mRNA_Ecto-sp13_S_contig18550.5800.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18550.5800.1
Unique NamemRNA_Ecto-sp13_S_contig18550.5800.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18550.5800.1 vs. uniprot
Match: A0A6H5K9F0_9PHAE (Cyclin N-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K9F0_9PHAE)

HSP 1 Score: 594 bits (1531), Expect = 4.380e-207
Identity = 340/420 (80.95%), Postives = 348/420 (82.86%), Query Frame = 1 
Query:    1 VSLTVTPVNDHMLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMISKLNFRLAPPSPDEALHCLS------------------------------HYLKRARARTCWFRHAPYTLAVAALATAYNCMGLGRERRQLLRECDARARAVTGRGVDVHGVAACADAMVSDERAAAAATXXXXXA-TSGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAFAAVGVRGDQGTGSGGG---VPLVEDFSPLTTFSPHEAVTTKAVASHVVTGRRVVRRVSSPPRGGGAVTARPRRVSTSPWDIAAPLPPGKA--ESXXXXXXXXXVERVAHRRAPVVAVQAYPDLPKASRRQIVGVGGGGGQKRRLHQSSGSCFVPCARRRRSVEGKDVRRVEVADAGGSVG 1152
            VSLTVTPVNDHMLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMISKLNFRLAPPSPDEALHCLS                              HYLKRARARTCWFRHAPYTLAVAALATAYN +GLG+ERR+LLRECDAR+RAVTGRGVDVHGVAACADAMV DERAAA   XXXXX   SGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAF+AVGVRGDQG GSGGG   VPLVEDFSPLTTFSPH AV TKAVASH+V GRRVVRRVSS PR GGA  ARP  VSTSPWDIAAP P G+A  E          VERVA RRAP+VAVQA PDLP A RRQ VGVGGGGGQKRRLHQSSGSCFVPCARRRRSVEGKDVRRV VADAGG VG
Sbjct:  126 VSLTVTPVNDHMLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMISKLNFRLAPPSPDEALHCLSSLLLRSSSSSDNKSGRGGVPLHSDVLSASSHYLKRARARTCWFRHAPYTLAVAALATAYNSVGLGKERRRLLRECDARSRAVTGRGVDVHGVAACADAMVRDERAAAXXXXXXXXXXNSGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAFSAVGVRGDQGIGSGGGGSGVPLVEDFSPLTTFSPHGAVKTKAVASHMVAGRRVVRRVSSSPRCGGAAVARPPLVSTSPWDIAAPPPLGRAGPEPRRVYTSPLDVERVAPRRAPIVAVQACPDLPDALRRQSVGVGGGGGQKRRLHQSSGSCFVPCARRRRSVEGKDVRRVGVADAGGHVG 545
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18550.5800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K9F0_9PHAE4.380e-20780.95Cyclin N-terminal domain-containing protein n=2 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18550contigEcto-sp13_S_contig18550:3..2031 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score557.8
Seed ortholog evalue4e-156
Seed eggNOG ortholog2880.D8LFC1
Model size1379
KEGG koko:K06627
KEGG Pathwayko04110,ko04152,ko04218,ko04914,ko05161,ko05165,ko05169,ko05203,map04110,map04152,map04218,map04914,map05161,map05165,map05169,map05203
KEGG ModuleM00693
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.cell division
EggNOG OGsCOG5024@1,KOG0654@2759
Ec32 ortholog descriptionCyclin-like
Ec32 orthologEc-07_005740.1
Cds size1131
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.4856894-UTR-Ecto-sp13_S_contig18550:2..351681462952.4856894-UTR-Ecto-sp13_S_contig18550:2..35Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18550 3..35 +
