mRNA_Ecto-sp13_S_contig1849.5767.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1849.5767.1
Unique NamemRNA_Ecto-sp13_S_contig1849.5767.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1849.5767.1 vs. uniprot
Match: D7G8A3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8A3_ECTSI)

HSP 1 Score: 389 bits (1000), Expect = 6.540e-132
Identity = 197/215 (91.63%), Postives = 202/215 (93.95%), Query Frame = 1 
Query:    1 MLARIKEYFEDRGVTASNLPKVIVVHECLSVAFLALTWAICYQLQPTQA-MFAPINKTIQNSNNAFIVRSRQSFEALIAKSEKRLSQDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTNMGTRRPLVKEASSETGGWGWLRKGRRSGKRRKAICPPGRRGVGRAPGCFVALPQAAYGPSLRSSK*IC 642
            MLARIKEYFEDRGVTASNLPKVIVVHECLSVAFLALTWA+CYQ+QPTQ  + APINKTIQNSNNAFIVRSRQSFEALI+KSEKRLSQDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTN GTRRPLVKEA+S T GWGWLRKGRRSGKR K ICPPGRRG GRAPGCFV LPQAA GP LRSSK IC
Sbjct:    1 MLARIKEYFEDRGVTASNLPKVIVVHECLSVAFLALTWAVCYQIQPTQGPVLAPINKTIQNSNNAFIVRSRQSFEALISKSEKRLSQDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTNSGTRRPLVKEAASGTRGWGWLRKGRRSGKRGKTICPPGRRGGGRAPGCFVVLPQAASGPFLRSSKEIC 215
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BLAST of mRNA_Ecto-sp13_S_contig1849.5767.1 vs. uniprot
Match: A0A6H5JVT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT6_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 3.900e-62
Identity = 107/117 (91.45%), Postives = 107/117 (91.45%), Query Frame = 1 
Query:  295 MAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTNMGTRRPLVKEASSETGGWGWLRKGRRSGKRRKAICPPGRRGVGRAPGCFVALPQAAYGPSL-RSSK*IC 642
            MAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTN  TRRPLVKEASS TGGWGWLRKGRRSGKRRKAICPPGRRG GR PGCFVALPQAA  P L RSSK IC
Sbjct:    1 MAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTNRVTRRPLVKEASSGTGGWGWLRKGRRSGKRRKAICPPGRRGGGRTPGCFVALPQAASDPLLLRSSKEIC 117
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BLAST of mRNA_Ecto-sp13_S_contig1849.5767.1 vs. uniprot
Match: A0A835Z1Y4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1Y4_9STRA)

HSP 1 Score: 125 bits (313), Expect = 1.300e-29
Identity = 59/131 (45.04%), Postives = 91/131 (69.47%), Query Frame = 1 
Query:    4 LARIKEYFEDRGVTASNLPKVIVVHECLSVAFLALTWAICYQLQPTQ-AMFAPINKTIQNSNNAFIVRSRQSFEALIAKSEKRLSQD-WLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQ 390
            L  ++  FED+G+T ++ P    +HE L+VAFLA TWAICYQ QP+Q A+FAP+ + I+ S N +++  R+ F  ++A +E +++    L+ +G D+ R+  +LAEST+FRK  KP+TIPGKLW T K+ +
