mRNA_Ecto-sp13_S_contig18473.5760.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18473.5760.1
Unique NamemRNA_Ecto-sp13_S_contig18473.5760.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: A0A6H5KV97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV97_9PHAE)

HSP 1 Score: 486 bits (1252), Expect = 1.770e-167
Identity = 269/325 (82.77%), Postives = 279/325 (85.85%), Query Frame = 1
Query:  175 MRWSTTEARRRPRISALTPAGARSLPATLMAWAASPAAGSAATRCSN-RRRLATARAASRTTTRLPVSAHARRRHQAIPPLSSAETEAPQAAAGQSLFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADDLPSTRYE 1146
            MR S  E RR+PRISALTP G RSL A   AWAASPAAGSAA RCSN RRR ATARAASRTTTRLP +AHARRR QAIPPLSSAETEAP+AAAGQSLFIFGVGYVATAVALTFL KGWTVHGTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLSALASATC+LSTVPPALQSGADPVLVAHEAEL+WARSKGNLRWVGYLSSTG    +G  W                 L+ ++   R  ERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHV DIVGV+EASIERPEPGMVLNVADDLPSTRYE
Sbjct:    1 MRCSRPETRRKPRISALTPTGVRSLSAAQTAWAASPAAGSAAIRCSNNRRRQATARAASRTTTRLPANAHARRRRQAIPPLSSAETEAPEAAAGQSLFIFGVGYVATAVALTFLRKGWTVHGTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLSALASATCVLSTVPPALQSGADPVLVAHEAELQWARSKGNLRWVGYLSSTG----KGTMW-----------------LRMDKRACR-QERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVFDIVGVVEASIERPEPGMVLNVADDLPSTRYE 303          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: D7FKG5_ECTSI (NAD-dependent epimerase/dehydratase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG5_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 1.570e-113
Identity = 169/176 (96.02%), Postives = 173/176 (98.30%), Query Frame = 1
Query:  619 MMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADDLPSTRYE 1146
            MMQPEPLS LASATC+LSTVPPALQSGADPVLVAHEAEL+WARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRL+ERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGV+EASIE P PGMVLNVADDLPSTRYE
Sbjct:    1 MMQPEPLSVLASATCVLSTVPPALQSGADPVLVAHEAELQWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLHERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVVEASIELPAPGMVLNVADDLPSTRYE 176          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: D7FKG4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKG4_ECTSI)

HSP 1 Score: 286 bits (732), Expect = 5.350e-93
Identity = 168/201 (83.58%), Postives = 177/201 (88.06%), Query Frame = 1
Query:    1 MRRPSSTSSVFLLWASLKGVDAGRSSLTARTMAASPPGAATSGSTSTTFCSSSGHSSRMRWSTTEARRRPRISALTPAGARSLPATLMAWAASPAAGSAATRCSN-RRRLATARAASRTTTRLPVSAHARRRHQAIPPLSSAETEAPQAAAGQSLFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLGDQGIKAFIF 600
