mRNA_Ecto-sp13_S_contig18545.5793.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18545.5793.1
Unique NamemRNA_Ecto-sp13_S_contig18545.5793.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: A0A6H5JXA5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXA5_9PHAE)

HSP 1 Score: 291 bits (745), Expect = 1.080e-92
Identity = 147/162 (90.74%), Postives = 151/162 (93.21%), Query Frame = 1
Query:    1 PPADAACTEETNPSSADVTLEPQFILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRWCWRNNE 486
            PPADAAC+EET  SSADV  EPQFILQEHKLGVSVHSIHPLINEAR AFPV  REYRRLRQAHSSRERMPSEES KPKEGRGG LSD+AVAAGTLLSVTRALLLVNADH SAWNTRKQLVVDGL EGSSIP+E+KLLNLIFTKHAKSPNAWAHRRWCWRNNE
Sbjct:   38 PPADAACSEETTLSSADVAPEPQFILQEHKLGVSVHSIHPLINEARGAFPVTRREYRRLRQAHSSRERMPSEESAKPKEGRGGALSDLAVAAGTLLSVTRALLLVNADHASAWNTRKQLVVDGLCEGSSIPQEVKLLNLIFTKHAKSPNAWAHRRWCWRNNE 199          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: D7G9E1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E1_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 1.320e-90
Identity = 148/163 (90.80%), Postives = 151/163 (92.64%), Query Frame = 1
Query:    1 PPADAACTEETNPSSAD-VTLEPQFILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRWCWRNNE 486
            PPADAAC EET PSS D V  EPQFILQEHKLGVSVHSIHPLINEARAAFPVA REYRRLR+AHSS ERMPSEES+KPKEGRGG LS VAVAA TLLSVTRALLLVNADHGSAWNTRKQLVVDGL EGSSIP+EIKLLNLIFTKHAKSPNAWAHRRWCWRNNE
Sbjct:   49 PPADAACPEETTPSSTDDVAPEPQFILQEHKLGVSVHSIHPLINEARAAFPVARREYRRLRRAHSSLERMPSEESSKPKEGRGGALSGVAVAAATLLSVTRALLLVNADHGSAWNTRKQLVVDGLCEGSSIPQEIKLLNLIFTKHAKSPNAWAHRRWCWRNNE 211          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: A0A7S4DGU3_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DGU3_HETAK)

HSP 1 Score: 88.6 bits (218), Expect = 1.320e-17
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 1
Query:   70 FILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRWC 471
            FIL +HKLG+S+  + PL  E+R AF +  R++                   +P  GR   L      A  L+  +RALLL+N D  +AWNTRK+L++ G  +     +E+K L+L+FTK AK P++WAHR WC
Sbjct:   78 FILIDHKLGISMSILQPLYRESREAFCILRRQWN----------------GGQPVGGRKTGLRRPGRMA--LVQSSRALLLLNPDQYTAWNTRKELILGGYLDAK---DELKFLDLVFTKQAKKPSSWAHRSWC 190          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: D8TDE4_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TDE4_SELML)

HSP 1 Score: 81.3 bits (199), Expect = 5.190e-15
Identity = 50/133 (37.59%), Postives = 75/133 (56.39%), Query Frame = 1
Query:   70 FILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRW 468
            F L++HKLG++V+++ PL  EA+A F  ALR                +EE    ++  G    +      +LL VTRALL+VN+D+ +AWNTRK+++       S +  E++L +L+ T   KS  AWAHRRW
Sbjct:   78 FWLRDHKLGIAVNALRPLYTEAQAVFS-ALR----------------AEEKQCGRQENGFSKEE------SLLKVTRALLIVNSDYSTAWNTRKRVLGKSSFSQSGMISELRLSSLVLTYAPKSEEAWAHRRW 187          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: A0A2P4XM05_9STRA (Rab-protein geranylgeranyltransferase n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XM05_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 2.300e-13
Identity = 52/142 (36.62%), Postives = 70/142 (49.30%), Query Frame = 1
Query:   43 SADVTLEPQFILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRW 468
            S+D+T E  F L++HKLGV+  +  PL   AR  F             H     +  EE           LS+       LL  TRA+LL+NAD  +AWNTRK  V  G  +     +E++  NL+FT H KS + WA+RRW
Sbjct:   35 SSDLTPETAFFLEDHKLGVAFAAGIPLFQAARTQF-------------HLLNALLLQEEDEIT-------LSEDNERRAQLLHCTRAILLINADFYTAWNTRKSFVTRGWLDAQ---DEVRFTNLVFTLHPKSIDTWAYRRW 153          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: A0A2J6L245_LACSA (Uncharacterized protein n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6L245_LACSA)