Sbjct:   10 LDHLRGVFEDQGITPADFPTAFAIHELLAVAFLASTWAICYQTQPSQSALFAPLARAIRTSENRWVMGVREGFAGVVASAEAKIAASPRLSSQGWDTARLTTALAESTIFRKSIKPITIPGKLWATWKIME 140
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BLAST of mRNA_Ecto-sp13_S_contig1849.5767.1 vs. uniprot
Match: L1JN94_GUITC (Uncharacterized protein n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JN94_GUITC)

HSP 1 Score: 75.5 bits (184), Expect = 1.290e-12
Identity = 39/123 (31.71%), Postives = 73/123 (59.35%), Query Frame = 1 
Query:   16 KEYFEDRGVTASNLPKVIVVHECLSVAFLALTWAICYQLQPTQAMFAPINKTIQNSNNAFIVRSRQSFEALIAKSEKRLSQDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKL 384
            K YF + G+T ++L K +VVHE + +++LA +W +CY +QP + + +   +  Q + + F  ++    + +      R S  +   R +D  R+ +SLAES++ R  A+PVT+P KLW+ +++
Sbjct:   24 KAYFLEHGLTPTDLAKALVVHETVGISWLAGSWGLCYAVQPIRRLGS---RYFQQNIDKFFDKAFTKLQPVF-----RWSARFALVRSMDKQRLIMSLAESSILRNAARPVTVPLKLWVAVQV 138
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BLAST of mRNA_Ecto-sp13_S_contig1849.5767.1 vs. uniprot
Match: A0A4Q6D0M9_9PROT (Uncharacterized protein n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A4Q6D0M9_9PROT)

HSP 1 Score: 66.6 bits (161), Expect = 2.060e-9
Identity = 40/119 (33.61%), Postives = 64/119 (53.78%), Query Frame = 1 
Query:   28 EDRGVTASNLPKVIVVHECLSVAFLALTWAICYQLQPTQAMFAPINKTIQNSNNAFIVRSRQSFEALIAKSEKRLSQDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKL 384
            +D+G   S++PK I +HE L +  LALTW++CY        F P++++        ++ S+    A +AKS        L      S  + +S  ES+  RKL +P+T+PGK++LT KL
Sbjct:   17 KDKGFGPSDIPKAIFIHELLGMFMLALTWSLCY--------FYPLSQSPMFVKPLAVISSK--MPAALAKS--------LEANKFLSSPIGVSYVESSCLRKLIRPLTLPGKVFLTFKL 117
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BLAST of mRNA_Ecto-sp13_S_contig1849.5767.1 vs. uniprot
Match: A0A7S3M897_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M897_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.120e-6
Identity = 35/123 (28.46%), Postives = 55/123 (44.72%), Query Frame = 1 
Query:   22 YFEDRGVTASNLPKVIVVHECLSVAFLALTWAICYQLQPTQAMFAPINKTIQNSNNAFIVRSRQSFEALIAKSEKRLSQDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQ 390
            YF+++G+   ++PK IV HE +    L LTW  CY    +   F                  +   + L +   + LS   +N       +   +  ES   RKL +P+T+PGKL+LT K+ Q
Sbjct:   54 YFQEKGLGIQDIPKAIVCHEMMGYVMLGLTWTACYHFPISDIPFL-----------------KGPMDRLTSMVPQVLSNP-VNNNPFLCSKFGKAYMESACLRKLIRPITLPGKLFLTYKMVQ 158
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BLAST of mRNA_Ecto-sp13_S_contig1849.5767.1 vs. uniprot
Match: A0A8E0RKX8_9TREM (Uncharacterized protein n=1 Tax=Fasciolopsis buski TaxID=27845 RepID=A0A8E0RKX8_9TREM)

