mRNA_Ecto-sp13_S_contig18505.5777.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18505.5777.1
Unique NamemRNA_Ecto-sp13_S_contig18505.5777.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: D8LNK7_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK7_ECTSI)

HSP 1 Score: 135 bits (339), Expect = 3.220e-35
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 QVVRDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFRWVD 204
            QVVRDF DVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSF   D
Sbjct:  214 QVVRDFKDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFSPDD 281
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: A0A6H5K536_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K536_9PHAE)

HSP 1 Score: 134 bits (338), Expect = 4.420e-35
Identity = 64/68 (94.12%), Postives = 64/68 (94.12%), Query Frame = 1 
Query:    1 QVVRDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFRWVD 204
            QVVRDF DVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSF   D
Sbjct:  200 QVVRDFEDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFSPDD 267
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: A0A835ZCY9_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY9_9STRA)

HSP 1 Score: 102 bits (253), Expect = 1.340e-23
Identity = 46/67 (68.66%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:    4 VVRDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFRWVD 204
            VVR F+ +H++HINISRFAN SPF+FATSSFDKTVK WD+RVRA++ PIYTC S  GHVM+ F   D
Sbjct:   61 VVRTFLKIHDNHINISRFANQSPFLFATSSFDKTVKMWDARVRAEHRPIYTCTSSQGHVMVCFSPDD 127
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: A0A4D9D8W8_9STRA (BTB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8W8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.400e-18
Identity = 40/67 (59.70%), Postives = 48/67 (71.64%), Query Frame = 1 
Query:    4 VVRDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFRWVD 204
            +VR F  +H DHINISRFANHSP +FA+SSFDK++K WD R  A   P+YT  SE GHVM+ F   D
Sbjct:  179 IVRRFESIHSDHINISRFANHSPHLFASSSFDKSIKLWDLRC-AGTRPLYTARSEQGHVMVCFSPED 244
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: A0A7S1CMT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMT7_9STRA)

HSP 1 Score: 83.2 bits (204), Expect = 5.630e-17
Identity = 38/68 (55.88%), Postives = 51/68 (75.00%), Query Frame = 1 
Query:    1 QVVRDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFRWVD 204
            ++ R F ++H DHINI+RFA+HSP +FATSSFD+T+K WD R+R D  P YTC S+ G+V+L F   D
Sbjct:   65 KLARVFSEIHTDHINITRFAHHSPNLFATSSFDRTIKVWDLRMR-DRKPNYTCRSDRGNVILCFSPDD 131
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: A0A835YWL6_9STRA (Quinon protein alcohol dehydrogenase-like superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL6_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.210e-15
Identity = 37/52 (71.15%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    4 VVRDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTC 159
            V R F D+H++HINISRFAN SPF+FATSSFDKTVK WD+RVRAD++  Y C
Sbjct:  196 VCRAFKDIHKNHINISRFANQSPFLFATSSFDKTVKMWDARVRADHS--YVC 245
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: A0A7S1XL40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XL40_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 5.110e-15
Identity = 37/61 (60.66%), Postives = 43/61 (70.49%), Query Frame = 1 
Query:   10 RDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSF 192
            R F ++H  HINISRFAN SP VFATSSFD+TVK WD R   D  P+Y C+S  G VM +F
Sbjct:  120 RSFPNIHAGHINISRFANTSPHVFATSSFDRTVKTWDIRTPRDR-PLYQCNSTEGLVMCTF 179
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: A0A4D8Y5A5_SALSN (Uncharacterized protein n=1 Tax=Salvia splendens TaxID=180675 RepID=A0A4D8Y5A5_SALSN)

HSP 1 Score: 75.1 bits (183), Expect = 3.600e-14
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    7 VRDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFRWVD 204
            ++DF D+H++HIN+ +F+NHSP +FATSSFD+ VK WD R +  N P YT  S  G+VM+ F   D
Sbjct:  224 LQDFADMHQEHINVVKFSNHSPSLFATSSFDQNVKMWDIRQKP-NQPCYTASSSRGNVMVCFSPDD 288
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: A0A565C9T9_9BRAS (LRRcap domain-containing protein n=1 Tax=Arabis nemorensis TaxID=586526 RepID=A0A565C9T9_9BRAS)

HSP 1 Score: 75.1 bits (183), Expect = 3.910e-14
Identity = 35/63 (55.56%), Postives = 45/63 (71.43%), Query Frame = 1 
Query:   16 FMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFRWVD 204
            F D+H++HIN+ +FANHSPF+FATSSFDK VK WD R +  + P YT  S  G+VM+ F   D
Sbjct:  565 FADMHQEHINVVKFANHSPFLFATSSFDKDVKLWDLR-QEPSRPCYTASSTKGNVMVCFSPDD 626
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BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Match: UPI002008F228 (uncharacterized protein LOC125222733 isoform X1 n=3 Tax=Salvia TaxID=21880 RepID=UPI002008F228)

