mRNA_Ecto-sp13_S_contig1856.5803.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1856.5803.1
Unique NamemRNA_Ecto-sp13_S_contig1856.5803.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1856.5803.1 vs. uniprot
Match: A0A6H5L1F7_9PHAE (MMR_HSR1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F7_9PHAE)

HSP 1 Score: 746 bits (1925), Expect = 6.880e-271
Identity = 385/406 (94.83%), Postives = 396/406 (97.54%), Query Frame = 1 
Query:    1 MVDSTLGVRVALIGRNSACKSLFLKAASSSDKLLADTASDAEVWWTSPLAPREADLAHTPEHGFAPSGERLLPAQLNHASAASVLGEESKQSNGDRCEQAVADAARQGAGEATPAVLMVVGAEMAFHKGYPRPNRGGVTPVKAAVSRVRERLGGGQVPLAVAVSFDVEWDGGPSQSTAMKAFLESMNDEMALEGVPIVAVSPRTELWLREQESEGGRVSYRRGDSQFRIRPAFESLMDKKEITNARAAFDVCGGTGILAAVSTAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRAEPLPIDLDAPIGNGAWLVRLAGSRKAAKMWNAGPAAATGGKGGKPLASVQFGDLRSKDRRRGKS 1218
            MVDSTLGVRVALIGRNS CKSLFLKAASSSDKLL DTASDAEVWWTSPLAPREADLAH PEHGFAPSGERLLPAQLNHAS ASVLGEESK+S+GDRCEQAVADAARQGA EATPAVLMVVGAE++FHKGYPRPNRGGVTPVKAAVSRVRERLGGGQVPLAVAVSFDVEWDGGPSQS+AMKAFL+S+ DEMALEGVP+VA+SPRTELWLREQESEGGRVSYRRGDSQFRI PAF+SLMDKKEITNARAAFDVCGGTGILAA STAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRA PLP+DLDAPIGNGAWLVRLAGSRKAAKMWNA PAAATGGKGGKPLASVQFGDLRSKDRRRGKS
Sbjct:    1 MVDSTLGVRVALIGRNSTCKSLFLKAASSSDKLLPDTASDAEVWWTSPLAPREADLAHAPEHGFAPSGERLLPAQLNHASVASVLGEESKKSDGDRCEQAVADAARQGADEATPAVLMVVGAEISFHKGYPRPNRGGVTPVKAAVSRVRERLGGGQVPLAVAVSFDVEWDGGPSQSSAMKAFLQSVKDEMALEGVPVVAISPRTELWLREQESEGGRVSYRRGDSQFRIHPAFQSLMDKKEITNARAAFDVCGGTGILAAASTAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRAGPLPLDLDAPIGNGAWLVRLAGSRKAAKMWNAAPAAATGGKGGKPLASVQFGDLRSKDRRRGKS 406
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BLAST of mRNA_Ecto-sp13_S_contig1856.5803.1 vs. uniprot
Match: A0A836CLS2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLS2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.440e-25
Identity = 91/227 (40.09%), Postives = 118/227 (51.98%), Query Frame = 1 
Query:  589 IVAVSPRTELWLREQESEGGRVSYRRGDSQF---RIRPAFESLMDKKEITNARAAFDVCGGTGILAAVSTAIGL-DPP-TLVFPVGDFLTLQSSGWCGDGAPVATLRTCRLMRRNSSARDLFAVEKK--EGILAGELVGAEA-SLAPTNSAGRAEPLP-------------IDLDAPIGNGAWLVRLAGSRKAAKMWNAGPAAATGGKGGKPLASVQFGDLRSKDRR 1206
            + AVSP  E WL EQ+ EGGR+S+RRG   F    I+PAF S++   E   A AA   CGG+GI AA+  A+GL  PP TLV PVGD  TLQS GW G GAP A LR C  +   ++A  L  + K      L+GELV A A S++ + +A                    +  +  IG G  +V +  +R+   MW               L SVQFGDLRSK+R+
