mRNA_Ecto-sp13_S_contig18510.5779.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18510.5779.1
Unique NamemRNA_Ecto-sp13_S_contig18510.5779.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: D8LPU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 1.040e-61
Identity = 119/134 (88.81%), Postives = 121/134 (90.30%), Query Frame = 1 
Query:    4 GARRLWQCTWCSVAFCMKHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASPFGDDDXXXXXXXXXXXXXXXXDGRNAPSAGATHPVQGASVGGAGEVGSGSGG 405
            G+RRLWQCTWCSVAFCMKHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRI NHHLAIPFLRPFMPGIASPFGDD+      XXXXXXXXX  GRNAPSAGAT PVQGASVGG GEV S SGG
Sbjct:  561 GSRRLWQCTWCSVAFCMKHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIANHHLAIPFLRPFMPGIASPFGDDNDANDYKXXXXXXXXX--GRNAPSAGATLPVQGASVGGGGEVRSSSGG 692
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A6H5KC98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE)

HSP 1 Score: 213 bits (541), Expect = 2.640e-61
Identity = 126/140 (90.00%), Postives = 127/140 (90.71%), Query Frame = 1 
Query:    1 AGARRLWQCTWCSVAFCMKHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASPFGDDDXXXXXXXXXXXXXXXX------DGRNAPSAGATHPVQGASVGGAGEVGSGSG 402
            AG+RRLWQCTWCSVAFCMKHLP QLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRI NHHLAIPFLRPFMPGIASPFGD  XXXXXXXXXXXXXXXX      DGR APSAG THPVQGASVGGAGEVGS SG
Sbjct:  684 AGSRRLWQCTWCSVAFCMKHLPSQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIANHHLAIPFLRPFMPGIASPFGDXXXXXXXXXXXXXXXXXXXXXXXKDGRKAPSAGVTHPVQGASVGGAGEVGSSSG 823
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A397FHH6_9STRA (PHD domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397FHH6_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 3.460e-5
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    4 GARRLWQCTWCSVAFCMKHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASP 249
              + +W C  C VA     LP  P L+   R+ +      C HC +PSP+V+LA +LE + S I  +   +PF  P + GI  P
Sbjct:   98 STKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 178
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A3L6VEF1_9STRA (PHD-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VEF1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.320e-5
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    4 GARRLWQCTWCSVAFCMKHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASP 249
              + +W C  C VA     LP  P L+   R+ +      C HC +PSP+V+LA +LE + S I  +   +PF  P + GI  P
Sbjct:  248 STKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 328
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A397DEQ7_9STRA (PHD-type domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DEQ7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.610e-5
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    4 GARRLWQCTWCSVAFCMKHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASP 249
              + +W C  C VA     LP  P L+   R+ +      C HC +PSP+V+LA +LE + S I  +   +PF  P + GI  P
Sbjct:  258 STKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 338
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A3R7E4K7_9STRA (PHD-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7E4K7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.690e-5
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    4 GARRLWQCTWCSVAFCMKHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASP 249
              + +W C  C VA     LP  P L+   R+ +      C HC +PSP+V+LA +LE + S I  +   +PF  P + GI  P
Sbjct:  523 STKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 603
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A6A4ZHF3_9STRA (PHD-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZHF3_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.720e-5
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    4 GARRLWQCTWCSVAFCMKHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASP 249
              + +W C  C VA     LP  P L+   R+ +      C HC +PSP+V+LA +LE + S I  +   +PF  P + GI  P
Sbjct:  256 STKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 336
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A397CEH7_9STRA (PHD-type domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397CEH7_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.820e-5
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    4 GARRLWQCTWCSVAFCMKHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASP 249
              + +W C  C VA     LP  P L+   R+ +      C HC +PSP+V+LA +LE + S I  +   +PF  P + GI  P
Sbjct:  464 STKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 544
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A418F0Z1_9STRA (PHD-type domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A418F0Z1_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 4.850e-5
Identity = 29/84 (34.52%), Postives = 42/84 (50.00%), Query Frame = 1 
Query:    4 GARRLWQCTWCSVAFCMKHLP--PQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASP 249
              + +W C  C VA     LP  P L+   R+ +      C HC +PSP+V+LA +LE + S I  +   +PF  P + GI  P
Sbjct:  492 STKSIWHCLHCPVAVDDTVLPSHPALSKISRREKTMV---CPHCNAPSPKVRLAKILERIWSVIATNRQGMPFCGPLLVGIDRP 572
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BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Match: A0A6G0X3E3_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3E3_9STRA)

