mRNA_Ecto-sp13_S_contig18469.5757.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18469.5757.1
Unique NamemRNA_Ecto-sp13_S_contig18469.5757.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18469.5757.1 vs. uniprot
Match: D7G1K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1K5_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 3.890e-113
Identity = 208/234 (88.89%), Postives = 211/234 (90.17%), Query Frame = 1 
Query:  283 MGAIMVDDPAVILFAGGIGRGGMVVDSNVDVFAVPLDVSEDXXXXXXXXXXXXXXXXXXXEEALVDRDVLSLGVARTDMGAGGTSSAVFFAGGCGMEDVGDNHQQETQSSGPTIVQGXXXXXXGGVAVDVPPGADPDVPLLLKNCQATDAVDVFLLGSGGGGGDGAQQAKGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPSAWAPTAHVLVAGGIIPTGGGEGGGQYTA 984
            MGA+MVDDPAVILFAGGIGRGGMVVDSNVDVFAVPLDV EDXXXXXXXXXXXXXXXXXX EE LVDRDVLSLGVARTDMGAGGTSSA+FFAGGCGMEDVGD                XXXXXX GVAVDVPPGADPDVPLLLKNCQATDAVDVF LGSGGGG DGAQ+ KGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPSAWAPTAHVLVAGGIIPTGGGEGGGQYTA
Sbjct:    1 MGAVMVDDPAVILFAGGIGRGGMVVDSNVDVFAVPLDVDEDXXXXXXXXXXXXXXXXXX-EETLVDRDVLSLGVARTDMGAGGTSSAMFFAGGCGMEDVGDXXXXXXXXXXXXXXXXXXXXXXXGVAVDVPPGADPDVPLLLKNCQATDAVDVFFLGSGGGG-DGAQEGKGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPSAWAPTAHVLVAGGIIPTGGGEGGGQYTA 232
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BLAST of mRNA_Ecto-sp13_S_contig18469.5757.1 vs. uniprot
Match: A0A6H5KCH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCH0_9PHAE)

HSP 1 Score: 268 bits (686), Expect = 6.920e-81
Identity = 137/157 (87.26%), Postives = 142/157 (90.45%), Query Frame = 1 
Query:  517 MGAGGTSSAVFFAGGCGMEDVGDNHQQETQSSGPTIVQGXXXXXXGGVAVDVPPGADPDVPLLLKNCQATDAVDVFLLGSGGGGGDG-AQQAKGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPSAWAPTAHVLVAGGIIPTGGGEGGGQYTA 984
            MGAGGTSSAVFFAGGCGMEDVGD++QQETQSSGPTIVQ       GGVAVDVPPGADP+VPLLLKNCQATDAVDVFLLGSG       AQ+ KGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPSAWAPTAHVLVAGGI+PTGGGEGGGQYTA
Sbjct:    1 MGAGGTSSAVFFAGGCGMEDVGDDNQQETQSSGPTIVQDRGGESEGGVAVDVPPGADPNVPLLLKNCQATDAVDVFLLGSGXXXXXXXAQEGKGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPSAWAPTAHVLVAGGIVPTGGGEGGGQYTA 157
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BLAST of mRNA_Ecto-sp13_S_contig18469.5757.1 vs. uniprot
Match: A0A6H5KDG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDG8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 1.220e-29
Identity = 62/80 (77.50%), Postives = 65/80 (81.25%), Query Frame = 2 
Query:   65 MGDASALSSGMLQQCFCCCGSTS*ALPLPPTTTPLLLLQRNHAAVDSSFEMARQLLRTARQRKGCCCLEGEGSWAPS-WS 301
            MGD  ALSS +LQQC    GST  ALPL PTT PL LLQR+HAA DSSFEMAR+LLRTARQRKGCCCLEGE SWAPS WS
Sbjct:    1 MGDVFALSSRVLQQCXXXXGSTCSALPLRPTTAPLSLLQRSHAAEDSSFEMARRLLRTARQRKGCCCLEGEDSWAPSSWS 80
