050896,GO:0055035,GO:0097159,GO:1901363
Exons2
EggNOG free text desc.photosynthesis, light harvesting
EggNOG OGs28MEX@1,2QTYF@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-18_001730.1
Cds size819
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.7770827-CDS-Ecto-sp13_S_contig1856:12619..127311681462952.7770827-CDS-Ecto-sp13_S_contig1856:12619..12731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1856 12620..12731 +
1681462952.7875645-CDS-Ecto-sp13_S_contig1856:14356..150631681462952.7875645-CDS-Ecto-sp13_S_contig1856:14356..15063Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1856 14357..15063 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1856.5805.1prot_Ecto-sp13_S_contig1856.5805.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1856 12620..15063 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1856.5805.1

>prot_Ecto-sp13_S_contig1856.5805.1 ID=prot_Ecto-sp13_S_contig1856.5805.1|Name=mRNA_Ecto-sp13_S_contig1856.5805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=273bp
MKSAVMAAACVSSASAFVAPSLVSSRVASSAPKTTMMAEIPGSWWTPSDG
TKSVALPWADKPLIGDGDMVGDAGFDPLNLANGPADLVWLRTAELKHGRI
CMLACVGMVAPELVQHPVGFSGFEFAPEFTQMNAFAALSSVPRLGLAQIV
ILCSLIEVASFTGNLTEKYLYEDDLTKLELKNKSLGKTDFLAGAAKIAPV
TENKEQVFVDTVVPGDLGFDPLGLAANGVNPDYALAELKHARLAMIGFLG
MAVQQAVDPNGGVLEQFMNWAS*
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mRNA from alignment at Ecto-sp13_S_contig1856:12620..15063+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1856.5805.1 ID=mRNA_Ecto-sp13_S_contig1856.5805.1|Name=mRNA_Ecto-sp13_S_contig1856.5805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1856:12620..15063+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCGCTGTGATGGCCGCCGCATGTGTATCCTCAGCGTCTGCCTT TGTGGCACCGTCGCTCGTGTCGTCGCGCGTGGCGTCTTCTGCGCCTAAGA CCACCATGATGGGTGAGTTTCGTCATCTCTACAACCGATCGTGGCTCGAA GCCCGCAAGCCTCCCAGTTTGCATGCACCTGTTTCGCGGTTGACTTTGGG TGCTGGTGCTGACATGATTATCACGGCCCCCTCCTATGTATTATCTCCTC TGTTCTGCTTCCTCTCGTTTCCAAGGGGTGTCTCTGAATGTTAAGATGGT GTTGCATGTAAGGTATTTCCTATCCTTGTTGTTGTTGACGATGGGCTGCT TGAAGGGGTGCTGACTCAAGGTACGGCTGTAGGCACTGGCGTTGACGCTG ACTTGAGGATAACAGTAGGCGGCCTTAGTAGAGTCGTGTTTCAAAGTGAC AAGCTGCGTCGAATCCATGAGTACCTCCCATCTTTTGTTTCCTATCTGGA AACTCTGCTTGTGAGTTGCGAGTCCCAAAGAACACACGAAGACAACGTCA CGAGAAAGTTGTACTTCACCTCGTAAAATCAACGCATTTCTAAATCGACG AATCAACGTCATATTGAATGGGATGGGATCACATGGCTCATGTAAAATTC AAGCCACGCGAAGAAGACACGGAAATAGAGTTGTAGAGGAGAAAGCCCTG CTGCACGCACGTATGTGACTATGTTTGAGATATGTTCTCTTTGCAAGCTT GATCGTTCAATGCTGTTCTTGCGATGTGTGCACACGGCAGTCATTGTTGC TCTCCCTTCACCGACAAGGAATGTTGGATGTTTTTCCACACAAGTGGTAA TTGGTAATAACTAAGTGTAGTTGGCGACATGCAGCGAAGGGTCGTGGCGG GGACCGGGGGCCGGGGGGGCGGCAAGAGCTATCTCGCACAGGAGATGATC AAGCTCGGCACCCAATTTGGTGACATCGTTACCCCTGCGACATTAGTTGG