mRNA_Ecto-sp13_S_contig18523.5784.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18523.5784.1
Unique NamemRNA_Ecto-sp13_S_contig18523.5784.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: D7G8I7_ECTSI (OTU domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8I7_ECTSI)

HSP 1 Score: 82.8 bits (203), Expect = 1.030e-17
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:   37 QLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYGEKSV 168
            +LQAEWRMLMEAVKTPS HLSSFHVFV AHVLRRPIVVYGE  V
Sbjct:  163 ELQAEWRMLMEAVKTPSAHLSSFHVFVFAHVLRRPIVVYGETYV 206
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: A0A6H5L7A1_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7A1_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 7.700e-17
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:   37 QLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYGEKSV 168
            +L+AEWRM+MEAVKTPS HLSSFHVFVLAHVLRRPIVVYG+  V
Sbjct:  192 ELRAEWRMVMEAVKTPSAHLSSFHVFVLAHVLRRPIVVYGKNHV 235
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: D8LJP6_ECTSI (Zn-finger (Ran-binding)-3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJP6_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 2.210e-12
Identity = 29/44 (65.91%), Postives = 37/44 (84.09%), Query Frame = 1 
Query:   37 QLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYGEKSV 168
            Q+ AEW ML++A KTPS +LSSFH FVLA+ LRRPI+VYG++ V
Sbjct:    5 QVIAEWHMLVQAAKTPSAYLSSFHAFVLANALRRPILVYGDRFV 48
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: A0A6H5JBZ3_9PHAE (OTU domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBZ3_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 1.030e-11
Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:   37 QLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYGEKSV 168
            Q+ AEW ML++A KTPS +LSSFH FVLA+VLRRPI+VYG++ V
Sbjct:  106 QVIAEWHMLVQAAKTPSAYLSSFHAFVLANVLRRPILVYGDRFV 149
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: A0A3P7M4G3_DIBLA (OTU domain-containing protein n=1 Tax=Dibothriocephalus latus TaxID=60516 RepID=A0A3P7M4G3_DIBLA)

HSP 1 Score: 56.6 bits (135), Expect = 4.600e-9
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   37 QLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYGEKSV 168
            QL  +WR +++A + P G L   H+FVL H+LRRP++VYG K +
Sbjct:   34 QLLRDWRSVLDAARQPRGSLEQIHIFVLCHILRRPVIVYGVKYI 77
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: A0A7E5W0X4_TRINI (Ubiquitinyl hydrolase 1 n=2 Tax=Trichoplusia ni TaxID=7111 RepID=A0A7E5W0X4_TRINI)

HSP 1 Score: 57.8 bits (138), Expect = 2.530e-8
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 ANRTHYRYPFLAQLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYG 156
            A R HY  P  AQL+AEW  L+ A   P   L   HVF LAHVLRRP++VYG
Sbjct:  428 AARLHYA-PDEAQLRAEWARLLAAAARPGAALHQLHVFALAHVLRRPVLVYG 478
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: A0A7M3RW63_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3RW63_SPIER)

HSP 1 Score: 56.6 bits (135), Expect = 6.280e-8
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   37 QLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYGEKSV 168
            QL  +WR +++A + P G L   H+FVL H+LRRP++VYG K +
Sbjct:  143 QLLRDWRSVLDAARQPRGSLEQIHIFVLCHILRRPVIVYGVKYI 186
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: UPI001C20B3F5 (ubiquitin thioesterase trabid-like n=1 Tax=Aricia agestis TaxID=91739 RepID=UPI001C20B3F5)

HSP 1 Score: 56.6 bits (135), Expect = 6.460e-8
Identity = 29/52 (55.77%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:    1 ANRTHYRYPFLAQLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYG 156
            A R HY  P  AQL+AEW  L  A   P   LS  HV+ LAHVLRRP++VYG
Sbjct:  419 AARLHYS-PEEAQLRAEWARLAAAAARPGAALSPLHVWALAHVLRRPLIVYG 469
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: A0A8J9UIS6_9NEOP ((lesser marbled fritillary) hypothetical protein n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9UIS6_9NEOP)

HSP 1 Score: 56.6 bits (135), Expect = 6.470e-8
Identity = 30/52 (57.69%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:    1 ANRTHYRYPFLAQLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYG 156
            A R HY  P  AQL+AEW  L  A   P   L   HVF LAHVLRRPI+VYG
Sbjct:  415 AARLHYA-PEDAQLRAEWARLAAAAARPGAALHQLHVFALAHVLRRPILVYG 465
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BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Match: A0A654GKV3_9CEST (Uncharacterized protein n=2 Tax=Diphyllobothriidae TaxID=28843 RepID=A0A654GKV3_9CEST)