HSP 1 Score: 75.1 bits (183), Expect = 7.920e-13
Identity = 46/138 (33.33%), Postives = 72/138 (52.17%), Query Frame = 1
Query:   55 TLEPQFILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRW 468
            T E  F  ++HK+G+S  SIHPL   A+ AF  +L +Y+ L   HS           K  +      S +      L+  +RALLL++ D G+AWN RK++V++       + +E+ L +L+ +   KS   W+HRRW
Sbjct:   51 TTEMSFWSKDHKVGISTESIHPLYTAAKHAFMSSLHQYKMLIPLHS-----------KKVDNISATSSPLTGLENELMKHSRALLLLSCDFGTAWNCRKEVVLNKQDIRLYL-DELSLSSLVLSCSPKSERTWSHRRW 176          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: A0A8B8DP82_CRAVI (protein prenyltransferase alpha subunit repeat-containing protein 1-like isoform X1 n=2 Tax=Crassostrea virginica TaxID=6565 RepID=A0A8B8DP82_CRAVI)

HSP 1 Score: 72.8 bits (177), Expect = 4.930e-12
Identity = 52/142 (36.62%), Postives = 70/142 (49.30%), Query Frame = 1
Query:   58 LEPQ-----FILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRW 468
            LEP+      +LQEHKLG+   S+  L   A               Q  S R+  P  +   P               G L S+TRA+LLVNAD  +AWNTRK+LV +G     S+ E++K   L+ TKH KSP  ++HR+W
Sbjct:   35 LEPKNNKSPLVLQEHKLGLEAWSVKVLFQYA-------------YHQLISWRKNTPPTKFLDP---------------GELCSLTRAILLVNADCATAWNTRKELVDNG---DLSVTEDLKFGALVLTKHPKSPETFSHRKW 145          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: A0A2R6WK18_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WK18_MARPO)

HSP 1 Score: 72.4 bits (176), Expect = 7.840e-12
Identity = 43/135 (31.85%), Postives = 72/135 (53.33%), Query Frame = 1
Query:   70 FILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGR--GGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRW 468
            F   EHKL +S+ ++ PL   A+ AF  +  EYR++ +A  +    PS   T   +       ++       +L+S TRAL+L+N DH SAWN RK+++    +    +  E+++ +++ +   KS   WAHRRW
Sbjct:  117 FWCGEHKLAISMLALAPLYKYAKDAFTSSSAEYRKIGRAELN---SPSALGTVENQESVTATSITSKCGLEDSLMSYTRALVLINCDHASAWNMRKRILSTKTANEILLSAELRIASIVLSCAPKSEETWAHRRW 248          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: A0A6J1FGG2_CUCMO (protein prenyltransferase alpha subunit repeat-containing protein 1 isoform X2 n=1 Tax=Cucurbita moschata TaxID=3662 RepID=A0A6J1FGG2_CUCMO)

