mRNA_Ecto-sp13_S_contig18505.5776.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18505.5776.1
Unique NamemRNA_Ecto-sp13_S_contig18505.5776.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: D8LNK7_ECTSI (BTB domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK7_ECTSI)

HSP 1 Score: 189 bits (481), Expect = 6.710e-54
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 282
            SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR
Sbjct:  278 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 371
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A6H5K536_9PHAE (BTB domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K536_9PHAE)

HSP 1 Score: 189 bits (481), Expect = 8.200e-54
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 282
            SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR
Sbjct:  264 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 357
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A835YWL6_9STRA (Quinon protein alcohol dehydrogenase-like superfamily (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWL6_9STRA)

HSP 1 Score: 138 bits (347), Expect = 2.060e-37
Identity = 67/93 (72.04%), Postives = 77/93 (82.80%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLD--ENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQ 273
            SPDD FLLTSAVDNEV QYL +DGR H+ LDVP T  +  ENFTR+YYT+SGR ILSGSSEE+ VRL+C+ TGRL H+ EMYPGRKH SLY+Q
Sbjct:  276 SPDDAFLLTSAVDNEVTQYLTVDGRHHLKLDVPSTAANRAENFTRAYYTASGRFILSGSSEERAVRLHCSATGRLAHAVEMYPGRKHDSLYIQ 368
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A835ZCY9_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCY9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.130e-37
Identity = 76/109 (69.72%), Postives = 84/109 (77.06%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLD--ENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMY-------------PGRKHGSLYVQSLR 282
            SPDDVFLLTSAVDNEV QYLA+DGRLH+ LDVP   L+  ENFTRSYYT+SGR I+SGSSEEQ+VRL+CA TGRL  +AEMY             PGRKH SLYVQSLR
Sbjct:  124 SPDDVFLLTSAVDNEVSQYLAVDGRLHLKLDVPSASLNAHENFTRSYYTASGRFIISGSSEEQSVRLHCANTGRLARAAEMYVETSTSTVAARAYPGRKHESLYVQSLR 232
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A7S4DG36_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DG36_HETAK)

HSP 1 Score: 128 bits (322), Expect = 1.960e-35
Identity = 60/94 (63.83%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 282
            +PDD  LL +AVDN+V +YL LDGR  + L +P+ GL++NFTR+YY++SGRLILSGSSEEQ VR++CA+TG  +  AEM+PGR+H SLYVQSLR
Sbjct:    9 APDDARLLAAAVDNDVAEYLVLDGRRRLRLAIPRLGLEDNFTRAYYSASGRLILSGSSEEQVVRVHCARTGAAVARAEMFPGRRHPSLYVQSLR 102
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A7S1CMT7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CMT7_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.290e-34
Identity = 61/94 (64.89%), Postives = 78/94 (82.98%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 282
            SPDD++LLTSAVDNE++QY   DGRLH+ LDV KTG  +N+TRSYY + G +I+SGSSEE+ +RL+CA TG L+HSA++YPGRK   LY+QSLR
Sbjct:  128 SPDDLYLLTSAVDNEIRQYTVQDGRLHLHLDVVKTGRSDNYTRSYYMNGGDVIVSGSSEEKVLRLHCAHTGELLHSADLYPGRKSPLLYIQSLR 221
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A7S2W5J7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W5J7_9STRA)

HSP 1 Score: 115 bits (288), Expect = 1.590e-29
Identity = 56/94 (59.57%), Postives = 72/94 (76.60%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 282
            SPDD  LLTSAVDNEV+Q++ L+GR H +  V +TGL +NFTR+YY+ SGR +LSGSSEE  VR+Y + TG L+ S  MYP R++  LY+QSLR
Sbjct:   52 SPDDTHLLTSAVDNEVRQFMTLNGRSHQEFRV-QTGLADNFTRAYYSCSGRYVLSGSSEEDAVRIYDSSTGTLLRSTSMYPRRRYAGLYIQSLR 144
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A4D9D8W8_9STRA (BTB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D8W8_9STRA)

HSP 1 Score: 119 bits (297), Expect = 5.280e-29
Identity = 60/95 (63.16%), Postives = 76/95 (80.00%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLD-VPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 282
            SP+DV LL S VDN++ Q  A+DGR+ + L  +PKTGL +N+TR+YYT+SG+ ILSGSSEEQ VR++CAQTG  + S E YPGR+H SLYVQSLR
Sbjct:  241 SPEDVHLLASRVDNDIVQLEAVDGRIALHLKGLPKTGLADNYTRAYYTASGQAILSGSSEEQDVRVHCAQTGDALASFEAYPGRRHHSLYVQSLR 335
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A7S3HAX2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HAX2_9STRA)

HSP 1 Score: 112 bits (281), Expect = 2.050e-27
Identity = 52/94 (55.32%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 282
            S DD F+L SA+DNE+ QY  LDGR H+  ++PKTGL  NFTR+YY++SGR  L+G+ EE +V++ CA TG  +   E+YPG+K  SLY+QSLR
Sbjct:   85 SKDDNFILASALDNEINQYFFLDGRKHLTYNLPKTGLKGNFTRAYYSASGRHTLTGACEESSVKVMCAYTGETLSQIELYPGKKDKSLYIQSLR 178
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BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Match: A0A7S0DQP5_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DQP5_9EUKA)