Sbjct:   82 VFAVSPWLERWLAEQQ-EGGRLSHRRGSDSFVASAIKPAFASVIPAAEAWRAAAACRACGGSGIPAAIVAAVGLCSPPLTLVLPVGDLATLQSLGWEGVGAPRAALRDCLQVWPGTTAAQLCEILKSPPHERLSGELVQATALSVSWSRAAAXXXXXXXXXXXXXXXVVRQLRSNEAIGAGCHVVAIETTRRPVPMWQGEXXXXXXXXXXAKLPSVQFGDLRSKNRK 307
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BLAST of mRNA_Ecto-sp13_S_contig1856.5803.1 vs. uniprot
Match: A0A7S3R6V4_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3R6V4_DUNTE)

HSP 1 Score: 59.7 bits (143), Expect = 7.200e-6
Identity = 54/170 (31.76%), Postives = 77/170 (45.29%), Query Frame = 1 
Query:  571 ALEGVPIVAVSPRTELWLREQESEGGRVSYRRGDSQFRIRPAFESLMDKKEITNA-RAAFDVCGGTGILAAVSTAIGLDPPTLVFPVGDF--------LTLQSSGWC---GDGAPV------ATLRTCRLMRRNSSARDLFAVEKKEG--ILAGELVGAEASLAPTNSAG 1020
            AL   P VA+S  +E WL     +G +V Y+       + P  +     +++    R      GGTG L AVSTA+ + PP +VFPVGD          T+ + G     G+ A          LR   LM+  S+  DLF+V  +    +L GE V AEA +    S+G
Sbjct:  881 ALPQEPAVAMSAASERWLATTARKG-QVVYQDAAPSASVAPGCDDASVARQVAELNRRVLGPFGGTGALLAVSTAVAMRPPAVVFPVGDLNTCTALPARTIATGGGLLLGGEDAKARAAEGPTVLRDAVLMKPGSTPADLFSVLVRPPWQLLEGEFVRAEARVLQCGSSG 1049
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1856.5803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1F7_9PHAE6.880e-27194.83MMR_HSR1_C domain-containing protein n=1 Tax=Ectoc... [more]
A0A836CLS2_9STRA2.440e-2540.09Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S3R6V4_DUNTE7.200e-631.76Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1856contigEcto-sp13_S_contig1856:4321..5952 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.9
Seed ortholog evalue1.9e-07
Seed eggNOG ortholog2903.EOD08279
Model size1221
KEGG koko:K06942
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0005488,GO:0005524,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008144,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0019001,GO:0030554,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032559,GO:0032561,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0044424,GO:0044464,GO:0097159,GO:0097367,GO:1901265,GO:1901363
Exons2
EggNOG free text desc.GTP binding
EggNOG OGsCOG0012@1,KOG1491@2759,KOG2551@1,KOG2551@2759
Ec32 ortholog descriptionUncharacterised GTP-binding protein, C-terminal
Ec32 orthologEc-18_001750.1
Cds size1221
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.6542728-CDS-Ecto-sp13_S_contig1856:4320..48571681462952.6542728-CDS-Ecto-sp13_S_contig1856:4320..4857Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1856 4321..4857 -
