mRNA_Ecto-sp13_S_contig18543.5792.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18543.5792.1
Unique NamemRNA_Ecto-sp13_S_contig18543.5792.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: A0A498LK61_LABRO (Zinc finger BED domain-containing 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498LK61_LABRO)

HSP 1 Score: 79.0 bits (193), Expect = 3.240e-16
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   67 VIHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            VI     PLKWWK  E  YP LSKLA R+LAVQATS ASER+FSTA  I+T +R+ L+ +N +  IFL  N
Sbjct:  102 VISVDSNPLKWWKDNENQYPNLSKLAKRYLAVQATSVASERVFSTAGDIVTSQRAALSTENVDILIFLKKN 172          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: A0A1X7SKD3_AMPQE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7SKD3_AMPQE)

HSP 1 Score: 76.6 bits (187), Expect = 1.130e-15
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   70 IHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            IH    PL+WWK  E  +PT++++A R+L V ATS  SER+FS A L++ +KRS LT +NA+  IFLS N
Sbjct:   69 IHHDSDPLEWWKANESRFPTIARIARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFLSKN 138          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: A0A815D159_9BILA (Hypothetical protein n=1 Tax=Didymodactylos carnosus TaxID=1234261 RepID=A0A815D159_9BILA)

HSP 1 Score: 80.1 bits (196), Expect = 2.360e-15
Identity = 37/63 (58.73%), Postives = 51/63 (80.95%), Query Frame = 1
Query:   91 LKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            L+WWK K+  YP LS+LA ++L++Q++SA SER+FSTA LI +D+RSRLT DNA+  IFL+ N
Sbjct:  534 LEWWKSKQTKYPVLSELARKYLSIQSSSAPSERIFSTAGLITSDRRSRLTPDNADTIIFLNKN 596          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: A0A7T8H2B9_CALRO (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8H2B9_CALRO)

HSP 1 Score: 77.8 bits (190), Expect = 1.520e-14
Identity = 42/85 (49.41%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   25 ELTRYRAMPPEKCDVIHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            EL  Y    P    V+     PL WW      YP LSKLAF++L+VQATS +SERLFSTA  I+ D+R+RL++ NAE  I L +N
Sbjct:  480 ELNLYLTEQPVNKYVM-----PLLWWHSNRMKYPLLSKLAFKYLSVQATSVSSERLFSTAGQILNDRRNRLSESNAEKMIILHNN 559          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: A0A8C2FYL1_CYPCA (BED-type domain-containing protein n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FYL1_CYPCA)

HSP 1 Score: 77.4 bits (189), Expect = 2.090e-14
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   67 VIHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            VI     PLKWWK  E  YP LSKLA R+LAVQATS ASER+FSTA  I+T +R+ L+ +N +  IFL  N
Sbjct:  560 VISVDSNPLKWWKDNEHQYPHLSKLAKRYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKN 630          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: A0A1X7T780_AMPQE (BED-type domain-containing protein n=1 Tax=Amphimedon queenslandica TaxID=400682 RepID=A0A1X7T780_AMPQE)

HSP 1 Score: 76.6 bits (187), Expect = 3.880e-14
Identity = 36/70 (51.43%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   70 IHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            IH    PL+WWK  E  +PT++++A R+L V ATS  SER+FS A L++ +KRS LT +NA+  IFLS N
Sbjct:  522 IHHDSDPLEWWKANESRFPTIARIARRYLCVPATSVPSERVFSAAGLVINNKRSSLTPENADMLIFLSKN 591          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: A0A3B1JJI0_ASTMX (Zinc finger BED domain-containing protein 1-like n=2 Tax=Clupeocephala TaxID=186625 RepID=A0A3B1JJI0_ASTMX)

HSP 1 Score: 76.6 bits (187), Expect = 3.900e-14
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   67 VIHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            VI     PLKWWK  E  YP LSKL+  +LAVQATS ASER+FSTA  I+T +R+ L+ DN +  IFL  N
Sbjct:  557 VISVDANPLKWWKNNEHQYPNLSKLSKHYLAVQATSVASERVFSTAGDIVTAQRAALSPDNVDILIFLKKN 627          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: A0A8H3QI86_9GLOM (Zinc finger BED domain-containing protein 1-like n=1 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A8H3QI86_9GLOM)

HSP 1 Score: 75.1 bits (183), Expect = 4.180e-14
Identity = 40/88 (45.45%), Postives = 55/88 (62.50%), Query Frame = 1
Query:   25 ELTRYRAMPPEKCDVIHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSNGTL 288
            E+ RY  M   + D       PLKWW   +  YP L+ +A ++L++QATS ASER+FS A+LIM+ KR+R+ +D  E  IFL  NG L
Sbjct:  169 EIERYLVMAQIQSDQ-----DPLKWWDVNKVQYPILAHMARKYLSIQATSGASERVFSDARLIMSAKRTRMKEDLFEALIFLKRNGNL 251          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: UPI001C59CA0C (zinc finger BED domain-containing protein 4-like n=1 Tax=Cyprinus carpio TaxID=7962 RepID=UPI001C59CA0C)