HSP 1 Score: 71.2 bits (173), Expect = 1.530e-11
Identity = 47/137 (34.31%), Postives = 70/137 (51.09%), Query Frame = 1
Query:   70 FILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVA----VAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRW 468
            F+LQ+HKLGVS   +HPL   AR  F  A R+YR              ++ T      G  LS+++    +    ++  +RALLL++ D G+AWN+RK  ++      S   +E+ L  L+ +   KS  AW HRRW
Sbjct:   64 FLLQDHKLGVSTEILHPLYIAARNTFMAATRKYRSF---------CNQDDQTVA----GNHLSELSNSFNIVESEVMKHSRALLLLSCDFGTAWNSRK-FILSKKQHLSMYLDELLLSKLVLSYFPKSEQAWCHRRW 186          
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Match: A0A3P3YKN4_PLABS (Uncharacterized protein n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YKN4_PLABS)

HSP 1 Score: 71.2 bits (173), Expect = 1.740e-11
Identity = 49/135 (36.30%), Postives = 70/135 (51.85%), Query Frame = 1
Query:   64 PQFILQEHKLGVSVHSIHPLINEARAAFPVALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTRALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNAWAHRRW 468
            P F    HKLG++ ++I           P+ +R   RL   +  R R+  E                 V A  +  VTRALLLVNADH +AW  R++L+   + + +   +E++L+NLIF+KH KS  AWAHRRW
Sbjct:   95 PPFYHNHHKLGIAFYAI-----------PILMRYVSRL--FNDMRRRLLDEPGA-------------PVDAILMHQVTRALLLVNADHYTAWAQRRRLITRSVVDEA---DELRLVNLIFSKHPKSGEAWAHRRW 200          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18545.5793.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JXA5_9PHAE1.080e-9290.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G9E1_ECTSI1.320e-9090.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4DGU3_HETAK1.320e-1738.81Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
D8TDE4_SELML5.190e-1537.59Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A2P4XM05_9STRA2.300e-1336.62Rab-protein geranylgeranyltransferase n=1 Tax=Phyt... [more]
A0A2J6L245_LACSA7.920e-1333.33Uncharacterized protein n=2 Tax=Lactuca TaxID=4235... [more]
A0A8B8DP82_CRAVI4.930e-1236.62protein prenyltransferase alpha subunit repeat-con... [more]
A0A2R6WK18_MARPO7.840e-1231.85Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A6J1FGG2_CUCMO1.530e-1134.31protein prenyltransferase alpha subunit repeat-con... [more]
A0A3P3YKN4_PLABS1.740e-1136.30Uncharacterized protein n=2 Tax=Plasmodiophora bra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18545contigEcto-sp13_S_contig18545:2381..3236 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score290.4
Seed ortholog evalue5.1e-76
Seed eggNOG ortholog2880.D7G9E1
Preferred namePTAR1
Model size486
KEGG koko:K14137
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005968,GO:0006464,GO:0006807,GO:0007275,GO:0007423,GO:0008150,GO:0008152,GO:0009987,GO:0018342,GO:0018344,GO:0019538,GO:0032501,GO:0032502,GO:0032991,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048513,GO:0048731,GO:0048856,GO:0071704,GO:0097354,GO:1901564,GO:1902494,GO:1990234
Exons2
EggNOG free text desc.protein geranylgeranylation
EggNOG OGsCOG5536@1,KOG0529@2759
Cds size486
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01006
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462951.9689343-CDS-Ecto-sp13_S_contig18545:2380..27851681462951.9689343-CDS-Ecto-sp13_S_contig18545:2380..2785Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18545 2381..2785 +
1681462951.988637-CDS-Ecto-sp13_S_contig18545:3155..32361681462951.988637-CDS-Ecto-sp13_S_contig18545:3155..3236Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18545 3156..3236 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18545.5793.1prot_Ecto-sp13_S_contig18545.5793.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18545 2381..3236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18545.5793.1

