mRNA_Ecto-sp13_S_contig1843.5740.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1843.5740.1 vs. uniprot
Match: A0A6H5LC29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LC29_9PHAE) HSP 1 Score: 1145 bits (2963), Expect = 0.000e+0 Identity = 743/921 (80.67%), Postives = 769/921 (83.50%), Query Frame = 1
Query: 1 PVLEGFLAFFRACFGEDILRDSEKSMVSVVERGDCRTTESVARYLEHGLRVCREEGVKPRDFSLLRGRSALTGERDDADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVLNFLAPSSIDGGGFGGDGGCGDDGERRSSGLPEYSGPPWADVDTLTSKDAKVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGSGAGDLSNAIPDELARGATV-----------------------------------------KLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDTVQVVDMKSTGAMRIMATSHAIQEMARAGGADVDEIKMFLVWLEKSLVVQMPGGNEGKLQAMCQVLRRAVRQWRAHNVSVELSPMLASKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGLELRGQVVDARGQASAQAKLETEMGKMSQDLGVATRLVGAEGLSVETAKNPIISSNVEVSQQEAQSPQEAVVKRAVLLAQANAHGVGGFPTHKEEKVDDGDAAXXXXXXXAASTATPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXASTGRVLWRSPPRRNPAQVQEDETNGKQPDKRFEQQQDRNKQHQQ-----QDCHTPEPESIFRVTGSSAVDPPQSTLSHNEATNTVKIVAVGSQNRASAPAARNDAAVPWRSTALVRGGRGGDRGXXMKXXXAVQRRRGGYLRPAVQQKPGGLPLMAPLVPGVPAPHSGNSNIFRGGIGGTLQSYGGMHHHQEIVSRGQAVANGSFGGGQQQASFIQPTVGVPVVGQGGPQVVVQHHVXXXXXXXXXXFSVLQSPGDGAGESAHAGAASGGSAGYQATSHR 2625
PVLEGFLAFFRACFGEDI+RDSEKSMVSVVERGD RTTESVARYLEHGLRVCREEGVKP DFSLLR RSALTGE +DADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVL F APSSIDGGG GD CG DGE+RSSGLPEYSGPPWADVDTLTSKD KVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGS AGDLSNA PD LARGATV KLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPD +Q VDMKSTGAMRIMATSHA+QEMARAGGADVDE+KMFLVWLEK LVVQM GGNEGKLQAMC+VLR AVRQWRA NVSVELSPMLASKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDG+ELRGQVVD GQASAQAKLETEMGKMSQDLGVATRLVGAEGLSVE AKN +SSNV+VSQQEAQSP EAVV+RAVLLAQ +AHGVGG THKEEKVDDGDAA AA+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX AS GRVL+R PPRR PAQVQEDETN KQP KRFEQQQD QDCH PEPE I RVTG AVDPP+STLS N ATN IVAVGSQ+RASA AARNDA VPWRST R GRGG G MK AVQRRRG YLRPAVQ++PGGL LM PL+PGVP P SGN+NIFRGGIG TLQS+ GMHHHQEIVSRG+AVANGSFGGGQQQ++F+QPTVGVPVVGQG PQVVVQHH XXXXXXXXX FSVLQSPGDGAG+SAHAGAAS GSAGYQATSHR
Sbjct: 429 PVLEGFLAFFRACFGEDIVRDSEKSMVSVVERGDYRTTESVARYLEHGLRVCREEGVKPCDFSLLRARSALTGETEDADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVLKFSAPSSIDGGGDDGD--CGSDGEQRSSGLPEYSGPPWADVDTLTSKDVKVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGSSAGDLSNAFPDNLARGATVLFSCLRAAVEAATNARHVLLGPTVSLRLNLVAAPLNFGPKVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDIIQAVDMKSTGAMRIMATSHAVQEMARAGGADVDEVKMFLVWLEKRLVVQMTGGNEGKLQAMCRVLRHAVRQWRAQNVSVELSPMLASKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGMELRGQVVDPCGQASAQAKLETEMGKMSQDLGVATRLVGAEGLSVEKAKNACVSSNVDVSQQEAQSPPEAVVERAVLLAQVSAHGVGGPLTHKEEKVDDGDAA-------AAAXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLPRSTTTAPASAGRVLFRPPPRRIPAQVQEDETNVKQPYKRFEQQQDXXXXXXXXXXXXQDCHAPEPEWISRVTGVGAVDPPRSTLSRNAATNNASIVAVGSQHRASASAARNDATVPWRSTTHFRDGRGGGEGGRMKSRGAVQRRRG-YLRPAVQREPGGLTLMGPLIPGVPVPDSGNNNIFRGGIGDTLQSHHGMHHHQEIVSRGEAVANGSFGGGQQQSTFMQPTVGVPVVGQGPPQVVVQHHXXXXXXXXXXHFSVLQSPGDGAGDSAHAGAASEGSAGYQATSHR 1329
