mRNA_Ecto-sp13_S_contig18453.5750.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18453.5750.1
Unique NamemRNA_Ecto-sp13_S_contig18453.5750.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: A0A6H5KTB3_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTB3_9PHAE)

HSP 1 Score: 260 bits (665), Expect = 1.450e-76
Identity = 188/202 (93.07%), Postives = 189/202 (93.56%), Query Frame = 1 
Query:    1 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKV------------AYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLETLVADLKRLVIPGSRAA 570
            RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKV            AYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RDLETLVADLKRLVIPG+RAA
Sbjct: 1022 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVKLQRRSRARGQVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDLETLVADLKRLVIPGNRAA 1223
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BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: D8LI68_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI68_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 1.580e-41
Identity = 140/190 (73.68%), Postives = 141/190 (74.21%), Query Frame = 1 
Query:    1 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRDLETLVADLKRLVIPGSRAA 570
            RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVA                                                ALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX RDLETLVADLKRLVIPG+RAA
Sbjct: 1332 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVA------------------------------------------------ALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRDLETLVADLKRLVIPGNRAA 1473
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BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: A0A835Z5T3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5T3_9STRA)

HSP 1 Score: 109 bits (273), Expect = 5.390e-24
Identity = 70/135 (51.85%), Postives = 93/135 (68.89%), Query Frame = 1 
Query:    1 RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADGKSGSDAGITGPDGAAGPERGLTITRAREIAARVS 405
            R+D  +ELAELR+  + LE+RSDDD LIG+LQR+L A + A+R+ ARKHE T+ANLRRK A LR+LE  L+ RE AL  L ERS+ +VAALKGAL+  AD      AG+T  +     ++ L + R R+ A RV+
Sbjct:  589 RQDEAEELAELRRHAAALEARSDDDLLIGRLQRRLLALRGAHRALARKHEATRANLRRKAAALRLLEGHLEAREGALGALAERSRAQVAALKGALVQLAD------AGVTSDE----LQQQLNLARGRDFAERVA 713
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BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: A0A7S2WLQ0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WLQ0_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 4.910e-8
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1 
Query:   97 RKLTATKVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDF 294
            R+LT T+ +YR+FARK+++     RRK AL R LE RLD+R+ ALH + E  + +V ALK AL + 
Sbjct:    1 RQLTTTRTSYRAFARKYDVALVRARRKEALARKLEERLDERDKALHAVSEEKRLQVGALKAALSEL 66
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BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Match: A0A7S1XKY7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XKY7_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 8.800e-6