1681462952.5327463-UTR-Ecto-sp13_S_contig18550:1816..20311681462952.5327463-UTR-Ecto-sp13_S_contig18550:1816..2031Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18550 1817..2031 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.5013928-CDS-Ecto-sp13_S_contig18550:35..1551681462952.5013928-CDS-Ecto-sp13_S_contig18550:35..155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18550 36..155 +
1681462952.5126994-CDS-Ecto-sp13_S_contig18550:715..7981681462952.5126994-CDS-Ecto-sp13_S_contig18550:715..798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18550 716..798 +
1681462952.5227823-CDS-Ecto-sp13_S_contig18550:888..18161681462952.5227823-CDS-Ecto-sp13_S_contig18550:888..1816Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18550 889..1816 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18550.5800.1prot_Ecto-sp13_S_contig18550.5800.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18550 36..1816 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18550.5800.1

>prot_Ecto-sp13_S_contig18550.5800.1 ID=prot_Ecto-sp13_S_contig18550.5800.1|Name=mRNA_Ecto-sp13_S_contig18550.5800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=377bp
MLLQLAAYVALLIASKMGETCPLRMRSLANLTGRMFTPLQVKQLEMDMIS
KLNFRLAPPSPDEALHCLSHYLKRARARTCWFRHAPYTLAVAALATAYNC
MGLGRERRQLLRECDARARAVTGRGVDVHGVAACADAMVSDERAAAAATA
AATAATSGHARGSTESPVCGGSNTAAKDGWGSPTGVAQGAELLQKAAFAA
VGVRGDQGTGSGGGVPLVEDFSPLTTFSPHEAVTTKAVASHVVTGRRVVR
RVSSPPRGGGAVTARPRRVSTSPWDIAAPLPPGKAESRRVSTSPLDVERV
AHRRAPVVAVQAYPDLPKASRRQIVGVGGGGGQKRRLHQSSGSCFVPCAR
RRRSVEGKDVRRVEVADAGGSVGANG*
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mRNA from alignment at Ecto-sp13_S_contig18550:3..2031+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18550.5800.1 ID=mRNA_Ecto-sp13_S_contig18550.5800.1|Name=mRNA_Ecto-sp13_S_contig18550.5800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2029bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18550:3..2031+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCCCTCACCGTCACGCCGGTGAACGACCACATGCTGCTACAGCTAGC
CGCGTACGTCGCACTACTGATCGCGTCGAAGATGGGCGAGACGTGCCCCC
TCCGGATGAGAAGCTTGGCGAACCTGACCGGAAGGATGTTCACGCCGCTT
CAGGTACTTGAGTACCTTTTTTGTTTTCTCCACCTTTGTCGATCGAGTTG
CACCGTGGCATTTGAAGCCGTGCCGCAGCACGCTACTTACACAGCAGCAG
TAGCAGCATTGCACACACACCCTTGTCTTTGACGACCCGTAAGCCTGTCG
GGCATGTGTAGATGGAACAGGATCTTTGATGAAGGTTCCCAACGGCGGAA
ATTCTTCGGCCTAGCGAGCTTGCCGTCGTCTATGTCCGGTTATCTTACAT
CCGCGAGAGACGACCGGCCTTCCCGATGGTTGGTTTGGTTTCAAATTCGA
AGCACACGGCCTGGGAACAACCATGGTGGATTTTTGTAGATGCTTTTGTG
TGCCATCGTTTGCAGTGGTCACAGATAACTCTTGTGTGGGGCACGGGGCG
TCAAAGTCAGTACTCTTGTCACGTCCAACTTGCCTGTTTCCTCGACAAGC
GCGGCCCCAACGACCCTCTTCCACACCCCCCCCCTTCCTCATCCGGCTCG
TGTCGACCGCGCTACAAGAGTACCCTCTTCTGATGTCCTTGTCTTCCTTC
CCTGTCTCTCCAGGTAAAGCAGCTGGAAATGGACATGATCTCGAAGCTCA
ACTTCCGGCTCGCGCCCCCGAGCCCGGACGAGGCTCTCCACTGCCTGTCC