1681462952.666662-CDS-Ecto-sp13_S_contig1856:5268..59521681462952.666662-CDS-Ecto-sp13_S_contig1856:5268..5952Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1856 5269..5952 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1856.5803.1prot_Ecto-sp13_S_contig1856.5803.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1856 4321..5952 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1856.5803.1

>prot_Ecto-sp13_S_contig1856.5803.1 ID=prot_Ecto-sp13_S_contig1856.5803.1|Name=mRNA_Ecto-sp13_S_contig1856.5803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=407bp
MVDSTLGVRVALIGRNSACKSLFLKAASSSDKLLADTASDAEVWWTSPLA
PREADLAHTPEHGFAPSGERLLPAQLNHASAASVLGEESKQSNGDRCEQA
VADAARQGAGEATPAVLMVVGAEMAFHKGYPRPNRGGVTPVKAAVSRVRE
RLGGGQVPLAVAVSFDVEWDGGPSQSTAMKAFLESMNDEMALEGVPIVAV
SPRTELWLREQESEGGRVSYRRGDSQFRIRPAFESLMDKKEITNARAAFD
VCGGTGILAAVSTAIGLDPPTLVFPVGDFLTLQSSGWCGDGAPVATLRTC
RLMRRNSSARDLFAVEKKEGILAGELVGAEASLAPTNSAGRAEPLPIDLD
APIGNGAWLVRLAGSRKAAKMWNAGPAAATGGKGGKPLASVQFGDLRSKD
RRRGKS*
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mRNA from alignment at Ecto-sp13_S_contig1856:4321..5952-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1856.5803.1 ID=mRNA_Ecto-sp13_S_contig1856.5803.1|Name=mRNA_Ecto-sp13_S_contig1856.5803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1632bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1856:4321..5952- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACTCTACGCTTGGCGTCCGCGTTGCTCTGATCGGCCGCAATTC
TGCTTGCAAGTCTCTCTTTTTGAAAGCAGCGTCCTCATCCGACAAGCTTC
TCGCGGATACGGCGTCAGATGCGGAAGTATGGTGGACCTCACCGCTCGCG
CCTAGGGAAGCCGATCTCGCCCATACCCCCGAACACGGGTTTGCACCGAG
TGGCGAACGTCTCCTCCCGGCACAGCTGAACCACGCATCGGCGGCTAGCG
TGCTCGGCGAGGAAAGCAAACAAAGCAACGGTGACCGCTGTGAGCAAGCT
GTTGCTGACGCAGCTAGGCAGGGTGCCGGCGAGGCGACACCGGCGGTGCT
GATGGTTGTTGGTGCCGAGATGGCGTTTCATAAAGGGTACCCACGGCCGA
ACCGCGGAGGGGTGACGCCCGTCAAGGCTGCGGTGTCGCGCGTTCGGGAG
CGCCTCGGAGGTGGCCAGGTACCGTTGGCGGTGGCCGTGAGCTTCGATGT
TGAGTGGGACGGCGGTCCGTCGCAATCGACGGCAATGAAGGCCTTTCTTG
AGTCGATGAACGACGAGATGGCCCTCGAGGGCGTGCCGATTGTGGCAGTA
AGCCCCCGAACAGAGCTTTGGCTGCGTGAACAGGAGAGCGAGGGCGGCAG
AGTATCTTATCGGCGCGGAGATTCTCAATTTCGGGTGGGTTTTTGCATCG
TGAATCGGCCTTTTTTGTCGTCTCTCTCTGTTTCTCTCTCGTGTCCTTGG
GAGGCACACTTGCGCTTCGTTTCCTCTCGCTGTGTGATTTCCGTGTGCAG
GAGGTGCCACATTTTATTTCACTATGGAAGAAGCACATGCTGAACATTCG
TTTTCGTGGTTGCAAATGAGCCTCAGCTCTGTCATTCACAGGACTGCTGT
