mRNA_Ecto-sp13_S_contig18440.5745.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18440.5745.1
Unique NamemRNA_Ecto-sp13_S_contig18440.5745.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18440.5745.1 vs. uniprot
Match: A0A6H5KJ55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ55_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 9.880e-81
Identity = 140/155 (90.32%), Postives = 143/155 (92.26%), Query Frame = 2 
Query:    2 GKQPPYIAIAGDCSQSAYILRPAPVASASAGTAADGGSEAKGAWEQEAAPLGYEIACAIEVPGTVGSLAVSYGQLLGEDGTMEGFDTVGPPSPPQPPVAAPEGSLEGAGRRRREEGLRPSPQPQPRGGADGWAKLFVPNYDGNKIYVFSMEPAMQ 466
            GKQPPYIAIAGDCSQSAYILRPAP AS SAGTAA GG E KGAWEQEAAPLGYEIACAIEVPGTVGSLAVSYGQLLGEDGTMEGFDT  PPSPP PPVA+PE  LEGAGRRRREEG+RPSPQPQ RG ADGWAKLFVPNYDGNKIY+FSMEPAMQ
Sbjct: 1063 GKQPPYIAIAGDCSQSAYILRPAPAASGSAGTAAGGGPETKGAWEQEAAPLGYEIACAIEVPGTVGSLAVSYGQLLGEDGTMEGFDTAEPPSPPHPPVASPEVFLEGAGRRRREEGVRPSPQPQRRG-ADGWAKLFVPNYDGNKIYIFSMEPAMQ 1216
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BLAST of mRNA_Ecto-sp13_S_contig18440.5745.1 vs. uniprot
Match: A0A836CJ47_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJ47_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 2.040e-10
Identity = 50/151 (33.11%), Postives = 59/151 (39.07%), Query Frame = 2 
Query:   14 PYIAIAGDCSQSAYILRPAPVASASAGTAADGGSEAKGAWEQEAAPLGYEIACAIEVPGTVGSLAVSYGQLLGEDGTMEGFDTVGPPSPPQPPVAAPEGSLEGAGRRRREEGLRPSPQPQPRGGADGWAKLFVPNYDGNKIYVFSMEPAMQ 466
            PYIA+AGDCSQ+AY+LRP  V                         L YE+ C I+  GTVGSLAVS+G L G                                                 GG DG AKLFVPNYD  K+Y+F +    Q
Sbjct:  307 PYIALAGDCSQAAYVLRPCGVG------------------------LDYELVCRIDCEGTVGSLAVSHGPLCG-------------------------------------------------GGDDGCAKLFVPNYDQGKVYIFGLGETQQ 384
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BLAST of mRNA_Ecto-sp13_S_contig18440.5745.1 vs. uniprot
Match: A0A7S1TPM8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPM8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 3.120e-7
Identity = 45/150 (30.00%), Postives = 67/150 (44.67%), Query Frame = 2 
Query:    2 GKQPPYIAIAGDCSQSAYILRPAPVASASAGTAADGGSEAKGAWEQEAAPLGYEIACAIEVPGTVGSLAVSYGQLLGEDGTMEGFDTVGPPSPPQPPVAAPEGSLEGAGRRRREEGLRPSPQPQPRGGADGWAKLFVPNYDGNKIYVFSM 451
            G   PY+ +AGDC+Q+AY+L+P                E  GA +       Y++   IEV G VGSLAV YG  +  +  ++GF                  +  G+      E    +P        D WA++ VPNYDG++++VF M
Sbjct:  516 GDAKPYLLLAGDCAQAAYVLKP---------------REGGGADD-------YDVQGVIEVNGAVGSLAVCYGSRI--ENALKGFPD----------------ARSGSSAWEEVESEAGAPCEDDADEEDDWARILVPNYDGDEVHVFKM 625
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18440.5745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KJ55_9PHAE9.880e-8190.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CJ47_9STRA2.040e-1033.11Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1TPM8_9STRA3.120e-730.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18440contigEcto-sp13_S_contig18440:172..881 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size711