TCCCTCCTCCACAGCAGCAGCAGTAGCGGCGACAACAACTCCGAGGGGGG
AGGTGTCCCGCTCCACTCCGACGTGCTCTCGGCCAGCTCCCACTATCTCA
AAAGGGCTCGCGCGAGGACCTGCTGGTTCCGCCACGCTCCCTACACCCTC
GCCGTCGCGGCCCTGGCCACCGCCTACAACTGCATGGGACTGGGGAGGGA
GCGGCGGCAGCTGCTCCGCGAGTGTGACGCGCGCGCCCGCGCGGTGACGG
GGAGGGGCGTCGACGTACACGGCGTGGCGGCCTGCGCCGACGCCATGGTG
AGCGACGAGAGGGCGGCAGCGGCTGCGACTGCAGCGGCCACCGCCGCCAC
TAGCGGCCACGCACGTGGGAGCACCGAGTCTCCGGTGTGCGGCGGCAGCA
ACACGGCTGCAAAGGACGGTTGGGGGTCGCCGACCGGAGTCGCTCAAGGG
GCGGAGTTGCTCCAAAAGGCCGCGTTTGCGGCGGTCGGCGTCAGGGGCGA
CCAGGGCACCGGGAGCGGCGGCGGCGTGCCGCTCGTGGAAGACTTCTCGC
CGCTGACGACGTTCAGCCCGCACGAAGCGGTCACGACGAAGGCGGTCGCT
TCGCACGTGGTGACCGGGAGGCGCGTCGTTCGCCGGGTGTCTTCTCCGCC
CCGCGGCGGCGGCGCGGTGACGGCAAGACCGCGTCGGGTCTCAACGTCGC
CGTGGGACATCGCAGCGCCGCTACCTCCGGGTAAGGCGGAGTCGCGACGG
GTATCTACTTCGCCGCTGGATGTAGAGCGGGTGGCACATCGGCGGGCGCC
CGTCGTCGCGGTGCAGGCGTACCCGGACCTGCCGAAAGCGTCGCGCCGGC
AGATCGTCGGCGTCGGCGGCGGGGGAGGGCAAAAGCGGCGGCTCCACCAG
TCTTCCGGCAGCTGCTTCGTGCCGTGCGCCCGTCGTCGGCGGTCGGTTGA
GGGGAAGGACGTCCGCCGGGTAGAGGTCGCCGACGCCGGCGGCAGCGTCG
GGGCGAACGGGTAGAGGAAGACGCCGCCGGGCGGGGTTACCACGGCGGAG
AGTACTTGCAAGACAACATCGCGCAGGGCCTAGACCAGAGGCAGCAAGGT
GGCGCTCAGGCTCCGGCGGCGAGGGGACGGCAGCAGCAGCAGCAGCAGCA
GCAACAACAACAACAACGTGAAGGGGGGGGGCCAGACAGAAAGCAGGTTG
GCCAGCTGCGGCCTCAAACCGCAGCATTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18550:3..2031+

>mRNA_Ecto-sp13_S_contig18550.5800.1 ID=mRNA_Ecto-sp13_S_contig18550.5800.1|Name=mRNA_Ecto-sp13_S_contig18550.5800.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1131bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18550:3..2031+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTACAGCTAGCCGCGTACGTCGCACTACTGATCGCGTCGAAGAT
GGGCGAGACGTGCCCCCTCCGGATGAGAAGCTTGGCGAACCTGACCGGAA
GGATGTTCACGCCGCTTCAGGTAAAGCAGCTGGAAATGGACATGATCTCG
AAGCTCAACTTCCGGCTCGCGCCCCCGAGCCCGGACGAGGCTCTCCACTG
CCTCTCCCACTATCTCAAAAGGGCTCGCGCGAGGACCTGCTGGTTCCGCC
ACGCTCCCTACACCCTCGCCGTCGCGGCCCTGGCCACCGCCTACAACTGC
ATGGGACTGGGGAGGGAGCGGCGGCAGCTGCTCCGCGAGTGTGACGCGCG
CGCCCGCGCGGTGACGGGGAGGGGCGTCGACGTACACGGCGTGGCGGCCT
GCGCCGACGCCATGGTGAGCGACGAGAGGGCGGCAGCGGCTGCGACTGCA
GCGGCCACCGCCGCCACTAGCGGCCACGCACGTGGGAGCACCGAGTCTCC
GGTGTGCGGCGGCAGCAACACGGCTGCAAAGGACGGTTGGGGGTCGCCGA
CCGGAGTCGCTCAAGGGGCGGAGTTGCTCCAAAAGGCCGCGTTTGCGGCG
GTCGGCGTCAGGGGCGACCAGGGCACCGGGAGCGGCGGCGGCGTGCCGCT
CGTGGAAGACTTCTCGCCGCTGACGACGTTCAGCCCGCACGAAGCGGTCA
CGACGAAGGCGGTCGCTTCGCACGTGGTGACCGGGAGGCGCGTCGTTCGC
CGGGTGTCTTCTCCGCCCCGCGGCGGCGGCGCGGTGACGGCAAGACCGCG
TCGGGTCTCAACGTCGCCGTGGGACATCGCAGCGCCGCTACCTCCGGGTA
AGGCGGAGTCGCGACGGGTATCTACTTCGCCGCTGGATGTAGAGCGGGTG
GCACATCGGCGGGCGCCCGTCGTCGCGGTGCAGGCGTACCCGGACCTGCC
GAAAGCGTCGCGCCGGCAGATCGTCGGCGTCGGCGGCGGGGGAGGGCAAA
AGCGGCGGCTCCACCAGTCTTCCGGCAGCTGCTTCGTGCCGTGCGCCCGT
CGTCGGCGGTCGGTTGAGGGGAAGGACGTCCGCCGGGTAGAGGTCGCCGA
CGCCGGCGGCAGCGTCGGGGCGAACGGGTAG
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