mRNA_Ecto-sp13_S_contig18526.5787.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18526.5787.1
Unique NamemRNA_Ecto-sp13_S_contig18526.5787.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18526.5787.1 vs. uniprot
Match: A0A6H5KGM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGM3_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 6.430e-82
Identity = 126/150 (84.00%), Postives = 134/150 (89.33%), Query Frame = 1 
Query:    1 MFGGKPPPIVEEQALRAKQHRGELETFQNQRVSDVHMRRLPLYSELLASLGPVAAQELTCCDAGHQPEEGAFRELWLRYHATYSQVLKSSKDSAKETSRAPGSCDDETPQGKAGKAREEIDGCVDGGGDALSLSFKREVETVERALWRRE 450
            MFGGKPPPIVEE+ALRAKQHRGE ETFQNQ +S VH+RRLPLYSELLA LGP AA+ELTCCDAGHQPE GAFRELWLRYHATYS +LKSS DS KETS A G+ DD+TPQG+AGK REEIDGC DG GDAL LSFKREVETVERALWRRE
Sbjct:    1 MFGGKPPPIVEERALRAKQHRGESETFQNQ-LSYVHIRRLPLYSELLARLGPFAARELTCCDAGHQPEGGAFRELWLRYHATYSHILKSSVDSTKETSHAGGNFDDKTPQGEAGKVREEIDGCDDGCGDALGLSFKREVETVERALWRRE 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18526.5787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KGM3_9PHAE6.430e-8284.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18526contigEcto-sp13_S_contig18526:1571..2531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size455
Hectar predicted targeting categoryother localisation
Exons2
Cds size453
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462951.3724303-CDS-Ecto-sp13_S_contig18526:1570..16721681462951.3724303-CDS-Ecto-sp13_S_contig18526:1570..1672Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18526 1571..1672 +
1681462951.3810127-CDS-Ecto-sp13_S_contig18526:2180..25311681462951.3810127-CDS-Ecto-sp13_S_contig18526:2180..2531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18526 2181..2531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18526.5787.1prot_Ecto-sp13_S_contig18526.5787.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18526 1571..2531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18526.5787.1

>prot_Ecto-sp13_S_contig18526.5787.1 ID=prot_Ecto-sp13_S_contig18526.5787.1|Name=mRNA_Ecto-sp13_S_contig18526.5787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MFGGKPPPIVEEQALRAKQHRGELETFQNQRVSDVHMRRLPLYSELLASL
GPVAAQELTCCDAGHQPEEGAFRELWLRYHATYSQVLKSSKDSAKETSRA
PGSCDDETPQGKAGKAREEIDGCVDGGGDALSLSFKREVETVERALWRRE
I
back to top

mRNA from alignment at Ecto-sp13_S_contig18526:1571..2531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18526.5787.1 ID=mRNA_Ecto-sp13_S_contig18526.5787.1|Name=mRNA_Ecto-sp13_S_contig18526.5787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=961bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18526:1571..2531+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGGGGAAAACCGCCACCTATAGTCGAAGAGCAGGCCCTGAGGGC
GAAGCAGCACAGAGGAGAGCTGGAGACGTTTCAAAACCAGAGAGTTTCGG
ATGTGAGTAATTTGTCCGCAATTGTGACGACCACGCGCATGTTTTCCGCC
CTCGCCCTTGCAAGATATACAGTTTATGCTCCCTAAAAGGTAGACGCTAT
TGCTGTTGGACGACGGAGAACCAACTGTTAATTTATCCCTGATGCCACAC
TAACCCTACAGAGAACCTCATCAGCACGTCGGCTCTTCGCGCCCGTGCTG
CATTTAGACCTTGTGGTCAATCTTCTTTCAGCACACCTTGTACATGTGGT
CTACAGCAGTAGATCCGCTCAAAACCCTGCTCTCTCCGTTTGGTACGGCA
TCGGCTATGCGTCCTTTTGCATTACTGCGGTAATCTGTGATGCAAATCTC
TTGTTTGTGCACACGCACACGGTAACCCCATTTGTTGTCCTTCCTGCCAT
ACCCGCCCTGCTTTGGTCTTCGGTTTTGAGCTGATCATAACGAAGCTTGG
GTTTCCCCGCCTCAGCATGCCGGGCTGAATTCCTTCTTGGTGATCTTGCA
CGAAACCTAGGTGCACATGCGACGTCTCCCATTGTACTCGGAGCTGCTAG
CGAGTCTGGGTCCCGTCGCCGCCCAAGAGCTCACGTGTTGCGATGCAGGC
CACCAGCCAGAGGAAGGAGCGTTCCGGGAACTGTGGCTACGATATCATGC
TACTTACAGCCAAGTCCTCAAATCGTCAAAAGACTCGGCGAAAGAAACAA
GTCGTGCGCCGGGTAGTTGCGACGATGAAACACCGCAGGGCAAGGCTGGA
AAGGCAAGGGAAGAAATCGACGGCTGCGTTGATGGGGGTGGTGATGCGCT
CAGTTTGTCCTTCAAGAGGGAGGTGGAGACTGTCGAGCGAGCTTTGTGGA
GGCGAGAAATT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18526:1571..2531+

>mRNA_Ecto-sp13_S_contig18526.5787.1 ID=mRNA_Ecto-sp13_S_contig18526.5787.1|Name=mRNA_Ecto-sp13_S_contig18526.5787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18526:1571..2531+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTCGGGGGAAAACCGCCACCTATAGTCGAAGAGCAGGCCCTGAGGGC
GAAGCAGCACAGAGGAGAGCTGGAGACGTTTCAAAACCAGAGAGTTTCGG
ATGTGCACATGCGACGTCTCCCATTGTACTCGGAGCTGCTAGCGAGTCTG
GGTCCCGTCGCCGCCCAAGAGCTCACGTGTTGCGATGCAGGCCACCAGCC
AGAGGAAGGAGCGTTCCGGGAACTGTGGCTACGATATCATGCTACTTACA
GCCAAGTCCTCAAATCGTCAAAAGACTCGGCGAAAGAAACAAGTCGTGCG
CCGGGTAGTTGCGACGATGAAACACCGCAGGGCAAGGCTGGAAAGGCAAG
GGAAGAAATCGACGGCTGCGTTGATGGGGGTGGTGATGCGCTCAGTTTGT
CCTTCAAGAGGGAGGTGGAGACTGTCGAGCGAGCTTTGTGGAGGCGAGAA
ATT
back to top