            MRRPSSTSSVFLLWASL+GVDAGRSSL A  MAASPPGAATSG+T+TTFCSSSGH SRMRWS  E R++PRISALTP GARSL A   AWA SPAAGSAATRCSN RRRLA  RAAS TTTRLP +AHARRR QAIPPLSSA+TE P+AAAGQSLFIFGVGYVATAVALTFL KGWTVHGTCTDPRKVKSLGDQGIK  + 
Sbjct:    1 MRRPSSTSSVFLLWASLQGVDAGRSSLIAGRMAASPPGAATSGATATTFCSSSGHGSRMRWSRPEERKKPRISALTP-GARSLSAAQTAWATSPAAGSAATRCSNNRRRLA--RAASHTTTRLPANAHARRRRQAIPPLSSADTEDPEAAAGQSLFIFGVGYVATAVALTFLRKGWTVHGTCTDPRKVKSLGDQGIKRELL 198          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: A0A7S0SU05_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SU05_9STRA)

HSP 1 Score: 198 bits (504), Expect = 2.920e-57
Identity = 94/204 (46.08%), Postives = 137/204 (67.16%), Query Frame = 1
Query:  535 GTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADDLPSTRYE 1146
            GT T   K+K   + GI A++FD+ SGPM+  + L+ L +A+ +L+T+PP  ++G D VL  H  ++  A  KG+ +W+GY+SSTG+YGD  G WV E     P   +T AR KA+ +W  L+ R+ LP+H+FR AGIYGP RS LD + + NGD +  G+DD T++SR H+ D+V VL AS+  P  G+ +NVADDLP+TR++
Sbjct:    1 GTSTSVSKIKHYKNNGINAYLFDNLSGPMIDNDALNKLYNASHVLNTIPPDQENGEDYVLTCHGNDITQAVIKGSTKWIGYISSTGIYGDCKGDWVNENSPINPENRKTLARSKADNAWWTLHTRNSLPIHIFRCAGIYGPNRSILDILKKSNGDFKACGADDTTIISRIHIKDLVNVLIASMILPSNGLKVNVADDLPATRFD 204          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: A0A2D6JW02_9PROT (NAD(P)-dependent oxidoreductase n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6JW02_9PROT)

HSP 1 Score: 191 bits (485), Expect = 1.170e-54
Identity = 110/225 (48.89%), Postives = 137/225 (60.89%), Query Frame = 1
Query:  460 LFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADDLPS 1134
            LF FG+GY A  +A   L +GW V GTC  P +   L D GIKA +FD    P+      SAL+  T +LS+VPP      DPVL  H ++++  +    + WVGYLSSTGVYGD GG  VTE+    P++ R + R +AE +WL L    GLPVHVFRLAGIYGPGRSALD V    G  R+     G M SR H+ DI  VL AS++RP+PG V NV DD P+
Sbjct:   10 LFCFGLGYSAGRLARLLLARGWAVAGTCQSPDRQAELADWGIKALVFDP-ERPLADAP--SALSGVTHLLSSVPP--DENGDPVLARHGSDIEAMKG---VSWVGYLSSTGVYGDTGGNTVTEDSAVNPSSDRGRRRAEAEAAWLALENDQGLPVHVFRLAGIYGPGRSALDQVRAGRGK-RI--DKPGHMFSRIHIDDIAQVLRASMDRPDPGAVYNVCDDEPA 223          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: A0A1Y6BAE2_9HYPH (Nucleoside-diphosphate-sugar epimerase n=1 Tax=Tistlia consotensis USBA 355 TaxID=560819 RepID=A0A1Y6BAE2_9HYPH)

HSP 1 Score: 189 bits (480), Expect = 6.860e-54
Identity = 109/222 (49.10%), Postives = 139/222 (62.61%), Query Frame = 1
Query:  460 LFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADD 1125
            LF FG+G+ A A+A   L  GW V GT  DP K ++L  +GI+AF+F +   P+  PE  +ALA  + +L++ PP  +   DPVL AH A +    +   L+WVGYLS+TGVYG+R GGWV E     P+  R + R+ AE +WL L+ R GLPVH+FRLAGIYGPGRS LD+VA   G  R      G + SR HV DI  VLEAS+ RP PG   NV DD