HSP 1 Score: 75.1 bits (183), Expect = 3.910e-14
Identity = 34/66 (51.52%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    7 VRDFMDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSEMGHVMLSFRWVD 204
            ++DF D+H++HIN+ +F+NHSP +FATSSFD+ VK WD R +  N P YT  S  G+VM+ F   D
Sbjct:  604 LQDFADMHQEHINVVKFSNHSPSLFATSSFDQNVKMWDIRQKP-NQPCYTASSSRGNVMVCFSPDD 668
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18505.5777.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNK7_ECTSI3.220e-3594.12BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K536_9PHAE4.420e-3594.12BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835ZCY9_9STRA1.340e-2368.66BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A4D9D8W8_9STRA6.400e-1859.70BTB domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S1CMT7_9STRA5.630e-1755.88Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A835YWL6_9STRA1.210e-1571.15Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A7S1XL40_9STRA5.110e-1560.66Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A4D8Y5A5_SALSN3.600e-1451.52Uncharacterized protein n=1 Tax=Salvia splendens T... [more]
A0A565C9T9_9BRAS3.910e-1455.56LRRcap domain-containing protein n=1 Tax=Arabis ne... [more]
UPI002008F2283.910e-1451.52uncharacterized protein LOC125222733 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18505contigEcto-sp13_S_contig18505:2375..3342 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score123.2
Seed ortholog evalue4.4e-26
Seed eggNOG ortholog2880.D8LNK7
Preferred nameLRRIQ1
Model size216
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size198
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462950.5919597-CDS-Ecto-sp13_S_contig18505:2374..24851681462950.5919597-CDS-Ecto-sp13_S_contig18505:2374..2485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18505 2375..2485 -
1681462950.6074047-CDS-Ecto-sp13_S_contig18505:3237..33241681462950.6074047-CDS-Ecto-sp13_S_contig18505:3237..3324Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18505 3238..3324 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462950.6166172-UTR-Ecto-sp13_S_contig18505:3324..33421681462950.6166172-UTR-Ecto-sp13_S_contig18505:3324..3342Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18505 3325..3342 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18505.5777.1prot_Ecto-sp13_S_contig18505.5777.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18505 2375..3324 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18505.5777.1

>prot_Ecto-sp13_S_contig18505.5777.1 ID=prot_Ecto-sp13_S_contig18505.5777.1|Name=mRNA_Ecto-sp13_S_contig18505.5777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=66bp
MDVHEDHINISRFANHSPFVFATSSFDKTVKAWDSRVRADNAPIYTCHSE
MGHVMLSFRWVDGSG*
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mRNA from alignment at Ecto-sp13_S_contig18505:2375..3342-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18505.5777.1 ID=mRNA_Ecto-sp13_S_contig18505.5777.1|Name=mRNA_Ecto-sp13_S_contig18505.5777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=968bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18505:2375..3342- (Ectocarpus species13 EcNAP12_S_4_19m)
CAGGTGGTTCGAGATTTCATGGATGTACACGAGGATCACATCAACATCAG
CCGGTTCGCGAACCACTCGCCCTTCGTCTTCGCCACGTCTAGCTTCGACA
AGACGGTGAGAGAGCACACGGCAGTATTCTCCTATTCTCCTACATAGTAT
CGCAGCACTCTAAAATCCAATAGTAGAGATGTATAACTCTGTGTACATGT
ATGGTCATGCTAAATCCTATGCTATGTTCTTGGTATATCCTTCCTTTACC
TGGTATATTTCTAGATTTGATAGTTTAAAAGCACACAATGAATAACATTT
GACCGTTGATCAGGTGTAAGCTTCATGTCTTTCCTTCATGGTAATGTCCA
GGGTGTACGGTCTACATATGATAATTCTATATCCCATGTACTATGCAAGA
TTGGGACTGCTGTCAGCAAGATTGGTCGACCGCGGTTCATTTATCTCCTG
GAAATTTGCGGATTTGCGGAGGGGGAGGTGTATGCACTGCTGTCTTGAGG
GGTGGTAATAGAATCATCGCACCGCTTTCAGCGATATGTTACGAAAGCAA
TGTCTTTTGACGTGTTCCTTCGTTGATGTTTGCGCGGTGCTGCGAGGGCT
TTTGCAAGAGCTGCACTGTAGTTCTGTAGGACCGGCGGGATTTTGGGCGC
AAATCGAAGGTTTATTGCGAGGCGTATGCTCTGGGTTCGCAGCAAGGCTT
GGCCCTCTTTTGTTGCATACGCGGCTACATTGTCCACTTTTCACCGACGA
TGTCCCGTGGTGTGATGACGATTCTGGAATCATTGCATAGGAGGCTCACA
TTGGTGTGTGTTGGGTACGCTGTGTGCTCGCGAACGTGATGGATTGGATT
GTGTCAGGTGAAAGCATGGGATTCTCGGGTGCGCGCGGACAACGCCCCGA
TCTACACGTGCCATTCGGAGATGGGGCACGTCATGTTGAGCTTCAGGTGG
GTGGATGGGTCGGGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18505:2375..3342-

>mRNA_Ecto-sp13_S_contig18505.5777.1 ID=mRNA_Ecto-sp13_S_contig18505.5777.1|Name=mRNA_Ecto-sp13_S_contig18505.5777.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18505:2375..3342- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATGTACACGAGGATCACATCAACATCAGCCGGTTCGCGAACCACTC
GCCCTTCGTCTTCGCCACGTCTAGCTTCGACAAGACGGTGAAAGCATGGG
ATTCTCGGGTGCGCGCGGACAACGCCCCGATCTACACGTGCCATTCGGAG
ATGGGGCACGTCATGTTGAGCTTCAGGTGGGTGGATGGGTCGGGGTGA
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