HSP 1 Score: 51.2 bits (121), Expect = 8.790e-5
Identity = 27/83 (32.53%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:    7 ARRLWQCTWCSVAFCMKHLPPQLATAGRKARVADANQCVHCRSPSPRVKLAILLEGMCSRIINHHLAIPFLRPFMPGIASPFG 255
            ++ +W C  C +      LP   A + R ++      C HC +PSPRV+LA LLE + S +  +   +PF  P + G+  P G
Sbjct:  326 SKTMWHCLNCPIGVETSILPTHSALS-RHSKRDKTIICPHCNAPSPRVRLAKLLERIWSIVATNRQGMPFCGPLLVGVDRPPG 407
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18510.5779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LPU7_ECTSI1.040e-6188.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KC98_9PHAE2.640e-6190.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A397FHH6_9STRA3.460e-534.52PHD domain-containing protein (Fragment) n=1 Tax=A... [more]
A0A3L6VEF1_9STRA4.320e-534.52PHD-type domain-containing protein n=2 Tax=Aphanom... [more]
A0A397DEQ7_9STRA4.610e-534.52PHD-type domain-containing protein n=1 Tax=Aphanom... [more]
A0A3R7E4K7_9STRA4.690e-534.52PHD-type domain-containing protein n=2 Tax=Aphanom... [more]
A0A6A4ZHF3_9STRA4.720e-534.52PHD-type domain-containing protein n=2 Tax=Aphanom... [more]
A0A397CEH7_9STRA4.820e-534.52PHD-type domain-containing protein n=5 Tax=Aphanom... [more]
A0A418F0Z1_9STRA4.850e-534.52PHD-type domain-containing protein n=2 Tax=Aphanom... [more]
A0A6G0X3E3_9STRA8.790e-532.53Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18510contigEcto-sp13_S_contig18510:1052..1855 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score216.5
Seed ortholog evalue7.8e-54
Seed eggNOG ortholog2880.D8LPU7
Model size406
Hectar predicted targeting categorymitochondrion
Exons2
EggNOG free text desc.PHD-finger
EggNOG OGs294SK@1,2RBQ1@2759
Cds size405
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462950.6774151-CDS-Ecto-sp13_S_contig18510:1051..11971681462950.6774151-CDS-Ecto-sp13_S_contig18510:1051..1197Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18510 1052..1197 +
1681462950.690558-CDS-Ecto-sp13_S_contig18510:1596..18551681462950.690558-CDS-Ecto-sp13_S_contig18510:1596..1855Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18510 1597..1855 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18510.5779.1prot_Ecto-sp13_S_contig18510.5779.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18510 1052..1855 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18510.5779.1

>prot_Ecto-sp13_S_contig18510.5779.1 ID=prot_Ecto-sp13_S_contig18510.5779.1|Name=mRNA_Ecto-sp13_S_contig18510.5779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
AGARRLWQCTWCSVAFCMKHLPPQLATAGRKARVADANQCVHCRSPSPRV
KLAILLEGMCSRIINHHLAIPFLRPFMPGIASPFGDDDDRNDYEEELEEE
EEEEDGRNAPSAGATHPVQGASVGGAGEVGSGSGG
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mRNA from alignment at Ecto-sp13_S_contig18510:1052..1855+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18510.5779.1 ID=mRNA_Ecto-sp13_S_contig18510.5779.1|Name=mRNA_Ecto-sp13_S_contig18510.5779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18510:1052..1855+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGGGCGAGGCGGCTGTGGCAGTGCACGTGGTGCTCGGTGGCGTTCTG
CATGAAGCACCTGCCGCCGCAGCTGGCGACGGCGGGGAGGAAGGCGCGCG
TCGCGGATGCGAATCAGTGCGTGCACTGCAGGTCACCGTCGCCGAGGTAC
GCTCGTTTTGTTTTGCGTTGCGGCGGTGCTGTTTCAAGGGTGGTGTACAC
ATGTGCGATGCTTGTTGCTTTGCAGGCGTCGTAGGGTGTGCGCGTGAGAG
CTGTGTAGGGTAGTGCGGTTCGTATACGTTTGCGTTGTATACGTTTGCGA
TGTTTTTTGCTTTGCAGACGTGTTTAGGTGTGCACGTGGGTGCTGTGACT
TTGTGGATGTGTGTTTTGTCCGTTTTCTCCCCTTCCAACATTATTTGCTG
TCCATGCATCTCTCTGGCTACATGCCCCGACTTCTCTTCTCCAAACGCAC
CTCTTCTCTCTCTTGTTTCCGTACCCGACCCTTGCTTTTTGTTGTCTCTC
TTCTTTCGTTGGCGTGATTTTTTGCCTTACCTTCCTCCCCGCCAGAGTAA
AGCTAGCGATTCTCTTGGAGGGCATGTGCTCGCGAATCATTAACCACCAC
CTGGCGATCCCCTTCTTGAGGCCGTTTATGCCCGGCATCGCGTCACCCTT
TGGCGACGACGACGACCGTAACGACTACGAGGAGGAGCTGGAGGAGGAGG
AGGAGGAGGAAGACGGTCGCAACGCGCCTAGTGCCGGGGCCACGCATCCC
GTACAAGGAGCGTCGGTGGGGGGGGCGGGCGAGGTGGGGAGTGGTAGTGG
CGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18510:1052..1855+

>mRNA_Ecto-sp13_S_contig18510.5779.1 ID=mRNA_Ecto-sp13_S_contig18510.5779.1|Name=mRNA_Ecto-sp13_S_contig18510.5779.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18510:1052..1855+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGGGCGAGGCGGCTGTGGCAGTGCACGTGGTGCTCGGTGGCGTTCTG
CATGAAGCACCTGCCGCCGCAGCTGGCGACGGCGGGGAGGAAGGCGCGCG
TCGCGGATGCGAATCAGTGCGTGCACTGCAGGTCACCGTCGCCGAGAGTA
AAGCTAGCGATTCTCTTGGAGGGCATGTGCTCGCGAATCATTAACCACCA
CCTGGCGATCCCCTTCTTGAGGCCGTTTATGCCCGGCATCGCGTCACCCT
TTGGCGACGACGACGACCGTAACGACTACGAGGAGGAGCTGGAGGAGGAG
GAGGAGGAGGAAGACGGTCGCAACGCGCCTAGTGCCGGGGCCACGCATCC
CGTACAAGGAGCGTCGGTGGGGGGGGCGGGCGAGGTGGGGAGTGGTAGTG
GCGGC
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