Sbjct:    8 LFCFGLGFSARALARRRLADGWRVAGTTRDPAKAEALAAEGIEAFVFAN-GRPLEDPE--AALAGTSHLLASAPPDAEG--DPVLAAHGAAIA---ALPGLQWVGYLSTTGVYGNRAGGWVDEASALTPSGERGRRRVAAEAAWLELHRRHGLPVHLFRLAGIYGPGRSQLDSVA--GGRARRI-VKPGQVFSRIHVEDIATVLEASMARPNPGAAYNVCDD 218          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: A0A369TAJ2_9PROT (SDR family NAD(P)-dependent oxidoreductase n=1 Tax=Ferruginivarius sediminum TaxID=2661937 RepID=A0A369TAJ2_9PROT)

HSP 1 Score: 187 bits (475), Expect = 3.200e-53
Identity = 111/229 (48.47%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  460 LFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADDLPSTRYE 1146
            LF FG+GY A  +A   L +GW V GT  D  K   L   G++A +FD    P+   +  +ALA  T +LS+VPP  +   DPVL  H  ++  A   G L W GYLS+TGVYG+R GGWV EE E  P + R + R+ AE +WLRL+   G+PVHVFRLAGIYGPGRS LDAV R     R+     G + SR HV DI  VL+AS+ RP PG V NV DD P+   E
Sbjct:    6 LFCFGLGYSARRLADRLLAEGWRVAGTTRDEAKAGELRAAGVEACVFDRGQ-PLA--DAATALAGTTHLLSSVPPNREG--DPVLDHHAGDI--AALAGRLAWAGYLSTTGVYGNREGGWVDEESELHPTSARAERRVAAEHAWLRLHAGQGIPVHVFRLAGIYGPGRSPLDAV-RQGRAKRI--DKPGQVFSRIHVEDIATVLQASMARPNPGRVYNVCDDEPAAPAE 224          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: A0A286GUB3_9PROT (Nucleoside-diphosphate-sugar epimerase n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GUB3_9PROT)

HSP 1 Score: 186 bits (471), Expect = 1.260e-52
Identity = 108/225 (48.00%), Postives = 133/225 (59.11%), Query Frame = 1
Query:  460 LFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADDLPS 1134
            LF+FG+G+  T +A  FL  GW V GT     K   L  QGI+A+ FD        P P  ALA AT ++ +VPP      DPV   H A+L    S   LRW+GYLS+TGVYGDR GGWV E     P   R++ R++AE +WL L    GLPVHVFRLAGIYGPGRSA+D V   +G  R     +  +  R HV DI  VL+AS+ RP PG + NVADD P+
Sbjct:    7 LFVFGLGFSGTVLARRFLAAGWRVAGTSRSAEKRDRLAAQGIEAYAFD-----RDHPLPAEALAGATHVVVSVPP--DEAGDPVAAVHGADLAALPS---LRWLGYLSTTGVYGDRRGGWVDETTPVAPDVGRSERRVRAEEAWLALARDHGLPVHVFRLAGIYGPGRSAIDMV--RSGRARRV-IKENQVFCRIHVEDIATVLQASMARPRPGAIYNVADDEPA 218          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: A0A168SBK3_9CYAN (NAD(P)-dependent oxidoreductase n=1 Tax=Leptolyngbya valderiana BDU 20041 TaxID=322866 RepID=A0A168SBK3_9CYAN)

HSP 1 Score: 186 bits (472), Expect = 2.050e-52
Identity = 105/223 (47.09%), Postives = 138/223 (61.88%), Query Frame = 1
Query:  460 LFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLG-DQGIKAFIFDDWSGPMMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADD 1125