Hectar predicted targeting categoryother localisation
Exons1
Cds size423
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.9726138-CDS-Ecto-sp13_S_contig18440:171..5941681462947.9726138-CDS-Ecto-sp13_S_contig18440:171..594Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18440 172..594 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.9819467-UTR-Ecto-sp13_S_contig18440:594..8811681462947.9819467-UTR-Ecto-sp13_S_contig18440:594..881Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18440 595..881 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18440.5745.1prot_Ecto-sp13_S_contig18440.5745.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18440 172..594 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18440.5745.1

>prot_Ecto-sp13_S_contig18440.5745.1 ID=prot_Ecto-sp13_S_contig18440.5745.1|Name=mRNA_Ecto-sp13_S_contig18440.5745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=141bp
GQTAPLHRHRRRLLAVGVHPPTSARGVGIRGNGGGRRIRSQGRLGARGRP
ARLRDSLRDRGARHGRVPGGQLRPVAWGGRHDGGVRYRGTPFAAAAAGCG
ARGLFGGSGAAAARGRLAPVAAASASGWCGRVGETVRAQL*
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mRNA from alignment at Ecto-sp13_S_contig18440:172..881+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18440.5745.1 ID=mRNA_Ecto-sp13_S_contig18440.5745.1|Name=mRNA_Ecto-sp13_S_contig18440.5745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=710bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18440:172..881+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCAAACAGCCCCCCTACATCGCCATCGCCGGCGACTGCTCGCAGTCGG
CGTACATCCTCCGACCAGCGCCCGTGGCGTCGGCATCCGCGGGAACGGCG
GCGGACGGAGGATCCGAAGCCAAGGGCGCTTGGGAGCAAGAGGCCGCCCC
GCTCGGCTACGAGATAGCTTGCGCGATCGAGGTGCCCGGCACGGTCGGGT
CCCTGGCGGTCAGCTACGGCCAGTTGCTTGGGGAGGACGGCACGATGGAG
GGGTTCGATACCGTGGGACCCCCTTCGCCGCCGCAGCCGCCGGTTGCGGC
GCCAGAGGGCTCTTTGGAGGGAGCGGGGCGGCGGCGGCGCGAGGAAGGCT
TGCGCCCGTCGCCGCAGCCTCAGCCTCGGGGTGGTGCGGACGGGTGGGCG
AAACTGTTCGTGCCCAACTATGACGGCAACAAGATTTACGTCTTCTCGAT
GGAGCCGGCGATGCAATAGCAACAGCAACAGCTAGCTGCGCACCCGGCGA
TTTTTGAAAGAGATTTTGTGTGCGGCGGGTGATGTGGCATGGGTGTCGTC
ACCCGGTGTGTTCTTGCCCGCCCTGTGCGTCCGGAACGGTTTTGGATGGG
TATCGCGGCAGCGTTGCCGCGGGCCGTCGCGAATTTGTTAACCTCGGTCG
TGTTTTCTGTAGTTCGTGGAAGTGCGTGCGGGTGAGTTTTGCGCGCTTAG
CTCCTTTTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18440:172..881+

>mRNA_Ecto-sp13_S_contig18440.5745.1 ID=mRNA_Ecto-sp13_S_contig18440.5745.1|Name=mRNA_Ecto-sp13_S_contig18440.5745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=423bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18440:172..881+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGCAAACAGCCCCCCTACATCGCCATCGCCGGCGACTGCTCGCAGTCGG
CGTACATCCTCCGACCAGCGCCCGTGGCGTCGGCATCCGCGGGAACGGCG
GCGGACGGAGGATCCGAAGCCAAGGGCGCTTGGGAGCAAGAGGCCGCCCC
GCTCGGCTACGAGATAGCTTGCGCGATCGAGGTGCCCGGCACGGTCGGGT
CCCTGGCGGTCAGCTACGGCCAGTTGCTTGGGGAGGACGGCACGATGGAG
GGGTTCGATACCGTGGGACCCCCTTCGCCGCCGCAGCCGCCGGTTGCGGC
GCCAGAGGGCTCTTTGGAGGGAGCGGGGCGGCGGCGGCGCGAGGAAGGCT
TGCGCCCGTCGCCGCAGCCTCAGCCTCGGGGTGGTGCGGACGGGTGGGCG
AAACTGTTCGTGCCCAACTATGA
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