>prot_Ecto-sp13_S_contig18545.5793.1 ID=prot_Ecto-sp13_S_contig18545.5793.1|Name=mRNA_Ecto-sp13_S_contig18545.5793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=162bp
PPADAACTEETNPSSADVTLEPQFILQEHKLGVSVHSIHPLINEARAAFP
VALREYRRLRQAHSSRERMPSEESTKPKEGRGGDLSDVAVAAGTLLSVTR
ALLLVNADHGSAWNTRKQLVVDGLSEGSSIPEEIKLLNLIFTKHAKSPNA
WAHRRWCWRNNE
back to top

mRNA from alignment at Ecto-sp13_S_contig18545:2381..3236+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18545.5793.1 ID=mRNA_Ecto-sp13_S_contig18545.5793.1|Name=mRNA_Ecto-sp13_S_contig18545.5793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=856bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18545:2381..3236+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACCAGCGGACGCGGCCTGTACCGAAGAAACCAACCCGTCTTCGGCTGA TGTAACCCTTGAGCCACAGTTCATCCTCCAAGAGCACAAGCTGGGGGTGT CCGTGCACAGCATCCACCCCCTCATCAACGAAGCACGGGCAGCGTTTCCT GTCGCCCTCCGGGAATATCGTCGGCTGAGACAAGCGCACTCGTCGCGCGA ACGGATGCCAAGCGAAGAGAGTACGAAGCCCAAAGAAGGTCGGGGTGGGG ATCTTTCTGATGTTGCCGTCGCCGCGGGGACCCTCTTGTCCGTTACTCGG GCCTTGCTGTTGGTGAACGCGGATCACGGGTCTGCGTGGAACACGAGGAA GCAGCTAGTCGTGGACGGGTTGTCCGAGGGGAGCTCTATCCCGGAGGAGA TCAAGGTCGGTCAGTCGCTTGGCCGACTACTGTTTGAGTTTTGCGTGTGC GGGCTGGTTTGGTGGTCGGTGGCTAGGTTTGCTCACAGCCGACTGTCGTC TGTCTTTGTGTTTGTGGGTGATTCCATGGCAGCGTAGTTGCTGAAGAACG AACGCGCGCTTGGTCCATGGGCAAATGTCAACGAGTGTTTTCTGCAACTC GAGAAAGGTGCATACCTGTTTAACCCCAGCAAAAGATCGTGTTTTCCTCC ACTCACACTGGCAGCAACCGCCATTTCATCTCCCAGGGAAGAAATCTGAC GAATCCCGTCCATACCTCTTCAGCTTGCTCCTCTCCACGCTAACCCCACT TACCGCGGTGATACCTGCTGCGCAGCTCCTGAATTTGATATTCACCAAAC ACGCCAAGAGCCCGAACGCGTGGGCTCACCGACGATGGTGTTGGAGGAAC AACGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18545:2381..3236+

>mRNA_Ecto-sp13_S_contig18545.5793.1 ID=mRNA_Ecto-sp13_S_contig18545.5793.1|Name=mRNA_Ecto-sp13_S_contig18545.5793.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=486bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18545:2381..3236+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCACCAGCGGACGCGGCCTGTACCGAAGAAACCAACCCGTCTTCGGCTGA
TGTAACCCTTGAGCCACAGTTCATCCTCCAAGAGCACAAGCTGGGGGTGT
CCGTGCACAGCATCCACCCCCTCATCAACGAAGCACGGGCAGCGTTTCCT
GTCGCCCTCCGGGAATATCGTCGGCTGAGACAAGCGCACTCGTCGCGCGA
ACGGATGCCAAGCGAAGAGAGTACGAAGCCCAAAGAAGGTCGGGGTGGGG
ATCTTTCTGATGTTGCCGTCGCCGCGGGGACCCTCTTGTCCGTTACTCGG
GCCTTGCTGTTGGTGAACGCGGATCACGGGTCTGCGTGGAACACGAGGAA
GCAGCTAGTCGTGGACGGGTTGTCCGAGGGGAGCTCTATCCCGGAGGAGA
TCAAGCTCCTGAATTTGATATTCACCAAACACGCCAAGAGCCCGAACGCG
TGGGCTCACCGACGATGGTGTTGGAGGAACAACGAG
back to top