            LF+FG+GY A  +A    ++GW + GT    +K  +L   +G +AF+FD  + P+   +P +ALA  T +LS+VPP  +   DPVL AH  ++      G L+W+GYLS+TGVYGDR GGWV E     P   R + R+ AER WLRL++  GLPVH+FRLAGIYGPGRS   A+ R     R+     G + SR HV+DI  VL ASI+RP PG   NV DD
Sbjct:   22 LFVFGLGYSARQLAADLSVQGWEIAGTTRSAQKASALAASEGAEAFVFDRGT-PLS--DPATALAGTTHLLSSVPPDAEG--DPVLDAHFDDIVALAHGGELQWIGYLSTTGVYGDRAGGWVDETSALEPTGERGRRRVAAERHWLRLWQEHGLPVHLFRLAGIYGPGRSQFAAL-RAGRSRRI--DKPGQVFSRIHVADIAQVLAASIDRPNPGAAYNVCDD 236          
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Match: A0A2H6AT94_9BACT (Uncharacterized protein n=1 Tax=bacterium HR39 TaxID=2035434 RepID=A0A2H6AT94_9BACT)

HSP 1 Score: 185 bits (470), Expect = 3.260e-52
Identity = 109/228 (47.81%), Postives = 136/228 (59.65%), Query Frame = 1
Query:  460 LFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLGDQGIKAFIFDDWSGPMMQPEPLS----ALASATCILSTVPPALQSGADPVLVAHEAELKWARSKGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRLYERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHVSDIVGVLEASIERPEPGMVLNVADDLP 1131
            LF FG GYVA  +A   L +GWTV GT  DP K + L   GI+ F+F        +  PL     AL+  T +L ++PP      DPVL  H   L   R+  +LRWVG+L +T VYGDR GGWV+EEDEP P   R K RL+AER+WL      GLPVH+FRLAGIYGPGR+A+ ++   +   R+     G +  R HV DIV VL AS+ RP PG + NVADD P
Sbjct:   20 LFCFGCGYVAQHLAAALLAEGWTVRGTTRDPAKAEELRAAGIEPFLF-------ARGRPLGDSGRALSGVTHLLVSIPP--DEAGDPVLDEHGEHL---RALSSLRWVGWLGTTAVYGDRQGGWVSEEDEPRPGLERAKWRLRAERAWLG----SGLPVHIFRLAGIYGPGRNAIRSLLDGHAH-RIV--KPGQVFGRIHVDDIVAVLRASMARPHPGRIYNVADDEP 228          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18473.5760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KV97_9PHAE1.770e-16782.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FKG5_ECTSI1.570e-11396.02NAD-dependent epimerase/dehydratase n=1 Tax=Ectoca... [more]
D7FKG4_ECTSI5.350e-9383.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S0SU05_9STRA2.920e-5746.08Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A2D6JW02_9PROT1.170e-5448.89NAD(P)-dependent oxidoreductase n=1 Tax=Rhodospiri... [more]
A0A1Y6BAE2_9HYPH6.860e-5449.10Nucleoside-diphosphate-sugar epimerase n=1 Tax=Tis... [more]
A0A369TAJ2_9PROT3.200e-5348.47SDR family NAD(P)-dependent oxidoreductase n=1 Tax... [more]
A0A286GUB3_9PROT1.260e-5248.00Nucleoside-diphosphate-sugar epimerase n=1 Tax=Cae... [more]
A0A168SBK3_9CYAN2.050e-5247.09NAD(P)-dependent oxidoreductase n=1 Tax=Leptolyngb... [more]
A0A2H6AT94_9BACT3.260e-5247.81Uncharacterized protein n=1 Tax=bacterium HR39 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18473contigEcto-sp13_S_contig18473:3..3349 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score345.9