HSP 1 Score: 111 bits (278), Expect = 1.930e-26
Identity = 50/94 (53.19%), Postives = 70/94 (74.47%), Query Frame = 1 
Query:    1 SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSGRLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLR 282
            SPDD++ L+SAVDNEVKQY  +DGRLH++ D+       N+TRSYY + G L++SGSS +  V + C+ TG++I+S  MY GR+H +LY+QSLR
Sbjct:  222 SPDDMYYLSSAVDNEVKQYQTVDGRLHLNYDIKPIHSSINYTRSYYANGGDLVVSGSSNDDVVHICCSSTGKIINSIRMYEGRRHPNLYIQSLR 315
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18505.5776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNK7_ECTSI6.710e-54100.00BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5K536_9PHAE8.200e-54100.00BTB domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835YWL6_9STRA2.060e-3772.04Quinon protein alcohol dehydrogenase-like superfam... [more]
A0A835ZCY9_9STRA3.130e-3769.72BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S4DG36_HETAK1.960e-3563.83Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S1CMT7_9STRA5.290e-3464.89Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A7S2W5J7_9STRA1.590e-2959.57Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A4D9D8W8_9STRA5.280e-2963.16BTB domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A7S3HAX2_9STRA2.050e-2755.32Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A7S0DQP5_9EUKA1.930e-2653.19Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18505contigEcto-sp13_S_contig18505:578..1354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score191.4
Seed ortholog evalue2e-46
Seed eggNOG ortholog2880.D8LNK7
Preferred nameLRRIQ1
Model size306
KEGG koko:K14963
KEGG Pathwayko04934,map04934
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.axoneme assembly
EggNOG OGsCOG4886@1,KOG0531@2759
Cds size306
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462950.548907-CDS-Ecto-sp13_S_contig18505:577..7311681462950.548907-CDS-Ecto-sp13_S_contig18505:577..731Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18505 578..731 -
1681462950.5608916-CDS-Ecto-sp13_S_contig18505:1202..13541681462950.5608916-CDS-Ecto-sp13_S_contig18505:1202..1354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18505 1203..1354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18505.5776.1prot_Ecto-sp13_S_contig18505.5776.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18505 578..1354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18505.5776.1

>prot_Ecto-sp13_S_contig18505.5776.1 ID=prot_Ecto-sp13_S_contig18505.5776.1|Name=mRNA_Ecto-sp13_S_contig18505.5776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp
SPDDVFLLTSAVDNEVKQYLALDGRLHMDLDVPKTGLDENFTRSYYTSSG
RLILSGSSEEQTVRLYCAQTGRLIHSAEMYPGRKHGSLYVQSLRWALVRG
V*
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mRNA from alignment at Ecto-sp13_S_contig18505:578..1354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18505.5776.1 ID=mRNA_Ecto-sp13_S_contig18505.5776.1|Name=mRNA_Ecto-sp13_S_contig18505.5776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=777bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18505:578..1354- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCCGGACGACGTGTTCCTGCTGACCTCGGCGGTGGACAACGAGGTGAA
GCAGTACCTAGCCTTGGACGGGCGGCTGCACATGGACCTCGACGTGCCCA
AGACGGGCTTGGACGAGAACTTCACCAGGTCCTACTACACGTCCAGCGGC
AGGTGGGAGTTGCGGTGGCGTTTGGGGGGGGGGGGGGTGCTGTTGGTGTG
GTTGTCCAGCGGGTCGTGGTTTTCCCTCCCCCGCCGAGAACGAGAACATA
AAAAAGACCTGTGTCTGCGTTCCTCCTTCAACTGTGTCATGTACACCTCT
CTTTTTTTGTCTCTCTCGTCTTGATAAAACAATCGACTACGATGGGTGCT
TTTGTCCGGTAATTAATAACCTTGTCCCCAATCATTTTTCTGCCAAAGTT
AAACGGTGTGCGTTTCCCGTCGTGCATGCACGCGTCATCGTCTGCCGTGA
AACGACAAGTGTTCGAAACGGCACCCGCGTTGAAACGACAATTGTTTGAA
ACGGCACCTGCGTTGAATCGGCTCCATCGTCTAAACGGCACTTGTTTGAA
ACGGCACTTGCGTCGAAACGGCATTTGCGTTGAAACGGCACTTGTTTTTG
AAACGGCACTTGTTTTTTCCCAGGCTCATCCTCTCGGGGTCCTCGGAAGA
GCAGACCGTTCGCCTCTACTGCGCTCAGACGGGGCGGCTCATCCACTCGG
CTGAGATGTACCCTGGTCGCAAGCACGGGTCGTTGTACGTGCAGTCCTTG
AGGTGGGCACTCGTGCGTGGCGTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18505:578..1354-

>mRNA_Ecto-sp13_S_contig18505.5776.1 ID=mRNA_Ecto-sp13_S_contig18505.5776.1|Name=mRNA_Ecto-sp13_S_contig18505.5776.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18505:578..1354- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCCCGGACGACGTGTTCCTGCTGACCTCGGCGGTGGACAACGAGGTGAA
GCAGTACCTAGCCTTGGACGGGCGGCTGCACATGGACCTCGACGTGCCCA
AGACGGGCTTGGACGAGAACTTCACCAGGTCCTACTACACGTCCAGCGGC
AGGCTCATCCTCTCGGGGTCCTCGGAAGAGCAGACCGTTCGCCTCTACTG
CGCTCAGACGGGGCGGCTCATCCACTCGGCTGAGATGTACCCTGGTCGCA
AGCACGGGTCGTTGTACGTGCAGTCCTTGAGGTGGGCACTCGTGCGTGGC
GTGTAA
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