mRNA_Ecto-sp13_S_contig18510.5778.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18510.5778.1
Unique NamemRNA_Ecto-sp13_S_contig18510.5778.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18510.5778.1 vs. uniprot
Match: A0A6H5KC98_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC98_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.020e-70
Identity = 110/112 (98.21%), Postives = 111/112 (99.11%), Query Frame = 1 
Query:   49 ELPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKRDSSNAGLVVLAPPLAGRSGVSGVGG 384
            ELPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEK+D SNAGLVVLAPPLAGRSGVSGVGG
Sbjct:  554 ELPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKKDISNAGLVVLAPPLAGRSGVSGVGG 665
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BLAST of mRNA_Ecto-sp13_S_contig18510.5778.1 vs. uniprot
Match: D8LPU7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPU7_ECTSI)

HSP 1 Score: 235 bits (600), Expect = 2.260e-69
Identity = 108/111 (97.30%), Postives = 110/111 (99.10%), Query Frame = 1 
Query:   52 LPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKRDSSNAGLVVLAPPLAGRSGVSGVGG 384
            LPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEK+DSSNAGLVVLA PL+GRSGVSGVGG
Sbjct:  431 LPPPCFICKDDITHWGPNAGNGEAISCARDGCGRVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLGEKKDSSNAGLVVLASPLSGRSGVSGVGG 541
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18510.5778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KC98_9PHAE1.020e-7098.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LPU7_ECTSI2.260e-6997.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18510contigEcto-sp13_S_contig18510:614..998 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score237.3
Seed ortholog evalue4e-60
Seed eggNOG ortholog2880.D8LPU7
Model size385
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.PHD-finger
EggNOG OGs294SK@1,2RBQ1@2759
Cds size384
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462950.646949-CDS-Ecto-sp13_S_contig18510:613..9971681462950.646949-CDS-Ecto-sp13_S_contig18510:613..997Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18510 614..997 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18510.5778.1prot_Ecto-sp13_S_contig18510.5778.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18510 614..997 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18510.5778.1

>prot_Ecto-sp13_S_contig18510.5778.1 ID=prot_Ecto-sp13_S_contig18510.5778.1|Name=mRNA_Ecto-sp13_S_contig18510.5778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=128bp
GAEAAAAVAAAAAAAAELPPPCFICKDDITHWGPNAGNGEAISCARDGCG
RVFHVTCVAYLLQDAAARTPGGCGAEAGTWECPLHRCACCGADENGLQLG
EKRDSSNAGLVVLAPPLAGRSGVSGVGG
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mRNA from alignment at Ecto-sp13_S_contig18510:614..998+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18510.5778.1 ID=mRNA_Ecto-sp13_S_contig18510.5778.1|Name=mRNA_Ecto-sp13_S_contig18510.5778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=385bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18510:614..998+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCGGAGGCAGCGGCGGCAGTCGCTGCCGCCGCCGCCGCCGCGGCCGA
ACTGCCGCCCCCGTGTTTCATCTGCAAGGACGACATAACGCACTGGGGCC
CGAACGCGGGGAACGGGGAGGCCATAAGCTGTGCCCGCGACGGGTGCGGG
AGGGTGTTTCACGTGACCTGCGTGGCCTACCTTCTCCAGGACGCGGCGGC
GCGAACTCCGGGGGGCTGCGGCGCCGAGGCGGGCACGTGGGAGTGCCCGT
TACACCGGTGCGCGTGCTGCGGTGCCGACGAAAACGGCCTGCAGCTGGGG
GAGAAGAGGGACAGCAGCAACGCGGGGCTTGTGGTGTTGGCGCCGCCTTT
GGCGGGCAGGAGTGGCGTAAGCGGCGTCGGCGGTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18510:614..998+

>mRNA_Ecto-sp13_S_contig18510.5778.1 ID=mRNA_Ecto-sp13_S_contig18510.5778.1|Name=mRNA_Ecto-sp13_S_contig18510.5778.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=384bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18510:614..998+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGCGCGGAGGCAGCGGCGGCAGTCGCTGCCGCCGCCGCCGCCGCGGCCGA
ACTGCCGCCCCCGTGTTTCATCTGCAAGGACGACATAACGCACTGGGGCC
CGAACGCGGGGAACGGGGAGGCCATAAGCTGTGCCCGCGACGGGTGCGGG
AGGGTGTTTCACGTGACCTGCGTGGCCTACCTTCTCCAGGACGCGGCGGC
GCGAACTCCGGGGGGCTGCGGCGCCGAGGCGGGCACGTGGGAGTGCCCGT
TACACCGGTGCGCGTGCTGCGGTGCCGACGAAAACGGCCTGCAGCTGGGG
GAGAAGAGGGACAGCAGCAACGCGGGGCTTGTGGTGTTGGCGCCGCCTTT
GGCGGGCAGGAGTGGCGTAAGCGGCGTCGGCGGT
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