HSP 1 Score: 75.5 bits (184), Expect = 5.410e-14
Identity = 40/71 (56.34%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   67 VIHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            VI     PLKWWK  E  YP LSKLA  +LAVQATS ASER+FSTA  I+T +R+ L+ +N +  IFL  N
Sbjct:  244 VISVDSNPLKWWKDNEHQYPHLSKLAKHYLAVQATSVASERVFSTAGDIVTAQRAALSPENVDILIFLKKN 314          
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Match: UPI000DC13A7D (zinc finger BED domain-containing protein 4-like n=1 Tax=Melanaphis sacchari TaxID=742174 RepID=UPI000DC13A7D)

HSP 1 Score: 73.2 bits (178), Expect = 6.410e-14
Identity = 38/85 (44.71%), Postives = 52/85 (61.18%), Query Frame = 1
Query:   25 ELTRYRAMPPEKCDVIHDLGGPLKWWKQKEELYPTLSKLAFRFLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSN 279
            EL +Y ++P            PLKWWK     +PTL+KLA ++L +Q TS  SER+FS A  ++TD RS L+ ++AE  IFLS N
Sbjct:   97 ELDKYLSLPSVSLHC-----NPLKWWKLFHSEFPTLAKLATKYLCIQGTSVLSERIFSCAGNVITDHRSSLSPEHAEELIFLSMN 176          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18543.5792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A498LK61_LABRO3.240e-1657.75Zinc finger BED domain-containing 1-like protein n... [more]
A0A1X7SKD3_AMPQE1.130e-1551.43Dimer_Tnp_hAT domain-containing protein n=1 Tax=Am... [more]
A0A815D159_9BILA2.360e-1558.73Hypothetical protein n=1 Tax=Didymodactylos carnos... [more]
A0A7T8H2B9_CALRO1.520e-1449.41Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ca... [more]
A0A8C2FYL1_CYPCA2.090e-1457.75BED-type domain-containing protein n=1 Tax=Cyprinu... [more]
A0A1X7T780_AMPQE3.880e-1451.43BED-type domain-containing protein n=1 Tax=Amphime... [more]
A0A3B1JJI0_ASTMX3.900e-1456.34Zinc finger BED domain-containing protein 1-like n... [more]
A0A8H3QI86_9GLOM4.180e-1445.45Zinc finger BED domain-containing protein 1-like n... [more]
UPI001C59CA0C5.410e-1456.34zinc finger BED domain-containing protein 4-like n... [more]
UPI000DC13A7D6.410e-1444.71zinc finger BED domain-containing protein 4-like n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18543contigEcto-sp13_S_contig18543:2760..3071 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score77.8
Seed ortholog evalue3.3e-12
Seed eggNOG ortholog400682.PAC_15700319
Model size312
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
Cds size312
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462951.9376945-CDS-Ecto-sp13_S_contig18543:2759..30711681462951.9376945-CDS-Ecto-sp13_S_contig18543:2759..3071Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18543 2760..3071 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18543.5792.1prot_Ecto-sp13_S_contig18543.5792.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18543 2760..3071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18543.5792.1

>prot_Ecto-sp13_S_contig18543.5792.1 ID=prot_Ecto-sp13_S_contig18543.5792.1|Name=mRNA_Ecto-sp13_S_contig18543.5792.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
RPYAEGLAELTRYRAMPPEKCDVIHDLGGPLKWWKQKEELYPTLSKLAFR
FLAVQATSAASERLFSTAKLIMTDKRSRLTDDNAENHIFLSSNGTLWYIS
VLS*
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mRNA from alignment at Ecto-sp13_S_contig18543:2760..3071+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18543.5792.1 ID=mRNA_Ecto-sp13_S_contig18543.5792.1|Name=mRNA_Ecto-sp13_S_contig18543.5792.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18543:2760..3071+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGTACGCTGAGGGTCTCGCCGAGCTAACCCGGTACCGCGCAATGCC CCCCGAGAAGTGCGATGTTATCCACGATCTAGGAGGCCCGCTCAAGTGGT GGAAGCAGAAAGAGGAGTTGTACCCGACTTTGTCAAAGCTTGCTTTCAGG TTCCTAGCGGTACAAGCTACTTCAGCAGCTTCGGAGCGCCTCTTTTCCAC GGCCAAATTAATCATGACTGACAAGCGCAGCAGGCTTACCGATGATAATG CCGAGAACCATATTTTCCTTAGCTCCAACGGCACTCTTTGGTATATTTCC GTTCTTTCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18543:2760..3071+

>mRNA_Ecto-sp13_S_contig18543.5792.1 ID=mRNA_Ecto-sp13_S_contig18543.5792.1|Name=mRNA_Ecto-sp13_S_contig18543.5792.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18543:2760..3071+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGCCGTACGCTGAGGGTCTCGCCGAGCTAACCCGGTACCGCGCAATGCC
CCCCGAGAAGTGCGATGTTATCCACGATCTAGGAGGCCCGCTCAAGTGGT
GGAAGCAGAAAGAGGAGTTGTACCCGACTTTGTCAAAGCTTGCTTTCAGG
TTCCTAGCGGTACAAGCTACTTCAGCAGCTTCGGAGCGCCTCTTTTCCAC
GGCCAAATTAATCATGACTGACAAGCGCAGCAGGCTTACCGATGATAATG
CCGAGAACCATATTTTCCTTAGCTCCAACGGCACTCTTTGGTATATTTCC
GTTCTTTCGTAG
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