Seed ortholog evalue2.4e-92
Seed eggNOG ortholog2880.D7FKG5
Model size1146
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0044424,GO:0044444,GO:0044464
Exons6
EggNOG free text desc.dTDP-glucose 4,6-dehydratase activity
EggNOG OGsCOG1088@1,KOG0747@2759
Ec32 ortholog descriptionNAD-dependent epimerase/dehydratase
Ec32 orthologEc-12_002160.1
Cds size1146
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18473.5760.1prot_Ecto-sp13_S_contig18473.5760.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18473 3..3349 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462949.0838776-CDS-Ecto-sp13_S_contig18473:2..5901681462949.0838776-CDS-Ecto-sp13_S_contig18473:2..590Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18473 3..590 +
1681462949.0979998-CDS-Ecto-sp13_S_contig18473:1015..11191681462949.0979998-CDS-Ecto-sp13_S_contig18473:1015..1119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18473 1016..1119 +
1681462949.1074893-CDS-Ecto-sp13_S_contig18473:1371..14691681462949.1074893-CDS-Ecto-sp13_S_contig18473:1371..1469Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18473 1372..1469 +
1681462949.1181362-CDS-Ecto-sp13_S_contig18473:2056..21691681462949.1181362-CDS-Ecto-sp13_S_contig18473:2056..2169Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18473 2057..2169 +
1681462949.1299646-CDS-Ecto-sp13_S_contig18473:2671..27541681462949.1299646-CDS-Ecto-sp13_S_contig18473:2671..2754Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18473 2672..2754 +
1681462949.1394265-CDS-Ecto-sp13_S_contig18473:3189..33491681462949.1394265-CDS-Ecto-sp13_S_contig18473:3189..3349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18473 3190..3349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18473.5760.1

>prot_Ecto-sp13_S_contig18473.5760.1 ID=prot_Ecto-sp13_S_contig18473.5760.1|Name=mRNA_Ecto-sp13_S_contig18473.5760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=382bp
MRRPSSTSSVFLLWASLKGVDAGRSSLTARTMAASPPGAATSGSTSTTFC
SSSGHSSRMRWSTTEARRRPRISALTPAGARSLPATLMAWAASPAAGSAA
TRCSNRRRLATARAASRTTTRLPVSAHARRRHQAIPPLSSAETEAPQAAA
GQSLFIFGVGYVATAVALTFLMKGWTVHGTCTDPRKVKSLGDQGIKAFIF
DDWSGPMMQPEPLSALASATCILSTVPPALQSGADPVLVAHEAELKWARS
KGNLRWVGYLSSTGVYGDRGGGWVTEEDEPWPAAPRTKARLKAERSWLRL
YERDGLPVHVFRLAGIYGPGRSALDAVARHNGDIRLAGSDDGTMVSRTHV
SDIVGVLEASIERPEPGMVLNVADDLPSTRYE