HSP 1 Score: 53.9 bits (128), Expect = 3.090e-5
Identity = 35/112 (31.25%), Postives = 60/112 (53.57%), Query Frame = 1 
Query:   67 IVVHECLSVAFLALTWAICYQLQPTQAMFAPINKTIQNSNNAFIVRSRQSFEALIAKSEKRL--SQDWLNKRGIDSGRMAISLAESTLFRKLAKPVTIPGKLWLTLKLSQTF 396
            ++ HE L +  L   W  CY+ QP + +     +++Q            ++   +A SE++L  + D++  R  D  R+ IS AES + RKL  P+TIPGK++L++ +S  F
Sbjct:   30 VLTHEALGLGLLVGFWVGCYRYQPLKQLMHRAPRSVQ-----------VTYHRGMAWSERKLRNAPDFIKCR-TDPQRLLISGAESFVIRKLLTPITIPGKIYLSVLISGFF 129
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1849.5767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7G8A3_ECTSI6.540e-13291.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JVT6_9PHAE3.900e-6291.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z1Y4_9STRA1.300e-2945.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
L1JN94_GUITC1.290e-1231.71Uncharacterized protein n=2 Tax=Guillardia theta T... [more]
A0A4Q6D0M9_9PROT2.060e-933.61Uncharacterized protein n=1 Tax=Proteobacteria bac... [more]
A0A7S3M897_9STRA3.120e-628.46Hypothetical protein (Fragment) n=1 Tax=Spumella e... [more]
A0A8E0RKX8_9TREM3.090e-531.25Uncharacterized protein n=1 Tax=Fasciolopsis buski... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1849contigEcto-sp13_S_contig1849:110..3020 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score384.8
Seed ortholog evalue2.6e-104
Seed eggNOG ortholog2880.D7G8A3
Model size1466
Hectar predicted targeting categoryother localisation
Exons4
EggNOG OGs2D0D4@1,2SDR5@2759
Cds size636
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.639765-UTR-Ecto-sp13_S_contig1849:109..9391681462949.639765-UTR-Ecto-sp13_S_contig1849:109..939Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1849 110..939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.6509247-CDS-Ecto-sp13_S_contig1849:939..13121681462949.6509247-CDS-Ecto-sp13_S_contig1849:939..1312Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 940..1312 -
1681462949.6600573-CDS-Ecto-sp13_S_contig1849:1515..16301681462949.6600573-CDS-Ecto-sp13_S_contig1849:1515..1630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 1516..1630 -
1681462949.6690872-CDS-Ecto-sp13_S_contig1849:2099..22101681462949.6690872-CDS-Ecto-sp13_S_contig1849:2099..2210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 2100..2210 -