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BLAST of mRNA_Ecto-sp13_S_contig18469.5757.1 vs. uniprot
Match: A0A835ZD19_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD19_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.890e-13
Identity = 55/159 (34.59%), Postives = 74/159 (46.54%), Query Frame = 1 
Query:  484 DVLSLGVARTDMGAGGTSSAVFFAGGCGMEDVGDNHQQETQSSGPTIVQGXXXXXXGGVAVDVPPGADP--DVPLLLKNCQATDAVDVFLLGSGGGGGDGAQQAKGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPSAWAPTAHVLVAGGIIPTG 954
            +V SL + RTDMGA  T++A++  GGCG+                                     +DP  D  LL+ +C+ +D VDVF   +          +   L +       LCEPKYAAT GVF+TG PD+G    WA T HV+VAGGI+  G
Sbjct:   79 EVDSLSMPRTDMGAAVTNAAMYLVGGCGLY------------------------------------SDPIRDGLLLVNDCKPSDLVDVF---APNWTAAARLPSARPLPMQSTQGFHLCEPKYAATTGVFWTGEPDQGMGGPWAQTPHVVVAGGIVSVG 198
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18469.5757.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G1K5_ECTSI3.890e-11388.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KCH0_9PHAE6.920e-8187.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDG8_9PHAE1.220e-2977.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZD19_9STRA3.890e-1334.59Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18469contigEcto-sp13_S_contig18469:201..3480 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size984
Hectar predicted targeting categorymitochondrion
Exons3
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-07_001360.1
Cds size984
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.8946753-CDS-Ecto-sp13_S_contig18469:200..6941681462948.8946753-CDS-Ecto-sp13_S_contig18469:200..694Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18469 201..694 +
1681462948.9090235-CDS-Ecto-sp13_S_contig18469:2562..28951681462948.9090235-CDS-Ecto-sp13_S_contig18469:2562..2895Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18469 2563..2895 +
1681462948.9171984-CDS-Ecto-sp13_S_contig18469:3323..34801681462948.9171984-CDS-Ecto-sp13_S_contig18469:3323..3480Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18469 3324..3480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18469.5757.1prot_Ecto-sp13_S_contig18469.5757.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18469 201..3480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18469.5757.1

>prot_Ecto-sp13_S_contig18469.5757.1 ID=prot_Ecto-sp13_S_contig18469.5757.1|Name=mRNA_Ecto-sp13_S_contig18469.5757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=328bp
MRSRHRRPPPLAWRLHVRSSRDGRCLGPFLRDAAAVLLLLWIDQLSLAVA
ADHHTVVTSSTKSCGRRFLVRDGETAAPDSAAAEGLLLSRGRGFMGAIMV
DDPAVILFAGGIGRGGMVVDSNVDVFAVPLDVSEDDDDDDDDDNTTVGAV