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mRNA from alignment at Ecto-sp13_S_contig18473:3..3349+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18473.5760.1 ID=mRNA_Ecto-sp13_S_contig18473.5760.1|Name=mRNA_Ecto-sp13_S_contig18473.5760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3347bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18473:3..3349+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCGTCCGTCTTCAACGTCGTCCGTTTTTCTTCTATGGGCGTCGTT GAAGGGCGTGGACGCGGGTCGTTCCTCGCTCACCGCCCGGACGATGGCAG CATCTCCGCCTGGTGCTGCAACAAGCGGCTCAACTTCGACGACGTTTTGT TCCAGCAGCGGCCACAGCAGCAGGATGCGTTGGTCTACGACCGAGGCAAG AAGAAGACCTCGAATAAGCGCGCTAACGCCTGCTGGTGCTCGAAGCCTGC CCGCAACGCTGATGGCGTGGGCAGCATCTCCTGCGGCGGGAAGTGCCGCC ACGCGTTGCTCGAACAGACGTCGTCTTGCTACGGCACGAGCGGCGTCTCG CACAACGACGCGCTTGCCTGTGAGCGCCCACGCACGCCGACGGCACCAGG CCATCCCGCCGCTATCTTCGGCCGAGACGGAAGCCCCCCAGGCTGCTGCC GGTCAGTCGTTGTTCATCTTCGGCGTGGGTTACGTCGCCACGGCTGTTGC CCTGACCTTTCTGATGAAGGGCTGGACCGTACACGGCACCTGCACCGACC CGAGAAAGGTCAAGTCGCTGGGAGATCAGGGGATAAAGGTACAATATGTG CGGTCGGACTCCTTGTACTGACGCATGCTGCCATGGACATCAATACAAGC CGCTGTTGTGATTGCACTGCACGAGCTACTGGTCGTTGCGTGTCCGGTTT TCTGCGCGGCTTAGAGCCCGCGAACACGTGTTTACCTACGACGGTGTTGT TGCAGCCTATCGAGCTCCTTATGTGCGGCGCTCTGCATCGTGGCAGCAGA CGAGCATCGAGCCACGCGGCGGCAAGATATGTTGGCATCTTCAGCGGTGC TTAGAGAGTAGCAACGGCAACGCACAAGTCATTTGCTAGATGCGCTTCGC GTGTGCTGATGTCGTTCGATTCTCAACATGGGTCGGCCAATGACTACGTC TGAGATCGACTAGTCTTCTCTTCGTTGGCCTTATCGTGGTGTGCTTTGAG ACGCGTTCGTCAGGCGTTCATTTTTGACGACTGGAGCGGGCCGATGATGC AGCCGGAGCCTTTGTCGGCACTCGCGAGCGCCACCTGCATCCTGAGCACA GTGCCACCAGCCCTGCAGTGAGCCCGCCTTAGATTTGTGGTACACGTTAG GCCGCGCACTGCGCTTCTTCTTCATATGTACGGATCGTGGAGCCCGCGCC TTGGTTTGTTGAAAAGTATCACGCCGGCTCGACGACTTTTCTTTTTTGGT ACGAGCCATGGCGGGAGGTTTCGCAAGCGCTTTCGGCAGTAGTGAGTCGG TACCAGCTGCCTTGTGACGCGCCCTCACCGGCGTCAACGACACGTATGCC CCGGTTTTACTCTGAGCAGGTCGGGTGCTGACCCCGTCCTCGTGGCGCAT GAGGCGGAGCTGAAGTGGGCCCGGAGCAAGGGTAACCTTCGATGGGTGGG CTATCTCTCTTCCACGGGTAAGAGTACCATTTGGTTCATTTTCCTTCCGA CTTCCTTCCATTGACGCAGAATGGTGTACCCTTTTGGAGGTGGTTGGCTT GTGACCACGGAAGACGTCCGCGTCAGTTGGACCAGTGTAGTGCTGAGCGG AGACCGGGAGACAAACAACAACAACAACAACAACAACAACAACAAGTTCC ATGAAGGTCGCACAGTATCTGAAGAGGGTGGGATGGCGTAGCTTCCTTAG CAAAAGGGGGGGTACATTGAGAAGATGGATTGCCCGAGGGAGTTGAGTCG TCTGCTCGTGCGTTTGAACCCACTGTTGCGATCTCGACGGTGACGACTTT GCGACAACGATGGACTTGGGGGGTAACAACCGCACAGGTTGACAATGGGC AAGAGAGCCTGCCGGCGGGTTGGTTTCTTGGGTGGCATACCTCCCAAAAC CCTGAAGCTGAAAACCCATAAATCTCCTCAAATGTCGCAACCCACAGCAC CTGTAGTGCTTCCACGTTGTGCTACAACAGCAGCTACATGACAGTGGGTA AGGCGTAGTCGTGCCATGACGTTCCGGCGCGCGCTTCTCGCGGCCTTGTT CCAGGGGTGTACGGGGACCGGGGTGGCGGTTGGGTGACGGAGGAGGATGA GCCATGGCCTGCAGCACCGAGGACGAAGGCGAGGCTCAAGGCGGAGAGGT CCTGGCTTCGGCTTTACGTGAGAGAAAGAGAGAGGGTTAGGGAACATGTG ATCGTGTCAGGGTGCTGGAGAAATGGGTGCATACATTTCGCAGCGAGACG CACGGTAAAGTGTGTATTAGGGAGGGAAATTAGACAAAGGATGACAACAG AAGGCCAAAGCAAAGGGCAGAAATACAGCTCAAGTCGAGTCTCGTTGGCG