1681462949.6843948-CDS-Ecto-sp13_S_contig1849:2983..30201681462949.6843948-CDS-Ecto-sp13_S_contig1849:2983..3020Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1849 2984..3020 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1849.5767.1prot_Ecto-sp13_S_contig1849.5767.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1849 940..3020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1849.5767.1

>prot_Ecto-sp13_S_contig1849.5767.1 ID=prot_Ecto-sp13_S_contig1849.5767.1|Name=mRNA_Ecto-sp13_S_contig1849.5767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=212bp
MLARIKEYFEDRGVTASNLPKVIVVHECLSVAFLALTWAICYQLQPTQAM
FAPINKTIQNSNNAFIVRSRQSFEALIAKSEKRLSQDWLNKRGIDSGRMA
ISLAESTLFRKLAKPVTIPGKLWLTLKLSQTFLVGDDRDNGNESTNMGTR
RPLVKEASSETGGWGWLRKGRRSGKRRKAICPPGRRGVGRAPGCFVALPQ
AAYGPSLRSSK*
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mRNA from alignment at Ecto-sp13_S_contig1849:110..3020-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1849.5767.1 ID=mRNA_Ecto-sp13_S_contig1849.5767.1|Name=mRNA_Ecto-sp13_S_contig1849.5767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2911bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1849:110..3020- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCCCGCATCAAGGAGTATTTCGAAGACAGAGGTGCGTTAGAGGG
GCGTTGAAAAATACCCGGTGTGCGGCGTATCCTGGCCAAGACAGCAGCGT
CATGATCTCCTCAACAGGCACCGTCAGCTGAAACTTTCGGGCACGCTGCA
CCTGTACAGACTCCGCGTGCACTATATTGTTGCACAACGTAACGATGAAG
ATACAAGAGCACACCATAACGATGTAGATGTGAGAGTAAACACAACACCA
CAAAACATCACGGATAAACGGATGCTTCTGTGCGGTCCAACTAAAGGCGC
AAGCGAGTACAAGGACAACAATTTAGGCGAAATGCGCGGCGTAATCGTGA
ACAAGTGAATTGCTGCTGCTGCTGCGTGCTGCCGTGCTAGTCAGGGGGAC
ACTCTGAGTCCGCCCCCGAGATTCTGCAGGACGTACTACTGTGTGGCTGT
GATAGAGGGGGGTTGACGATTTTCGTCGCAATATTTTGCTTTCAACCCTG
TCTCTCTTCGCATGGCATTGGCGATAATTTCTCATTGGTTTTCTTAGCTT
GTGATGCGCAGCAAAGCTGGGGGGCAAGTGAACGGGCGCGTGAGCGCTGA
ATTCTCCCGCACCGGTTGGATATGGTATAGGTCTTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCCTTCTCTGGT
CTCAAATGGCTAGCTAGCGACCTTTAAGGCATGGAAATGTTAAGAACGTG
TCAATTCTTCCTCGGCCTCCTTGTGCTTCCCCTCCTGGCTGTCTCCTCTT
GTGCCTACAGGCGTTACGGCGAGCAACCTTCCCAAGGTCATCGTCGTGCA
CGAGTGCTTGAGCGTGGCCTTCCTGGCGCTTACCTGGGCTATCTGCTATC
AATTACAGCCTACCCAGGCAAGTCACCCAAGAGAGGCCGAGAGAGACGGA
CGGAAACAGACAGACAATTAGACAGACAGACAGACAGAAAGACATACAGA
CAGAAGGAACTACAGAGAAATATGCCCCACTGGCAGCACCTTCGATCTCA
AAAACCGTGCATGGCGTCCCCAACCATCGTTTGTCCTAGCTGTATGTGCC
ATGTAAATTACCGCACTCTCTGAGCACTCCTTAAAGAAGAGTCATTTCTC
TCTGGGCCGTTGTTCCTACCTTCCGGTGACTCACCCGTGCCCGCCGTCCC
CCCTCTCCCGCCGCTCATTGTGAAAGTGCTCGTCATCATAGCTATGCCCA
GGGACGGTGCACCGTTTAGGTGAGGTACGTGTGCCCAATTGTGAGAGGAC
AGTTCACAGATCAGGCAACGGGAACCAACAGACACGTGCCCTTACCCCCT
TATTTCACCTCTATTCACAATCAATCAACGCAGGGCCCAGTGTTCGCGCC
CATCAACAAAACAATCCAAAACAGCAACAACGCCTTCATCGTCCGGAGTC