GGGGEEALVDRDVLSLGVARTDMGAGGTSSAVFFAGGCGMEDVGDNHQQE
TQSSGPTIVQGGGGESGGGVAVDVPPGADPDVPLLLKNCQATDAVDVFLL
GSGGGGGDGAQQAKGKLSLLPPDAVRLCEPKYAATVGVFFTGSPDEGDPS
AWAPTAHVLVAGGIIPTGGGEGGGQYTA
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mRNA from alignment at Ecto-sp13_S_contig18469:201..3480+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18469.5757.1 ID=mRNA_Ecto-sp13_S_contig18469.5757.1|Name=mRNA_Ecto-sp13_S_contig18469.5757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3280bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18469:201..3480+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAAGTAGGCATAGGAGGCCGCCGCCGCTGGCGTGGCGCCTCCACGT
TCGTTCCAGTCGAGATGGGCGATGCCTCGGCCCTTTCCTCCGGGATGCTG
CAGCAGTGCTTCTGCTGTTGTGGATCGACCAGCTAAGCCTTGCCGTTGCC
GCCGACCACCACACCGTTGTTACTTCTTCAACGAAATCATGCGGCCGTAG
ATTCCTCGTTCGAGATGGCGAGACAGCTGCTCCGGACAGCGCGGCAGCGG
AAGGGCTGCTGCTGTCTCGAGGGAGAGGGTTCATGGGCGCCATCATGGTC
GACGATCCAGCGGTGATCTTGTTCGCGGGCGGCATCGGCAGGGGAGGAAT
GGTGGTCGATTCAAACGTTGATGTTTTCGCGGTTCCGCTGGACGTTAGTG
AAGATGATGATGACGATGACGACGACGACAACACCACTGTTGGTGCTGTC
GGGGGGGGGGGCGAAGAAGCGCTGGTGGACAGGGACGTCCTCTCGTGAGT
GTCTCGCGTAGGGTCCTTGAGAGAAGTGAAAAGAGATCACCTGCGTTCAT
GATTTTGTCTGCCGTAAAAATAGATACATGTTGTACGTTTGATCAATTAT
GCTTCCGCGACGATGAATGGGGTTAGCCTCTGTTTTACAGCAGGTATCAT
CTGTCTGAACACGTGCCATAAAGTAAGCGAGGGGCTTGGAAATTCCAACC
ATGGGAGTCGGGTTTGTGTTCCGGAATGTCTTGAACTCCTTCTTGACCAA
TACCACGCTGCAACATTTCGCGGCGCGTCACGGCACCGCCGCCAAGCAGT
CGGTTGCGGCTAGCCGATGTCCTTCGTGTCCTGCCTGCGGATGACAAAAG
ACGTGGAGAGCTGAAACAGCAGAGATGGTACACGCAGTAGTGAAAGCAAA
ACTGCTCAAGCGAAACTGATCTCGCCCTGGCGTGGTGGGTGCTACAACAG
CACAAGTGCGGAGTGCGTGTGTGTGCTCTGCTTGCATGTGCGTGTTGGTT
GTTCCGCCGACCTCATGGTAATGATCTAGAATACTTGAGGGGTACATGCA
GCGTTGCAGTCTTCGCTCCGTAGGCTGTTTTGACTTCAACTCCTGTAGAC
TCTTACCACTCCGTTCCGCCGACAAGAGACCAGAAGCAACACGGCGCTTC
GCACCTGCCCCACCCACCCCCGACCAAACCCTCGTTCAATCGTGTCCTGT
GTCCATACATGCACATCTGAAATAGAAGTTTTCGATTTTTGAGGGGAAGT
CCGCCTAACGAAAGGTCACCACCACCTGCGGTTTGAAAGGTCAACACAAC
ACCACCACCTGTAACGACCACCAGACCAGACTCTACCACCGCAAAGTTCT
ATAGCACTCACAAAAAGGGTAGTGCTTCGGTGTATGTATGTGCATACATT
CTTGTGTCTTCCCTCCACGTATTTTCATGACAATATAAATACATGCACGA
CGAAACCAAGCAAGCACGATGCCCATGCTTCAAGGAGGTGTACCCCCTGT
GGGCCGTTCTGCAGTACCCTCGTTCCGAAGACTTTCTAGCTTCCAGGACC
TACCGGCACACATCACCTCTTGGTGTTTAATGCATACGGCGGTACACTTC
TGCTGTGTACATGCCGGTGGTTCCGTTTCAGACTGGCGAAGATAACTGCG
GAGTGGCGGGTTTTGAACAAATACCGACAAGCCCTTGACAACCCTGCAAT
GATACATCCTGAGTTTCAAGGAAAGTATCGTAGGTGACATAAGATAGCAC
GCACCCTAGACCGTTTTTTTAACGCTCGATTGCCGCACGACGAAGAGTAT
GCCAAAATCAAGAGCGGCGTTTTCGGAAGCTCTCGATGAGGCGGTTCCAA
CGCCACTGCTTTTCGGCGCCTTCACTGATTGTACGCATGTTCGCTGCATA
GTTGTCGAGCTTTGAATATCGGCCCACGGGGTGTGGTATCTTGTGCAATC
TGCGGTATCGCGCCATGGTACTGACGCCGAGGTACTGCTTGAGGTTTGTA