Identity = 32/95 (33.68%), Postives = 58/95 (61.05%), Query Frame = 1 
Query:   19 ELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVAYRSFARKHEMTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFADG 303
            EL +LR+ + D+E +SDD+ +IG+LQR++   +   +   ++H   +A +R++ A+ RVL++RL+ REDA     + +      L+ A+   ADG
Sbjct:  144 ELEQLRQALMDMEQQSDDNVIIGKLQRQIFGFRAKMQELEQEHGSLRAQMRKREAMARVLDARLEVREDAFAKYRDEATRAREELEAAVRTLADG 238
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18453.5750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KTB3_9PHAE1.450e-7693.07Reverse transcriptase domain-containing protein n=... [more]
D8LI68_ECTSI1.580e-4173.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z5T3_9STRA5.390e-2451.85Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2WLQ0_9STRA4.910e-848.48Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A7S1XKY7_9STRA8.800e-633.68Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18453contigEcto-sp13_S_contig18453:299..2295 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size653
Hectar predicted targeting categoryother localisation
Exons4
Cds size651
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.2471135-CDS-Ecto-sp13_S_contig18453:298..4151681462948.2471135-CDS-Ecto-sp13_S_contig18453:298..415Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18453 299..415 +
1681462948.2669947-CDS-Ecto-sp13_S_contig18453:663..8071681462948.2669947-CDS-Ecto-sp13_S_contig18453:663..807Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18453 664..807 +
1681462948.2779224-CDS-Ecto-sp13_S_contig18453:1227..13921681462948.2779224-CDS-Ecto-sp13_S_contig18453:1227..1392Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18453 1228..1392 +
1681462948.2891917-CDS-Ecto-sp13_S_contig18453:2068..22931681462948.2891917-CDS-Ecto-sp13_S_contig18453:2068..2293Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18453 2069..2293 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18453.5750.1prot_Ecto-sp13_S_contig18453.5750.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18453 299..2293 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18453.5750.1

>prot_Ecto-sp13_S_contig18453.5750.1 ID=prot_Ecto-sp13_S_contig18453.5750.1|Name=mRNA_Ecto-sp13_S_contig18453.5750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
RKDTEDELAELRKTVSDLESRSDDDRLIGQLQRKLTATKVAYRSFARKHE
MTKANLRRKTALLRVLESRLDKREDALHDLHERSQEKVAALKGALIDFAD
GKSGSDAGITGPDGAAGPERGLTITRAREIAARVSELTAALETSEAGLRA
AELSRRSAEVDAETAEERRRDLETLVADLKRLVIPGSRAAAAAGGGSSGV
ATASRDKDDDDDHAVGG
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mRNA from alignment at Ecto-sp13_S_contig18453:299..2295+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18453.5750.1 ID=mRNA_Ecto-sp13_S_contig18453.5750.1|Name=mRNA_Ecto-sp13_S_contig18453.5750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1997bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18453:299..2295+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAAGGATACAGAGGATGAGCTGGCGGAGCTGCGGAAAACCGTGTCCGA