TGTTGTAGCCGTTCAGGGCCCCAAGGCATCGTCGCAACATGGGGCACGGA
GACGTTGCTCTTTCGCCCCAACTGAATGCCTAACCGAAGCCCCACAACCG
CAGGAATGTCGCTCAAGAAAAAATCGATGCAAGGACCCTAATTGCCACTT
GTACCGAACTAAATGATACATTCGAACGTGACTTCTTCGGTGCAGATACG
CCCTGCCTTTGAATCACTCATGGACAAGAAGGAGATCACAAACGCACGCG
CAGCATTCGACGTTTGCGGAGGAACCGGAATTTTGGCAGCAGTGTCAACG
GCCATAGGCCTCGACCCTCCGACGCTAGTGTTTCCTGTAGGAGACTTCCT
CACGCTGCAGAGCTCAGGATGGTGCGGAGACGGCGCTCCTGTTGCAACGT
TACGAACCTGCCGCTTGATGAGAAGGAACTCAAGCGCCCGAGATTTGTTC
GCGGTGGAAAAAAAGGAAGGAATTCTAGCAGGGGAGCTGGTTGGCGCGGA
AGCGTCCTTGGCACCTACGAACTCAGCAGGACGAGCGGAGCCGTTGCCAA
TCGATCTCGACGCGCCGATCGGCAACGGCGCATGGCTCGTGCGGCTCGCT
GGAAGCCGAAAGGCGGCGAAAATGTGGAACGCCGGTCCAGCTGCGGCCAC
TGGCGGGAAAGGCGGCAAGCCTCTGGCTAGTGTTCAGTTTGGTGATCTTC
GAAGTAAGGATCGGCGACGTGGAAAGTCCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1856:4321..5952-

>mRNA_Ecto-sp13_S_contig1856.5803.1 ID=mRNA_Ecto-sp13_S_contig1856.5803.1|Name=mRNA_Ecto-sp13_S_contig1856.5803.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1221bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1856:4321..5952- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGGACTCTACGCTTGGCGTCCGCGTTGCTCTGATCGGCCGCAATTC
TGCTTGCAAGTCTCTCTTTTTGAAAGCAGCGTCCTCATCCGACAAGCTTC
TCGCGGATACGGCGTCAGATGCGGAAGTATGGTGGACCTCACCGCTCGCG
CCTAGGGAAGCCGATCTCGCCCATACCCCCGAACACGGGTTTGCACCGAG
TGGCGAACGTCTCCTCCCGGCACAGCTGAACCACGCATCGGCGGCTAGCG
TGCTCGGCGAGGAAAGCAAACAAAGCAACGGTGACCGCTGTGAGCAAGCT
GTTGCTGACGCAGCTAGGCAGGGTGCCGGCGAGGCGACACCGGCGGTGCT
GATGGTTGTTGGTGCCGAGATGGCGTTTCATAAAGGGTACCCACGGCCGA
ACCGCGGAGGGGTGACGCCCGTCAAGGCTGCGGTGTCGCGCGTTCGGGAG
CGCCTCGGAGGTGGCCAGGTACCGTTGGCGGTGGCCGTGAGCTTCGATGT
TGAGTGGGACGGCGGTCCGTCGCAATCGACGGCAATGAAGGCCTTTCTTG
AGTCGATGAACGACGAGATGGCCCTCGAGGGCGTGCCGATTGTGGCAGTA
AGCCCCCGAACAGAGCTTTGGCTGCGTGAACAGGAGAGCGAGGGCGGCAG
AGTATCTTATCGGCGCGGAGATTCTCAATTTCGGATACGCCCTGCCTTTG
AATCACTCATGGACAAGAAGGAGATCACAAACGCACGCGCAGCATTCGAC
GTTTGCGGAGGAACCGGAATTTTGGCAGCAGTGTCAACGGCCATAGGCCT
CGACCCTCCGACGCTAGTGTTTCCTGTAGGAGACTTCCTCACGCTGCAGA
GCTCAGGATGGTGCGGAGACGGCGCTCCTGTTGCAACGTTACGAACCTGC
CGCTTGATGAGAAGGAACTCAAGCGCCCGAGATTTGTTCGCGGTGGAAAA
AAAGGAAGGAATTCTAGCAGGGGAGCTGGTTGGCGCGGAAGCGTCCTTGG
CACCTACGAACTCAGCAGGACGAGCGGAGCCGTTGCCAATCGATCTCGAC
GCGCCGATCGGCAACGGCGCATGGCTCGTGCGGCTCGCTGGAAGCCGAAA
GGCGGCGAAAATGTGGAACGCCGGTCCAGCTGCGGCCACTGGCGGGAAAG
GCGGCAAGCCTCTGGCTAGTGTTCAGTTTGGTGATCTTCGAAGTAAGGAT
CGGCGACGTGGAAAGTCCTGA
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