GCAACTGTCATAGCTCACACGATCGTCTCGTAGCCCAACATGAGCAGTGA ACTGGAATGGACGCAGTGCCCCGAAGGAGAGGCTTGTCGGTTGACTGCTA TTAATAGTTTCTTCCTAAGGCCAGACATCCATCCCTTGGATGCAAGTCGG GAGGGCATAATCTAAGCGGGAAGCAGCGTACACGGTAATTCGAGGGGCAC ACAGCAGTTGATTGTGTTGCCTTGGTCTTGAAGTGGGCTTTTCGTGTAAC ATCCGCTATTCCTGCACACTGCCTGTTTGGCCGTCTCGAACCCCCGCCCT GCTCGCTGTGCTACGGTAGGAGCGCGACGGTCTACCCGTGCATGTCTTTC GTCTGGCCGGGATCTACGGTCCCGGAAGAAGCGCTCTGGATGCTGTCGCG AGGTGCGTGGACGCGTCGGGTGCCCGTCGGCTGGTGTACTCGATTCGCCT TCATTGGAGTTAGATTGAGGTGACGGCTGGTCAGCTGTGAAGCGAGCTGG CAGGTTCGGCATTGGCGCATTAAACAACACACCGTGTACACCCGGATTGA GAAGGGTTGCTGTGAGTTTCTGTTCACGTTCGGTTCGTCTTCTGTACGGT CGTGTAACCTCCCGGGTAGAAGTCTACCGTGGCGAATGTAGCTCACGCCT GACAGCCACCTGCGTCTTGCTCAGTACAGTACACCTACTTATCTCTTCCG TAGTTGTTGTAGCCCGGCTTGAGCATGTTCCATGGTGCAAGCGGTCAGAC GAGTCCATTACACCTGCTCCCCTCTCCTCAATCGTTATTTCCCTCTCAAG ACAGATATTGAACGCCCTGCTTGAACACGTTGCACAGGCATAACGGGGAC ATTCGACTGGCCGGCTCTGACGACGGGACGATGGTTTCTCGGACGCACGT ATCCGACATTGTTGGGGTGTTGGAGGCCTCGATCGAGCGGCCCGAACCTG GCATGGTGCTCAACGTCGCCGACGATCTCCCGTCTACGAGATACGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18473:3..3349+

>mRNA_Ecto-sp13_S_contig18473.5760.1 ID=mRNA_Ecto-sp13_S_contig18473.5760.1|Name=mRNA_Ecto-sp13_S_contig18473.5760.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1146bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18473:3..3349+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGCGTCCGTCTTCAACGTCGTCCGTTTTTCTTCTATGGGCGTCGTT
GAAGGGCGTGGACGCGGGTCGTTCCTCGCTCACCGCCCGGACGATGGCAG
CATCTCCGCCTGGTGCTGCAACAAGCGGCTCAACTTCGACGACGTTTTGT
TCCAGCAGCGGCCACAGCAGCAGGATGCGTTGGTCTACGACCGAGGCAAG
AAGAAGACCTCGAATAAGCGCGCTAACGCCTGCTGGTGCTCGAAGCCTGC
CCGCAACGCTGATGGCGTGGGCAGCATCTCCTGCGGCGGGAAGTGCCGCC
ACGCGTTGCTCGAACAGACGTCGTCTTGCTACGGCACGAGCGGCGTCTCG
CACAACGACGCGCTTGCCTGTGAGCGCCCACGCACGCCGACGGCACCAGG
CCATCCCGCCGCTATCTTCGGCCGAGACGGAAGCCCCCCAGGCTGCTGCC
GGTCAGTCGTTGTTCATCTTCGGCGTGGGTTACGTCGCCACGGCTGTTGC
CCTGACCTTTCTGATGAAGGGCTGGACCGTACACGGCACCTGCACCGACC
CGAGAAAGGTCAAGTCGCTGGGAGATCAGGGGATAAAGGCGTTCATTTTT
GACGACTGGAGCGGGCCGATGATGCAGCCGGAGCCTTTGTCGGCACTCGC
GAGCGCCACCTGCATCCTGAGCACAGTGCCACCAGCCCTGCAGTCGGGTG
CTGACCCCGTCCTCGTGGCGCATGAGGCGGAGCTGAAGTGGGCCCGGAGC
AAGGGTAACCTTCGATGGGTGGGCTATCTCTCTTCCACGGGGGTGTACGG
GGACCGGGGTGGCGGTTGGGTGACGGAGGAGGATGAGCCATGGCCTGCAG
CACCGAGGACGAAGGCGAGGCTCAAGGCGGAGAGGTCCTGGCTTCGGCTT
TACGAGCGCGACGGTCTACCCGTGCATGTCTTTCGTCTGGCCGGGATCTA
CGGTCCCGGAAGAAGCGCTCTGGATGCTGTCGCGAGGCATAACGGGGACA
TTCGACTGGCCGGCTCTGACGACGGGACGATGGTTTCTCGGACGCACGTA
TCCGACATTGTTGGGGTGTTGGAGGCCTCGATCGAGCGGCCCGAACCTGG
CATGGTGCTCAACGTCGCCGACGATCTCCCGTCTACGAGATACGAG
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