mRNA_Ecto-sp13_S_contig18556.5802.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18556.5802.1
Unique NamemRNA_Ecto-sp13_S_contig18556.5802.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18556.5802.1 vs. uniprot
Match: D8LHE7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHE7_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 2.270e-31
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  219 SREVLALIDPELVRHFNGSLALQWDVCERAVGLWGIRCREVLPDTLHEDMCTVPPPWSL 395
            SREVLALIDPELVRHFNGSLALQW+V ER+VGLWG+RCREVL DTLHE+MCTVPPPWSL
Sbjct:  109 SREVLALIDPELVRHFNGSLALQWEVYERSVGLWGVRCREVLRDTLHEEMCTVPPPWSL 167
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18556.5802.1 vs. uniprot
Match: A0A6H5JIX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIX6_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 3.310e-29
Identity = 52/58 (89.66%), Postives = 54/58 (93.10%), Query Frame = -2 
Query:  222 SREVLALIDPELVRHFNGSLALQWDVCERAVGLWGIRCREVLPDTLHEDMCTVPPPWS 395
            SREVLALIDPELVR+FNGSLALQWDV ERAVGLW +RCREVLPD LHEDMCTVP PWS
Sbjct:  113 SREVLALIDPELVRYFNGSLALQWDVYERAVGLWEVRCREVLPDRLHEDMCTVPHPWS 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18556.5802.1 vs. uniprot
Match: A0A6H5JGJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGJ5_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.130e-17
Identity = 39/58 (67.24%), Postives = 47/58 (81.03%), Query Frame = -2 
Query:  222 SREVLALIDPELVRHFNGSLALQWDVCERAVGLWGIRCREVLPDTLHEDMCTVPPPWS 395
            SR+VLA +DP+LVR FNGSLALQW V E+AV LW +RCREVLP   HE++CTV  P+S
Sbjct:  269 SRDVLAALDPQLVREFNGSLALQWRVYEKAVALWDLRCREVLPVAKHEELCTVALPFS 326
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18556.5802.1 vs. uniprot
Match: A0A6H5JGQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGQ3_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 4.970e-17
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = -2 
Query:  222 SREVLALIDPELVRHFNGSLALQWDVCERAVGLWGIRCREVLPDTLHEDMCTVPPPWS 395
            SR VLA IDP LVR FN SLALQW V E+AV LWG RCREVLP T+H+ MCTV PP S
Sbjct:  396 SRYVLAAIDPSLVRQFNDSLALQWKVYEKAVELWGTRCREVLPITVHDAMCTVAPPDS 453
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18556.5802.1 vs. uniprot
Match: A0A6H5JAP0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAP0_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.260e-6
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = -2 
Query:  228 SREVLALIDPELVRHFNGSLALQWDVCERAVGLWGIRCREVLPDTLHEDMCTVPPP 395
            S  VLA +DP+LV+ FN +L+ QW +   AV L+  RC+EVLP+  H + C+V  P
Sbjct:  292 SSNVLASLDPQLVKQFNSTLSYQWLMYGHAVRLFRARCQEVLPEYQHWEFCSVQQP 347
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18556.5802.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LHE7_ECTSI2.270e-3189.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JIX6_9PHAE3.310e-2989.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGJ5_9PHAE3.130e-1767.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGQ3_9PHAE4.970e-1772.41Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAP0_9PHAE2.260e-646.43Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18556contigEcto-sp13_S_contig18556:1332..1727 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size397
Hectar predicted targeting categoryother localisation
Exons1
Cds size396
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.6227539-CDS-Ecto-sp13_S_contig18556:1331..17271681462952.6227539-CDS-Ecto-sp13_S_contig18556:1331..1727Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18556 1332..1727 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18556.5802.1prot_Ecto-sp13_S_contig18556.5802.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18556 1332..1727 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18556.5802.1

>prot_Ecto-sp13_S_contig18556.5802.1 ID=prot_Ecto-sp13_S_contig18556.5802.1|Name=mRNA_Ecto-sp13_S_contig18556.5802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=132bp
PLILFSALKLRNCGGAEKCRLSNGLVASFPKAYHRFMYASSSSQSDRRAF
DKTTQGTGVTSSATYGAERPPLYNDQGGGTVHISSCSVSGSTSRQRIPQS
PTALSHTSHCNARDPLKCRTSSGSIKAKTSRE
back to top

mRNA from alignment at Ecto-sp13_S_contig18556:1332..1727+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18556.5802.1 ID=mRNA_Ecto-sp13_S_contig18556.5802.1|Name=mRNA_Ecto-sp13_S_contig18556.5802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18556:1332..1727+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCTTATCCTTTTCTCAGCGCTCAAATTAAGAAATTGTGGCGGTGCCGA
AAAATGTCGGCTTTCGAACGGTCTCGTCGCGAGCTTTCCGAAAGCATATC
ATCGCTTCATGTATGCATCCTCGTCGTCTCAAAGCGACCGAAGAGCCTTT
GACAAAACGACCCAGGGCACGGGGGTGACATCTTCTGCCACTTACGGCGC
AGAGCGTCCACCGCTCTATAACGACCAGGGGGGGGGCACCGTACACATAT
CCTCGTGCAGCGTATCCGGCAGCACTTCGCGGCAGCGGATCCCCCAGAGT
CCAACGGCTCTCTCACACACGTCCCACTGCAACGCGAGAGATCCATTGAA
GTGCCGCACGAGCTCCGGGTCTATCAAAGCCAAAACCTCTCGAGAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18556:1332..1727+

>mRNA_Ecto-sp13_S_contig18556.5802.1 ID=mRNA_Ecto-sp13_S_contig18556.5802.1|Name=mRNA_Ecto-sp13_S_contig18556.5802.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=396bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18556:1332..1727+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCTTATCCTTTTCTCAGCGCTCAAATTAAGAAATTGTGGCGGTGCCGA
AAAATGTCGGCTTTCGAACGGTCTCGTCGCGAGCTTTCCGAAAGCATATC
ATCGCTTCATGTATGCATCCTCGTCGTCTCAAAGCGACCGAAGAGCCTTT
GACAAAACGACCCAGGGCACGGGGGTGACATCTTCTGCCACTTACGGCGC
AGAGCGTCCACCGCTCTATAACGACCAGGGGGGGGGCACCGTACACATAT
CCTCGTGCAGCGTATCCGGCAGCACTTCGCGGCAGCGGATCCCCCAGAGT
CCAACGGCTCTCTCACACACGTCCCACTGCAACGCGAGAGATCCATTGAA
GTGCCGCACGAGCTCCGGGTCTATCAAAGCCAAAACCTCTCGAGAA
back to top