CCTAGAGAGCCGGAGCGACGACGACCGCCTCATCGGGCAGCTTCAGAGGA
AGCTCACGGCGACGAAGGTGAAGCTTGAGCGAAGATCTCGCGCGCGTGGT
CAGATTCCACCGGGATAGGTTCCCGCCGTGGTAATACGGATTAGCCCTCC
TAGCACCAAATAAGAACCCCCTACTAGCGACCACTGTTTTGTTCTGACTG
TTCATCCCCGGCTGGCGCGTGCTCACTGCAACCCGCTCCGTCGTAGAGCC
ACGGTAGGAGGAGGGCCTCACACCGAATGTTCACGTGTTTTTCGACGACG
ACGACGACGATGCAGGTGGCTTATCGCTCGTTCGCGCGAAAGCACGAGAT
GACTAAGGCCAACCTTCGCCGAAAGACAGCCCTGCTCCGGGTGCTGGAGT
CGAGGTTGGACAAGCGCGAGGACGCTCTGCACGATCTGCACGAGAGAAGC
CAGGAGAAGGTGTGTGCGTAGTGTCAGTTGGGTCAGTGCTGGGCTTGGGG
GTTAAGGGGCATGACAAGCGCGAGCTGCACGAGGTGCGTGGTGCCGTTTC
GTGCACGCACATACGTACATACGAGTGTACCGTCGGATTTGGTCTCGGAA
CCGCCACGTCGAACGTGCACAAACGTCGGCTGTCATTTGAGCATGTAACA
GGCGAACGGTCAAGGAACCCCCCCCCCCCGCCCAATACCCCGCAAATGCC
ACCCTCATTAAACTCCTCGTGAACCCCGATGCCTCCCGGAAGGAACGATT
GGCCATCGGTGATCGATCCTGTTGGGAACAATGCTCCATCCCTCTCAAGG
AATCGTTGTCGATGGTCGAATAACTATTACATGCAAAACACGAATACGCC
CCCCGGTGTTGCCTGCGTGTGACTACTAGGTGGCCGCCCTGAAGGGGGCT
CTGATCGACTTCGCGGACGGTAAATCGGGATCCGACGCCGGTATCACTGG
GCCGGACGGGGCTGCCGGGCCCGAGCGCGGGCTGACGATAACTCGCGCAA
GGGAGATAGCCGCCAGGGTGTCGGAGCTCACGGCCGCTCTCGAGGTGCAC
GATTTTTTTTTTTATCACCAGCGACGGACAACAACCACTTTATGATGCAT
TCAATCTTCGCGACCCGATGTTTCAGTTAGATTAAGACTAACTGAGTAGG
TCTTGTGGACAAGCGCTGACTCTTTGCAGTCTAATGGATTAGCCTTTATC
TAACAAATTATGTCTTAACGGAATAGCCTTACCTAACTAATGATATGTGC
TACGGTAGCGATATCCGGCGAACCCCTTTCCCCATCGGCCTTTCTTTAAC
AGTCTCGATGAAGCGCTGAAGGGAGGGTGCACTTAAGGGAGGCTTTGTTT
GTGTTTTGGAAGGGGAATCTCTGTAAAAAACTTGTCTCTCGAGCCTTGGA
CAAGGTGCACCATCCGAGATGTCGAGGTTGAGGTATCGACCGCGTGTCAG
GACCGTGCGATGCCTCGTGCAACAAATGTTACTACTACTTATTGTTCTCT
TTCGTGAAAAAAACCCAGAAAGTTCCGATTTCTGCTGGAGCAGTACCTCC
TAACACCCGTACATTTTGATGCAACTGACGCGGACACCTTCCGTGGTGAA
ACTTCGCCGCGCGCGTTTCCGAGTTTCGCTTCTCTTGCTTGCCTCCCGCC
TGCCACACCTGCTGTATCTCCTGTAACGTTCCGCCACTTGTTGTACTGGC
TGTGCGTGCGTTGAGAGCAGACAAGCGAGGCTGGCCTTAGGGCCGCGGAG
CTGTCCCGCCGGTCGGCAGAGGTCGACGCCGAGACCGCGGAGGAACGCCG
CCGCGACCTGGAAACCCTCGTCGCAGACCTGAAACGCCTCGTCATCCCGG
GTAGTCGCGCCGCTGCCGCCGCCGGTGGTGGATCAAGCGGCGTGGCTACG
GCATCAAGGGACAAGGACGACGACGACGACCACGCGGTCGGCGGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18453:299..2295+

>mRNA_Ecto-sp13_S_contig18453.5750.1 ID=mRNA_Ecto-sp13_S_contig18453.5750.1|Name=mRNA_Ecto-sp13_S_contig18453.5750.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18453:299..2295+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGCAAGGATACAGAGGATGAGCTGGCGGAGCTGCGGAAAACCGTGTCCGA
CCTAGAGAGCCGGAGCGACGACGACCGCCTCATCGGGCAGCTTCAGAGGA
AGCTCACGGCGACGAAGGTGGCTTATCGCTCGTTCGCGCGAAAGCACGAG
ATGACTAAGGCCAACCTTCGCCGAAAGACAGCCCTGCTCCGGGTGCTGGA
GTCGAGGTTGGACAAGCGCGAGGACGCTCTGCACGATCTGCACGAGAGAA
GCCAGGAGAAGGTGGCCGCCCTGAAGGGGGCTCTGATCGACTTCGCGGAC
GGTAAATCGGGATCCGACGCCGGTATCACTGGGCCGGACGGGGCTGCCGG
GCCCGAGCGCGGGCTGACGATAACTCGCGCAAGGGAGATAGCCGCCAGGG
TGTCGGAGCTCACGGCCGCTCTCGAGACAAGCGAGGCTGGCCTTAGGGCC
GCGGAGCTGTCCCGCCGGTCGGCAGAGGTCGACGCCGAGACCGCGGAGGA
ACGCCGCCGCGACCTGGAAACCCTCGTCGCAGACCTGAAACGCCTCGTCA
TCCCGGGTAGTCGCGCCGCTGCCGCCGCCGGTGGTGGATCAAGCGGCGTG
GCTACGGCATCAAGGGACAAGGACGACGACGACGACCACGCGGTCGGCGG
T
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