prot_Ecto-sp13_S_contig18550.5800.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18550.5800.1
Unique Nameprot_Ecto-sp13_S_contig18550.5800.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length377
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18550.5800.1 vs. uniprot
Match: A0A6H5K9F0_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9F0_9PHAE)

HSP 1 Score: 573 bits (1476), Expect = 4.080e-200
Identity = 329/409 (80.44%), Postives = 337/409 (82.40%), Query Frame = 0 
Query:    1 MLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMISKLNFRLAPPSPDEALHCLS------------------------------HYLKRARARTCWFRHAPYTLAVAALATAYNCMGLGRERRQLLRECDARARAVTGRGVDVHGVAACADAMVSDERAAAAATXXXXXA-TSGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAFAAVGVRGDQGTGSGGG---VPLVEDFSPLTTFSPHEAVTTKAVASHVVTGRRVVRRVSSPPRGGGAVTARPRRVSTSPWDIAAPLPPGKA--ESXXXXXXXXXVERVAHRRAPVVAVQAYPDLPKASRRQIVGVGGGGGQKRRLHQSSGSCFVPCARRRRSVEGKDVRRVEVADAGGSVG 373
            MLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMISKLNFRLAPPSPDEALHCLS                              HYLKRARARTCWFRHAPYTLAVAALATAYN +GLG+ERR+LLRECDAR+RAVTGRGVDVHGVAACADAMV DERAAA   XXXXX   SGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAF+AVGVRGDQG GSGGG   VPLVEDFSPLTTFSPH AV TKAVASH+V GRRVVRRVSS PR GGA  ARP  VSTSPWDIAAP P G+A  E          VERVA RRAP+VAVQA PDLP A RRQ VGVGGGGGQKRRLHQSSGSCFVPCARRRRSVEGKDVRRV VADAGG VG
Sbjct:  137 MLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMISKLNFRLAPPSPDEALHCLSSLLLRSSSSSDNKSGRGGVPLHSDVLSASSHYLKRARARTCWFRHAPYTLAVAALATAYNSVGLGKERRRLLRECDARSRAVTGRGVDVHGVAACADAMVRDERAAAXXXXXXXXXXNSGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAFSAVGVRGDQGIGSGGGGSGVPLVEDFSPLTTFSPHGAVKTKAVASHMVAGRRVVRRVSSSPRCGGAAVARPPLVSTSPWDIAAPPPLGRAGPEPRRVYTSPLDVERVAPRRAPIVAVQACPDLPDALRRQSVGVGGGGGQKRRLHQSSGSCFVPCARRRRSVEGKDVRRVGVADAGGHVG 545
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18550.5800.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9F0_9PHAE4.080e-20080.44Cyclin N-terminal domain-containing protein n=2 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.472.10coord: 2..57
e-value: 1.8E-9
score: 39.5
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 14..18
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 19..376
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..13
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..20
score: 0.514
IPR006671Cyclin, N-terminalPFAMPF00134Cyclin_Ncoord: 3..56
e-value: 1.4E-8
score: 34.5
IPR036915Cyclin-like superfamilySUPERFAMILY47954Cyclin-likecoord: 3..56

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18550contigEcto-sp13_S_contig18550:36..1816 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18550.5800.1mRNA_Ecto-sp13_S_contig18550.5800.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18550 3..2031 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18550.5800.1 ID=prot_Ecto-sp13_S_contig18550.5800.1|Name=mRNA_Ecto-sp13_S_contig18550.5800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=377bp
MLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMIS
KLNFRLAPPSPDEALHCLSHYLKRARARTCWFRHAPYTLAVAALATAYNC
MGLGRERRQLLRECDARARAVTGRGVDVHGVAACADAMVSDERAAAAATA
AATAATSGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAFAA
VGVRGDQGTGSGGGVPLVEDFSPLTTFSPHEAVTTKAVASHVVTGRRVVR
RVSSPPRGGGAVTARPRRVSTSPWDIAAPLPPGKAESRRVSTSPLDVERV
AHRRAPVVAVQAYPDLPKASRRQIVGVGGGGGQKRRLHQSSGSCFVPCAR
RRRSVEGKDVRRVEVADAGGSVGANG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006671Cyclin_N
IPR036915Cyclin-like_sf