mRNA_Ecto-sp13_S_contig1855.5797.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1855.5797.1
Unique NamemRNA_Ecto-sp13_S_contig1855.5797.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1855.5797.1 vs. uniprot
Match: A0A6H5L334_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L334_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 1.520e-29
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = -2 
Query:  407 SATAPRTPVGGTPCRPDVEDDVVLGRKGRPPKSTTSDLDWYKCTQLSAEASRAVRGVAAAERRVESRGSTSMAGCA 634
            SAT PRTPV GTPCRPDVEDDVV G+KGR P+STT+ LDWYKCTQLS EASRA+ GVAAA+RRVESRGS S AGCA
Sbjct:  398 SATEPRTPVEGTPCRPDVEDDVVAGQKGRQPESTTTGLDWYKCTQLSVEASRAIGGVAAADRRVESRGSNSTAGCA 473
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1855.5797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L334_9PHAE1.520e-2981.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1855contigEcto-sp13_S_contig1855:1934..2625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size694
Hectar predicted targeting categoryother localisation
Exons1
Cds size402
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.214094-UTR-Ecto-sp13_S_contig1855:1933..22231681462952.214094-UTR-Ecto-sp13_S_contig1855:1933..2223Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1855 1934..2223 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462952.2264771-CDS-Ecto-sp13_S_contig1855:2223..26251681462952.2264771-CDS-Ecto-sp13_S_contig1855:2223..2625Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1855 2224..2625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1855.5797.1prot_Ecto-sp13_S_contig1855.5797.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1855 2224..2625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1855.5797.1

>prot_Ecto-sp13_S_contig1855.5797.1 ID=prot_Ecto-sp13_S_contig1855.5797.1|Name=mRNA_Ecto-sp13_S_contig1855.5797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=134bp
MRRSTICQRRATTPPIIAPVNVREPLLPEPMPWAKSNAHAQPAIEVEPRD
STRRSAAATPLTALLASALSWVHLYQSKSDVVDFGGLPFRPSTTSSSTSG
RQGVPPTGVRGAVAEDEMFSLSAGSFATIAAASS
back to top

mRNA from alignment at Ecto-sp13_S_contig1855:1934..2625+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1855.5797.1 ID=mRNA_Ecto-sp13_S_contig1855.5797.1|Name=mRNA_Ecto-sp13_S_contig1855.5797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=692bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1855:1934..2625+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGCCGCACGGCGTACTGTAGAAGCAATACCGTCACAGCCTATTGTAGAG
CTCAGCCCCGTATCCTCTCCGCAACAGATTCTGCTAAACTCTGTTGGCCT
GCTATGGCCGCAACAGACATAAGATAGTCCACCTACAAGGAATAAATAAG
TTTCTCGTACCCGGTGCATGAACCCCCAGACGCAAGGAACCGTTCAGCTG
CGCGAAGATACTTCATTGGCATGATGTGTGAGGGATTCCTACCTAGCAGG
CAAGTACTGTAGTCAAGCCGCACACTTCACCACGGAGGTTATGCGACGCA
GCACGATTTGTCAGAGAAGAGCCACAACCCCTCCTATAATCGCTCCGGTG
AATGTTCGCGAACCCCTACTACCGGAGCCTATGCCTTGGGCGAAGAGTAA
TGCTCATGCGCAGCCAGCCATCGAAGTGGAGCCTCGGGATTCCACACGTC
GTTCAGCTGCCGCCACCCCCCTTACAGCCCTGCTTGCCTCAGCACTGAGC
TGGGTGCATTTGTACCAGTCCAAGTCGGATGTAGTTGATTTTGGTGGCCT
TCCCTTTCGCCCTAGCACCACGTCATCTTCCACGTCAGGACGGCAAGGGG
TGCCCCCGACAGGTGTTCGTGGTGCCGTTGCCGAAGATGAAATGTTCTCT
CTTTCGGCCGGTTCCTTCGCGACCATCGCTGCCGCTTCTTCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1855:1934..2625+

>mRNA_Ecto-sp13_S_contig1855.5797.1 ID=mRNA_Ecto-sp13_S_contig1855.5797.1|Name=mRNA_Ecto-sp13_S_contig1855.5797.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1855:1934..2625+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACGCAGCACGATTTGTCAGAGAAGAGCCACAACCCCTCCTATAAT
CGCTCCGGTGAATGTTCGCGAACCCCTACTACCGGAGCCTATGCCTTGGG
CGAAGAGTAATGCTCATGCGCAGCCAGCCATCGAAGTGGAGCCTCGGGAT
TCCACACGTCGTTCAGCTGCCGCCACCCCCCTTACAGCCCTGCTTGCCTC
AGCACTGAGCTGGGTGCATTTGTACCAGTCCAAGTCGGATGTAGTTGATT
TTGGTGGCCTTCCCTTTCGCCCTAGCACCACGTCATCTTCCACGTCAGGA
CGGCAAGGGGTGCCCCCGACAGGTGTTCGTGGTGCCGTTGCCGAAGATGA
AATGTTCTCTCTTTCGGCCGGTTCCTTCGCGACCATCGCTGCCGCTTCTT
CT
back to top