TGCATCTACTAGCACAGAGCAAATATAATGTGACACCGCCACCACCACGA
TGCCACAAAACCTTGTGCTTTTTAAAGTTGGCATGGAATCTTGATCCTCT
CCTTCCCTTCTCTTCCCTTCCCAACAACAATGCTCGGAGGGCCGTCTTCT
GCAACTGCAACTACAATGCTGAGAAAGCTCTATGCATTGCACGACTGCTG
CACTTACGTAGCGCGCGCAGTGGATTTTTTTTTCTCCGTCTCTTTCTCTG
TCTCTTTCTCGCCACAACGAGGACCTCCCAGAGAAAAGTGTCCCGTGCCC
GCCCCCGTGCCAACCTTCCGCCCTCTTTCGCCCGATAACCACAACGCGAA
ACAACCAACAAGGCTTGGAGTCGCCAGGACCGACATGGGAGCGGGGGGGA
CAAGCAGTGCGGTGTTCTTTGCCGGGGGGTGCGGCATGGAGGACGTCGGG
GACAACCACCAACAAGAGACCCAAAGCTCAGGGCCTACAATCGTTCAAGG
TGGTGGTGGGGAGAGCGGGGGCGGGGTTGCCGTTGACGTGCCCCCAGGAG
CGGACCCCGATGTGCCCTTGCTGCTCAAAAACTGTCAGGCCACGGACGCG
GTGGATGTGTTTTTGTTGGGGAGCGGCGGCGGCGGCGGCGATGGGGCGCA
ACAAGCGAAAGGGAAGCTGTCGCTTCTTCCTCCGGACGCCGTAAGGTGAG
TTTCAGCCGTCAGCTGCGCCGTTGTCCATGCTGAAGTACGTCACGTATAG
ACCCCCCGAGTGTATGGTATCTAGTTTTCCTCTTTTTCGAACATGTTTTT
CGTGCGTTTTTTTTGCGTTGCATGGTCCTCGTGTGGTCTTTTTTGTGGAA
CACGCCGTGTCTTGCCTGCGCCATATTATGACTCCCGTGTTTTGAAGTTC
ACTGCACGACGTGAGACTTCGTTTCGGGTGTGGGTCACAATTTTTGGGTT
GGTTCAGGTTGTAGACAGGAGGGAGGTGGAACAGAGGGGAACAAATTTGT
GCCGGTATTGCGGTTGCTGCTGCTTCTGTTATCTCTACATGAACAACCGT
TCCGGTCTTTGCTCAACATCCCTACCCGGTTCCAACAAAGACGCGGACGC
CTTCTTTCCCTGGCCGACAACAGGCTGTGCGAGCCCAAGTACGCCGCCAC
GGTGGGGGTGTTTTTCACGGGGTCCCCGGACGAGGGTGACCCTTCCGCCT
GGGCGCCGACGGCGCACGTCCTCGTGGCCGGAGGCATTATACCCACGGGG
GGCGGGGAAGGGGGGGGTCAGTACACGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18469:201..3480+

>mRNA_Ecto-sp13_S_contig18469.5757.1 ID=mRNA_Ecto-sp13_S_contig18469.5757.1|Name=mRNA_Ecto-sp13_S_contig18469.5757.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=984bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18469:201..3480+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGAAGTAGGCATAGGAGGCCGCCGCCGCTGGCGTGGCGCCTCCACGT
TCGTTCCAGTCGAGATGGGCGATGCCTCGGCCCTTTCCTCCGGGATGCTG
CAGCAGTGCTTCTGCTGTTGTGGATCGACCAGCTAAGCCTTGCCGTTGCC
GCCGACCACCACACCGTTGTTACTTCTTCAACGAAATCATGCGGCCGTAG
ATTCCTCGTTCGAGATGGCGAGACAGCTGCTCCGGACAGCGCGGCAGCGG
AAGGGCTGCTGCTGTCTCGAGGGAGAGGGTTCATGGGCGCCATCATGGTC
GACGATCCAGCGGTGATCTTGTTCGCGGGCGGCATCGGCAGGGGAGGAAT
GGTGGTCGATTCAAACGTTGATGTTTTCGCGGTTCCGCTGGACGTTAGTG
AAGATGATGATGACGATGACGACGACGACAACACCACTGTTGGTGCTGTC
GGGGGGGGGGGCGAAGAAGCGCTGGTGGACAGGGACGTCCTCTCGCTTGG
AGTCGCCAGGACCGACATGGGAGCGGGGGGGACAAGCAGTGCGGTGTTCT
TTGCCGGGGGGTGCGGCATGGAGGACGTCGGGGACAACCACCAACAAGAG
ACCCAAAGCTCAGGGCCTACAATCGTTCAAGGTGGTGGTGGGGAGAGCGG
GGGCGGGGTTGCCGTTGACGTGCCCCCAGGAGCGGACCCCGATGTGCCCT
TGCTGCTCAAAAACTGTCAGGCCACGGACGCGGTGGATGTGTTTTTGTTG
GGGAGCGGCGGCGGCGGCGGCGATGGGGCGCAACAAGCGAAAGGGAAGCT
GTCGCTTCTTCCTCCGGACGCCGTAAGGCTGTGCGAGCCCAAGTACGCCG
CCACGGTGGGGGTGTTTTTCACGGGGTCCCCGGACGAGGGTGACCCTTCC
GCCTGGGCGCCGACGGCGCACGTCCTCGTGGCCGGAGGCATTATACCCAC
GGGGGGCGGGGAAGGGGGGGGTCAGTACACGGCC
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