GCCAGTCCTTCGAGGCCCTCATCGCCAAGTCGGAGAAGCGGCTTAGTCAA
GATTGGTGAGAGATACAAGCTTGGTTTTTGGTACAGCAGGCGTTGCTGCT
ACTGCTGTTTCGTGTACTGCTTGTAGGAACATTTGTGCTTCCTGTATGTG
CACTTCCGTTGTTCTCTTCACGTTCGCTTGTTTGCTGTCCGTGTGCGTCG
CTTTGTGCGCCTTGTCTCTTTTTTGTCGACCTTTTCTTCACCTCTGCCTT
ACAATGAGGCTAAACAAGAGGGGAATCGACTCCGGCAGAATGGCGATCTC
CCTAGCGGAGTCGACCCTGTTCCGAAAGCTCGCCAAGCCGGTCACCATCC
CGGGAAAGCTCTGGCTCACACTCAAGCTCTCGCAAACATTCCTGGTCGGC
GACGACCGCGACAACGGCAATGAAAGCACCAACATGGGTACCAGAAGGCC
GTTGGTAAAAGAAGCATCTTCGGAGACCGGAGGATGGGGGTGGCTGAGGA
AGGGAAGACGATCTGGAAAGAGAAGGAAAGCGATTTGCCCCCCTGGGAGG
AGGGGGGTTGGGAGGGCGCCCGGCTGCTTTGTTGCCTTACCGCAGGCCGC
TTATGGCCCGTCGTTGCGATCCTCGAAGTAGATTTGTTGATAGAAAGCTA
ACGCTCGGGCACACGCTGCAGAGCTCCCAAAGCTTGCCGGGTCCCAGGCT
AGTGATGGCTCGCTCTTTTTTTGTCCTTTGTGATATTCCACATTTCCCGT
AGAGCAGTGGAGGCGGCGGTATATTGTATCGCAGTGTAGTGCCCGACGAA
ATCACCACGTTATATCGGGGCCCTTGCTTTGGGGGAGGGTCCACGAAAAG
AAATTAGAAGTAGGCTACGTTGCTGTGCCAATGTTTTTTTTCCGCGGTAC
ACGGGGAATCGCGTTACTCGGGACCGCGATATATTGGGGACACATTGTAG
TCGGTTGTTTGTTGTCCTCTTCCTACCTCGCTTTGCGCAATTAGCGGGGC
CGTTTGGAGTATTTTGTGTGCAACTGCGTAGAAAGAGCCTGTATGTTTGC
CAACGCATACAACGTCGGTTGCTAACACATGACGGAGAAGATCACAGGAG
TAACGTGTTCGATTACGCTATCTCTGTTGACACGTAAGGCTCTGTGTTCG
AAGGGTGTGTTTGTGTTGAAGTTTTCAGCACTAACGTGATGCCGTCCGAT
TGTTTGCGTGGGTGTTAAGCCCACTGTTGTTGCCTTGATTTCTTTTTTGC
ACATGTTTCGAGTATGTTTTGTAGGCCCCCTCGGGATCACAAAGAGAGGT
AGAATGACACACCAGAGTTGTTGCCACCTGTCTTATTGCGTGCTTGCCGT
TGTACATGTCTCGACAAGGACTCAGCCTTTCCATTCCGCTTTATGTGGCT
GAGATCATTTGAACGGGGAGGTTTCCTCCTCCTCGAGATAATAGCTCTTC
CAAAATCGTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1849:110..3020-

>mRNA_Ecto-sp13_S_contig1849.5767.1 ID=mRNA_Ecto-sp13_S_contig1849.5767.1|Name=mRNA_Ecto-sp13_S_contig1849.5767.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=636bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1849:110..3020- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGGCCCGCATCAAGGAGTATTTCGAAGACAGAGGCGTTACGGCGAG
CAACCTTCCCAAGGTCATCGTCGTGCACGAGTGCTTGAGCGTGGCCTTCC
TGGCGCTTACCTGGGCTATCTGCTATCAATTACAGCCTACCCAGGCAATG
TTCGCGCCCATCAACAAAACAATCCAAAACAGCAACAACGCCTTCATCGT
CCGGAGTCGCCAGTCCTTCGAGGCCCTCATCGCCAAGTCGGAGAAGCGGC
TTAGTCAAGATTGGCTAAACAAGAGGGGAATCGACTCCGGCAGAATGGCG
ATCTCCCTAGCGGAGTCGACCCTGTTCCGAAAGCTCGCCAAGCCGGTCAC
CATCCCGGGAAAGCTCTGGCTCACACTCAAGCTCTCGCAAACATTCCTGG
TCGGCGACGACCGCGACAACGGCAATGAAAGCACCAACATGGGTACCAGA
AGGCCGTTGGTAAAAGAAGCATCTTCGGAGACCGGAGGATGGGGGTGGCT
GAGGAAGGGAAGACGATCTGGAAAGAGAAGGAAAGCGATTTGCCCCCCTG
GGAGGAGGGGGGTTGGGAGGGCGCCCGGCTGCTTTGTTGCCTTACCGCAG
GCCGCTTATGGCCCGTCGTTGCGATCCTCGAAGTAG
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