mRNA_Ecto-sp13_S_contig18481.5762.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18481.5762.1
Unique NamemRNA_Ecto-sp13_S_contig18481.5762.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18481.5762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18481contigEcto-sp13_S_contig18481:523..1563 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size815
Hectar predicted targeting categoryother localisation
Exons2
Cds size489
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.3087246-UTR-Ecto-sp13_S_contig18481:522..7761681462949.3087246-UTR-Ecto-sp13_S_contig18481:522..776Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18481 523..776 -
1681462949.34021-UTR-Ecto-sp13_S_contig18481:1491..15631681462949.34021-UTR-Ecto-sp13_S_contig18481:1491..1563Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18481 1492..1563 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.3188224-CDS-Ecto-sp13_S_contig18481:776..10851681462949.3188224-CDS-Ecto-sp13_S_contig18481:776..1085Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18481 777..1085 -
1681462949.3277016-CDS-Ecto-sp13_S_contig18481:1311..14911681462949.3277016-CDS-Ecto-sp13_S_contig18481:1311..1491Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18481 1312..1491 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18481.5762.1prot_Ecto-sp13_S_contig18481.5762.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18481 777..1491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18481.5762.1

>prot_Ecto-sp13_S_contig18481.5762.1 ID=prot_Ecto-sp13_S_contig18481.5762.1|Name=mRNA_Ecto-sp13_S_contig18481.5762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
MRPYPHAGTGGLGSTCLSNAPPVHSPVLCEHSKDLHHFGFERDGRLAREK
RKRPFDRNQERRRPTHRTIFTSILSVVKKKHILMSAVESDLLVNRGNELL
RLKPRSARGNLMELEHRRRPRSEERPDTTKEEKPPSSRTSFMANTIDERL
PWNVAVCTNGGT*
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mRNA from alignment at Ecto-sp13_S_contig18481:523..1563-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18481.5762.1 ID=mRNA_Ecto-sp13_S_contig18481.5762.1|Name=mRNA_Ecto-sp13_S_contig18481.5762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1041bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18481:523..1563- (Ectocarpus species13 EcNAP12_S_4_19m)
GTGTGGATCCGCTCGGGTTATTCGTCGCGCGCTAGTGCGTGTGGGTTGTG
TAGAGAAGGTCGGGGCATTCCGATGCGTCCATATCCGCATGCGGGGACTG
GGGGTCTGGGCTCAACATGTTTGTCAAATGCACCCCCTGTGCACAGCCCC
GTTTTATGTGAACACAGCAAGGACTTGCACCATTTTGGTTTTGAACGTGA
TGGACGTTTGGCAAGGGAAAAGAGGAAAAGGCCATTTGACCGAAACCAAG
AAGTAGCCCAAGAGCGGGGTATGATATGAGAGCAAGCAAAGGGGTAGGGT
GAACAAAGGCCAGCTCAAACCCTTGCGGTCTTGCCCTTGCTCCAAGTCGT
GCGTTGTGCGCACCTTAGTATTCAACAACGCTACAATTGTTTTTGTCTAT
CACATTGGTGGGAGTGGGTGCGAGTAGAAATTGTGCCGCTTACACCACCA
CCGGGCGCCCTGGTGGTGTAGTGGCTAGCGTCGTAGACCTACTCATAGAA
CAATCTTCACTTCGATTCTCTCTGTCGTGAAGAAAAAACATATTCTGATG
TCTGCGGTGGAAAGCGATCTTCTTGTAAATCGTGGGAACGAGCTGCTTCG
GTTGAAGCCTCGTTCTGCAAGAGGCAATCTGATGGAGTTGGAACACAGAC
GAAGACCCCGGTCGGAAGAGCGACCAGACACAACGAAAGAGGAAAAACCA
CCATCGTCGCGAACGTCATTCATGGCGAACACGATTGATGAACGCCTACC
ATGGAATGTAGCAGTGTGCACGAACGGCGGCACGTAGTTTGCGTTCGTCT
CGCCTATTCTGGTGCCACTGTTCACCTGTCGGTGCCTGTGTTTGGCGTAC
CAGGCGGGTTTAAGACAGAACATCCCGTAGCAGCAATGTTTCTCGTTCGT
GTCCCTGGGTTCCAACAACTACTGCTGTAGGACAACACATCTTGGTTGTC
TTTTCTTTGCCCTACCCTGCCTCCTGTTGTGGCGGTGTTATCGCGGAAAT
ATCACAGCTTAATGTATTACCGTGCCTTTCCCTCGTCGACG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18481:523..1563-

>mRNA_Ecto-sp13_S_contig18481.5762.1 ID=mRNA_Ecto-sp13_S_contig18481.5762.1|Name=mRNA_Ecto-sp13_S_contig18481.5762.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18481:523..1563- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGTCCATATCCGCATGCGGGGACTGGGGGTCTGGGCTCAACATGTTT
GTCAAATGCACCCCCTGTGCACAGCCCCGTTTTATGTGAACACAGCAAGG
ACTTGCACCATTTTGGTTTTGAACGTGATGGACGTTTGGCAAGGGAAAAG
AGGAAAAGGCCATTTGACCGAAACCAAGAACGTCGTAGACCTACTCATAG
AACAATCTTCACTTCGATTCTCTCTGTCGTGAAGAAAAAACATATTCTGA
TGTCTGCGGTGGAAAGCGATCTTCTTGTAAATCGTGGGAACGAGCTGCTT
CGGTTGAAGCCTCGTTCTGCAAGAGGCAATCTGATGGAGTTGGAACACAG
ACGAAGACCCCGGTCGGAAGAGCGACCAGACACAACGAAAGAGGAAAAAC
CACCATCGTCGCGAACGTCATTCATGGCGAACACGATTGATGAACGCCTA
CCATGGAATGTAGCAGTGTGCACGAACGGCGGCACGTAG
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