HSP 1 Score: 56.6 bits (135), Expect = 6.480e-8
Identity = 21/44 (47.73%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:   37 QLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVVYGEKSV 168
            QL  +WR +++A + P G L   H+FVL H+LRRP++VYG K +
Sbjct:  474 QLLRDWRSVLDAARQPRGSLEQIHIFVLCHILRRPVIVYGVKYI 517
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18523.5784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8I7_ECTSI1.030e-1788.64OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7A1_9PHAE7.700e-1784.09OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LJP6_ECTSI2.210e-1265.91Zn-finger (Ran-binding)-3 n=1 Tax=Ectocarpus silic... [more]
A0A6H5JBZ3_9PHAE1.030e-1168.18OTU domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A3P7M4G3_DIBLA4.600e-947.73OTU domain-containing protein n=1 Tax=Dibothriocep... [more]
A0A7E5W0X4_TRINI2.530e-855.77Ubiquitinyl hydrolase 1 n=2 Tax=Trichoplusia ni Ta... [more]
A0A7M3RW63_SPIER6.280e-847.73Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
UPI001C20B3F56.460e-855.77ubiquitin thioesterase trabid-like n=1 Tax=Aricia ... [more]
A0A8J9UIS6_9NEOP6.470e-857.69(lesser marbled fritillary) hypothetical protein n... [more]
A0A654GKV3_9CEST6.480e-847.73Uncharacterized protein n=2 Tax=Diphyllobothriidae... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18523contigEcto-sp13_S_contig18523:409..576 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score83.2
Seed ortholog evalue4.3e-14
Seed eggNOG ortholog2880.D7G8I7
Preferred nameZRANB1
Model size168
KEGG koko:K11860,ko:K11862
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004843,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006928,GO:0006996,GO:0007010,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0008150,GO:0008152,GO:0008233,GO:0008234,GO:0009056,GO:0009057,GO:0009653,GO:0009966,GO:0009967,GO:0009987,GO:0010646,GO:0010647,GO:0016043,GO:0016477,GO:0016579,GO:0016787,GO:0019538,GO:0019783,GO:0019941,GO:0021551,GO:0022603,GO:0022604,GO:0023051,GO:0023056,GO:0030111,GO:0030163,GO:0030177,GO:0031593,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0035523,GO:0036211,GO:0036459,GO:0040011,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050793,GO:0050794,GO:0051128,GO:0051179,GO:0051603,GO:0051674,GO:0060322,GO:0060828,GO:0065007,GO:0070011,GO:0070013,GO:0070530,GO:0070536,GO:0070646,GO:0070647,GO:0071704,GO:0071840,GO:0071947,GO:0090263,GO:0101005,GO:0140030,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1990168
Exons1
EggNOG free text desc.protein deubiquitination involved in ubiquitin-dependent protein catabolic process
EggNOG OGsKOG4345@1,KOG4345@2759
EC3.4.19.12
Cds size168
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462951.246172-CDS-Ecto-sp13_S_contig18523:408..5761681462951.246172-CDS-Ecto-sp13_S_contig18523:408..576Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18523 409..576 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18523.5784.1prot_Ecto-sp13_S_contig18523.5784.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18523 409..576 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18523.5784.1

>prot_Ecto-sp13_S_contig18523.5784.1 ID=prot_Ecto-sp13_S_contig18523.5784.1|Name=mRNA_Ecto-sp13_S_contig18523.5784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=56bp
ANRTHYRYPFLAQLQAEWRMLMEAVKTPSGHLSSFHVFVLAHVLRRPIVV
YGEKSV
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mRNA from alignment at Ecto-sp13_S_contig18523:409..576-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18523.5784.1 ID=mRNA_Ecto-sp13_S_contig18523.5784.1|Name=mRNA_Ecto-sp13_S_contig18523.5784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18523:409..576- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAACCGGACACATTACCGCTACCCTTTCCTTGCGCAGTTGCAGGCGGA
ATGGCGCATGCTCATGGAGGCAGTCAAGACGCCGTCAGGCCACCTATCAT
CCTTCCACGTCTTCGTGCTCGCCCACGTCCTACGACGCCCGATAGTGGTC
TACGGGGAAAAATCTGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18523:409..576-

>mRNA_Ecto-sp13_S_contig18523.5784.1 ID=mRNA_Ecto-sp13_S_contig18523.5784.1|Name=mRNA_Ecto-sp13_S_contig18523.5784.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18523:409..576- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTAACCGGACACATTACCGCTACCCTTTCCTTGCGCAGTTGCAGGCGGA
ATGGCGCATGCTCATGGAGGCAGTCAAGACGCCGTCAGGCCACCTATCAT
CCTTCCACGTCTTCGTGCTCGCCCACGTCCTACGACGCCCGATAGTGGTC
TACGGGGAAAAATCTGTT
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