GTGTTGTATCTAACAGCAATTATATATCCTGACGAAGAGGAGAGCAAAGC ACGCATTCTAATGCTTTTTCTCGAACATGAGTAATCGAATTTGTTCTTTA CTACCTTAAGTGTCTGTCATGTCCGCATGGGGTACCAAACGGTCGGAGAC CCCATGCATGGGTCATACATGGTCCTTGAGGTGGCGCGGAAAGTATCCCG CCTCACGGGTGGCGAGGAATGATCTTAGTAAATCTACACTTGCTGGGCCC ACACAAGCAACAGCAGACCTCATGATGATGTTGTTGAAAAAACGCGCACT CATGCAACTCCTTGTTGCTGCTGTCTTGGGTTTTCGGCGAATACCCGTTG CTCGCCGCTACACGCATTCCGTCGGTTGAAACATTTCGAGCTCTTATTTG TTGTTGCAGTGAGTTCCCAATTCCTTGGCCCCTTGGCCTTCCATTGCCCC TCGACGACGGGTCGAACGGACGCCATGCCCTCCAAAATGTATGCTTGAGG GAGAACTCCAGCAGTTGTTGGTGTGCAACAGAACGTTAGCTACCCTTGAG TCGAGACTAAAGTATTGCTCTGTCTCGAAATGGACGCGTGGCCAACAGCA GTCCAGTGAAAACACCCTCTGCACGTCCAGAACTCGTACATGGGACACAT GGACACCCTGCAAGCCATTTTGAAATCATGCAGCCCACTCATGCTACCCC CGCCACCTTTCTCCTCCTTTCCACTTGTCCGTTGCAGCCGAGATACCAGG ATCGTGGTGGACTCCGTCCGACGGAACCAAGTCCGTGGCCCTCCCGTGGG CGGACAAGCCGCTCATCGGCGACGGAGACATGGTGGGCGACGCTGGCTTT GACCCGCTCAACTTGGCGAACGGACCCGCGGACCTCGTCTGGCTCCGGAC AGCAGAGCTCAAGCACGGCCGCATCTGCATGCTGGCGTGCGTGGGCATGG TTGCCCCCGAGCTTGTCCAGCACCCCGTGGGCTTCTCCGGGTTCGAGTTC GCGCCCGAGTTCACGCAGATGAACGCGTTCGCCGCGCTGTCCTCCGTACC CCGGCTGGGCCTCGCGCAGATCGTCATCTTGTGCTCGCTCATCGAGGTGG CCTCCTTCACGGGAAACCTCACCGAGAAGTACTTGTACGAGGACGACTTG ACCAAGCTGGAGCTCAAGAACAAATCGCTCGGCAAGACCGACTTCCTCGC GGGCGCGGCTAAGATCGCCCCCGTGACGGAGAACAAGGAGCAAGTCTTTG TGGACACTGTCGTCCCCGGGGACCTCGGCTTCGACCCCCTCGGCCTCGCG GCCAACGGCGTCAACCCCGACTACGCCCTGGCGGAGCTCAAGCACGCCCG TCTCGCAATGATCGGATTCCTCGGCATGGCTGTGCAGCAGGCCGTAGACC CCAACGGTGGTGTGCTCGAGCAGTTCATGAACTGGGCATCTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1856:12620..15063+

>mRNA_Ecto-sp13_S_contig1856.5805.1 ID=mRNA_Ecto-sp13_S_contig1856.5805.1|Name=mRNA_Ecto-sp13_S_contig1856.5805.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=819bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1856:12620..15063+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGTCCGCTGTGATGGCCGCCGCATGTGTATCCTCAGCGTCTGCCTT
TGTGGCACCGTCGCTCGTGTCGTCGCGCGTGGCGTCTTCTGCGCCTAAGA
CCACCATGATGGCCGAGATACCAGGATCGTGGTGGACTCCGTCCGACGGA
ACCAAGTCCGTGGCCCTCCCGTGGGCGGACAAGCCGCTCATCGGCGACGG
AGACATGGTGGGCGACGCTGGCTTTGACCCGCTCAACTTGGCGAACGGAC
CCGCGGACCTCGTCTGGCTCCGGACAGCAGAGCTCAAGCACGGCCGCATC
TGCATGCTGGCGTGCGTGGGCATGGTTGCCCCCGAGCTTGTCCAGCACCC
CGTGGGCTTCTCCGGGTTCGAGTTCGCGCCCGAGTTCACGCAGATGAACG
CGTTCGCCGCGCTGTCCTCCGTACCCCGGCTGGGCCTCGCGCAGATCGTC
ATCTTGTGCTCGCTCATCGAGGTGGCCTCCTTCACGGGAAACCTCACCGA
GAAGTACTTGTACGAGGACGACTTGACCAAGCTGGAGCTCAAGAACAAAT
CGCTCGGCAAGACCGACTTCCTCGCGGGCGCGGCTAAGATCGCCCCCGTG
ACGGAGAACAAGGAGCAAGTCTTTGTGGACACTGTCGTCCCCGGGGACCT
CGGCTTCGACCCCCTCGGCCTCGCGGCCAACGGCGTCAACCCCGACTACG
CCCTGGCGGAGCTCAAGCACGCCCGTCTCGCAATGATCGGATTCCTCGGC
ATGGCTGTGCAGCAGGCCGTAGACCCCAACGGTGGTGTGCTCGAGCAGTT
CATGAACTGGGCATCTTAA
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