mRNA_Ecto-sp13_S_contig18447.5748.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18447.5748.1
Unique NamemRNA_Ecto-sp13_S_contig18447.5748.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18447.5748.1 vs. uniprot
Match: D8LH18_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LH18_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 5.900e-98
Identity = 150/161 (93.17%), Postives = 150/161 (93.17%), Query Frame = 1 
Query:    1 GTSPSALTPTPHRTRALESMSEHRGVLKRRRLLLCAETGGRGQEPVEPVAVLRTAVETRKVPMAEVSEALRVLAEDGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFK 483
            GTSPSALTP PHRTRALESMSEHRGV KRRRLL  AE G  GQE VEP AVLRTAVETRKVPM EVSEALRVLA DGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFK
Sbjct:   27 GTSPSALTPAPHRTRALESMSEHRGVPKRRRLLY-AEGGXXGQESVEPAAVLRTAVETRKVPMTEVSEALRVLAADGGSPLACGAEDVEGSWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAFMLGAVKLGPFK 186
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BLAST of mRNA_Ecto-sp13_S_contig18447.5748.1 vs. uniprot
Match: A0A836CJ46_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ46_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.760e-16
Identity = 47/116 (40.52%), Postives = 72/116 (62.07%), Query Frame = 1 
Query:  145 VAVLRTAVETRKVPMAEVSEALRVLAEDGGSPLACGAEDVEG-SWELVFSTQLKSGYMPIRELVGFYPSREEASIDATAGP-LPIGGMRGKCWWR---GGEENELAFMLGAVKLGP 477
            VA++  +V+TR++P   V +AL  L +      A   +DV+G +WELVFS+QL  GYMP+RE++ F  S  + S+  T GP +P+GG++G C W+   G +   ++F L  V LGP
Sbjct:   49 VALVLESVDTRQIPAENVVQALESLEQKAQ---AVRQQDVDGLNWELVFSSQLSKGYMPVREVICFDISNGKISLSTTFGPGIPLGGIQGTCSWQEPEGSQPGVVSFNLSKVLLGP 161
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18447.5748.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LH18_ECTSI5.900e-9893.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJ46_9STRA4.760e-1640.52Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18447contigEcto-sp13_S_contig18447:1868..3485 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size483
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-06_010890.1
Cds size483
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462948.1203852-CDS-Ecto-sp13_S_contig18447:1867..20481681462948.1203852-CDS-Ecto-sp13_S_contig18447:1867..2048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18447 1868..2048 +
1681462948.132073-CDS-Ecto-sp13_S_contig18447:2388..24601681462948.132073-CDS-Ecto-sp13_S_contig18447:2388..2460Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18447 2389..2460 +
1681462948.1417284-CDS-Ecto-sp13_S_contig18447:2980..31251681462948.1417284-CDS-Ecto-sp13_S_contig18447:2980..3125Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18447 2981..3125 +
1681462948.158341-CDS-Ecto-sp13_S_contig18447:3400..34851681462948.158341-CDS-Ecto-sp13_S_contig18447:3400..3485Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18447 3401..3485 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18447.5748.1prot_Ecto-sp13_S_contig18447.5748.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18447 1868..3485 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18447.5748.1

>prot_Ecto-sp13_S_contig18447.5748.1 ID=prot_Ecto-sp13_S_contig18447.5748.1|Name=mRNA_Ecto-sp13_S_contig18447.5748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp
GTSPSALTPTPHRTRALESMSEHRGVLKRRRLLLCAETGGRGQEPVEPVA
VLRTAVETRKVPMAEVSEALRVLAEDGGSPLACGAEDVEGSWELVFSTQL
KSGYMPIRELVGFYPSREEASIDATAGPLPIGGMRGKCWWRGGEENELAF
MLGAVKLGPFK
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mRNA from alignment at Ecto-sp13_S_contig18447:1868..3485+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18447.5748.1 ID=mRNA_Ecto-sp13_S_contig18447.5748.1|Name=mRNA_Ecto-sp13_S_contig18447.5748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1618bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18447:1868..3485+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACGTCGCCTTCGGCTCTCACGCCAACACCCCATCGCACGCGAGCGCT
AGAAAGCATGAGCGAGCACCGTGGAGTTCTTAAGCGAAGAAGGCTGCTTC
TTTGCGCGGAGACCGGAGGGAGGGGCCAGGAGCCAGTGGAACCAGTTGCG
GTGTTACGAACGGCGGTGGAGACTCGGAAAGGTTGAGGTTTTCTTGCAAC
GACCTGTTGGGGAAAACGCAAGGTTATTAATCTGCTTGTGACCTCGTCGA
ATCCGGTGCTACGCGAAGCGAAGTTTGAGTCTAGAGAACGCGGTGATCGC
GTACTCGCGGGGAGCGGCCTAATCTTTGCGCAAACAAATCCGCGCTGGAG
CAGGTGATCAGCATCAGGGACGGGTATTGCGTGGATTGTTTCTTCGAGCG
ACTGAGGAAGAGGCGTGCTGCTTCCTGCACGTGGTGTGTAATTACTCTGT
GCCCGCCGTGCGGACCTCCCACTTCTGATTGGTGTGTTTTGTTCAAACTG
ATCTTCGCAACCGACAAACAGTGCCAATGGCGGAGGTGTCCGAGGCGCTG
AGGGTTCTGGCGGAAGATGGGGGCTCCCCGCTGGCTTGCGGAGGTACGTG
CGCGCATGTGCGACGCTCAGCCACGAAACGTTTTGTTGTGGGTTTCTTCG
AGGAGGGCTAACGTGCCCGGAAGGGGTGGGGTCCTCGCCCTTCGCCGATT
CTTGTGCGGGGGCCGTCGGTGCGGTGAACTCCCCCCCCTTCCCCCAACGG
ACCGCCTTCGCGGGAAATTCAGTATTACAAGGAAAATACAGCAGGGAGGG
GGTACGCAGACCCTATTCCCTAACCCTAATCCTATCCCAACTTCCCCGAT
TGTATGCTTTATCCAACATGTTTCCTGAAGACAACAAACCCTGCAAAGGC
TGCTGCCCCCAACAGAAGTAATCCCTTGTCATGCGGCCCTGAGACAAGGT
TATACTCGAAGTGAATCATCGGCACCGGCCACAAATGAATGAAGACTACC
GTCACAAATGACGCCACTCGTGGCAGCACACAATCCGTCCGTCACGCCTA
GTCTCCCCCAACCTTTGACCCCTGTTGCCCTCCCTCGACCCCCGTGAACT
CTCGGGAGAGCAGCTGAGGACGTGGAGGGTAGCTGGGAGCTCGTTTTCAG
CACCCAGCTCAAGAGCGGGTACATGCCGATCCGTGAGCTTGTCGGCTTCT
ACCCGTCCCGCGAAGAAGCCTCCATCGACGCTACGGCTGGGCCGCTGCCA
ATCGGGGGGTACGTGAATGGCTTTATTTCATGCTTAAGCAGGGCGTCCAC
CAAGAGCTAAGGACAATTTGGGGCTCTTGGCGAGATTCCTGGCCTGCACC
GCACACACTGCTCAGGCCACACGCTTTGCCCAAGCCACGCCACGCAAACC
GCCCCTCTTTTCCCCAACAAGAGTGTTCTCGAGCGCTGCTGCTGCTGTTG
TGTTGATGCTGCTCTCCCCTCCCCTCGCCAAACTCCCGCCGTGACACCCT
CCGCCGCCCTCCCGCGGGGCCCCCGAACTCCAGCATGCGCGGCAAGTGCT
GGTGGAGGGGGGGCGAGGAGAACGAGTTGGCGTTTATGCTGGGTGCCGTC
AAGCTAGGCCCATTCAAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18447:1868..3485+

>mRNA_Ecto-sp13_S_contig18447.5748.1 ID=mRNA_Ecto-sp13_S_contig18447.5748.1|Name=mRNA_Ecto-sp13_S_contig18447.5748.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18447:1868..3485+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAACGTCGCCTTCGGCTCTCACGCCAACACCCCATCGCACGCGAGCGCT
AGAAAGCATGAGCGAGCACCGTGGAGTTCTTAAGCGAAGAAGGCTGCTTC
TTTGCGCGGAGACCGGAGGGAGGGGCCAGGAGCCAGTGGAACCAGTTGCG
GTGTTACGAACGGCGGTGGAGACTCGGAAAGTGCCAATGGCGGAGGTGTC
CGAGGCGCTGAGGGTTCTGGCGGAAGATGGGGGCTCCCCGCTGGCTTGCG
GAGCTGAGGACGTGGAGGGTAGCTGGGAGCTCGTTTTCAGCACCCAGCTC
AAGAGCGGGTACATGCCGATCCGTGAGCTTGTCGGCTTCTACCCGTCCCG
CGAAGAAGCCTCCATCGACGCTACGGCTGGGCCGCTGCCAATCGGGGGCA
TGCGCGGCAAGTGCTGGTGGAGGGGGGGCGAGGAGAACGAGTTGGCGTTT
ATGCTGGGTGCCGTCAAGCTAGGCCCATTCAAA
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