BLAST of mRNA_Ecto-sp13_S_contig1843.5740.1 vs. uniprot
Match: D8LJ16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ16_ECTSI) HSP 1 Score: 725 bits (1871), Expect = 1.730e-250 Identity = 367/402 (91.29%), Postives = 376/402 (93.53%), Query Frame = 1
Query: 1 PVLEGFLAFFRACFGEDILRDSEKSMVSVVERGDCRTTESVARYLEHGLRVCREEGVKPRDFSLLRGRSALTGERDDADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVLNFLAPSSIDGGGFGGDGGCGDDGERRSSGLPEYSGPPWADVDTLTSKDAKVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGSGAGDLSNAIPDELARGATVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDTVQVVDMKSTGAMRIMATSHAIQEMARAGGADVDEIKMFLVWLEKSLVVQMPGGNEGKLQAMCQVLRRAVRQWRAHNVSVELSPMLASKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGLELRGQVVDARGQASAQAKLETE 1206
PVLE FLAFFRACFGEDI+RDSE S+VSVVERGDCRTTESVARYLEHGLRVCREEGVKP +FSLLR RSALTGE +DADLHV CRTKGMATARSLCKISDCHGICADLVPPTVLNF APSS+DGGG GG CG DGERRS LPEYSGPPWADVDTLTSKD KVFQLWGLSGSVAPAFDHLVSQRTNR VNRCLELGSGAGDLSNAIPD LA+GATVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPD +Q VDMKSTGAMRIMATSHA+QEMARAGGADVDEIKMFLVWLE SLVVQ+ GGNEGKLQAMCQVLR AVRQWRA NVSVELSPML SKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGLELRGQVVD GQASAQAKLETE
Sbjct: 299 PVLESFLAFFRACFGEDIVRDSENSLVSVVERGDCRTTESVARYLEHGLRVCREEGVKPCEFSLLRARSALTGETEDADLHVLCRTKGMATARSLCKISDCHGICADLVPPTVLNFSAPSSVDGGGGGG---CGSDGERRSPDLPEYSGPPWADVDTLTSKDVKVFQLWGLSGSVAPAFDHLVSQRTNRSVNRCLELGSGAGDLSNAIPDNLAKGATVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDVIQAVDMKSTGAMRIMATSHAVQEMARAGGADVDEIKMFLVWLENSLVVQITGGNEGKLQAMCQVLRHAVRQWRAQNVSVELSPMLVSKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGLELRGQVVDPCGQASAQAKLETE 697
BLAST of mRNA_Ecto-sp13_S_contig1843.5740.1 vs. uniprot
Match: D7FTQ8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTQ8_ECTSI) HSP 1 Score: 174 bits (441), Expect = 7.710e-41 Identity = 136/403 (33.75%), Postives = 194/403 (48.14%), Query Frame = 1
Query: 16 FLAFFRACFGEDILRDSEKSMVSVVERGDCRTTESVARYLEHGLRVCREEGVKPRDFSLLRGRSALTGERD-DADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVLNFLAPSSIDGGGFGGDGGCGDDGERRSSGLPEYSGPPWADVDTLTSKDAKVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGS-GAGDLSNAIPDELARGATVKL--EDGGQVVHVAGQ-RAVADKVFCAVAESLSEVVPDTVQVVDMKSTGAMRIMATSHAIQEMARAGGADVDEIKMFLVWLEKSLVVQMP--GGNEGKLQAMCQVLRRAVRQWRAHNVSVELSPMLASKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGLELRGQVVDARGQASAQAKLET 1203
F FFR F I +S V + + + A EHGLRVCR++ VK DF LLR R + RD D ++ + R L + D +G+ + VP + + GLPEY P D D T KV Q+WGL V AFD +V+ + + ++LGS GA +L +G VK E G V ++G+ AD V +SL E +PD VQ VDMK TGAMR ++ AI E+A+A G D ++++ W K +++Q+ GG+ G +Q MC L V++WR + V L+ + KA +R+ + AGG + FV +LSE +G LWLDG +L +V D + SAQAKLET
Sbjct: 1093 FSPFFRDHFDVTIRHVPLESAVYISGKAEDGVVHVAAECFEHGLRVCRDDEVKAADFLLLRAR--VRSARDPDGSQYLLPLEVSIKLRRRLRDLGDLYGVVINSVPARSVGLGSXXXXX---------------XXXXGLPEYLCCPGVDTDDNTQDHRKVVQIWGLRDCVVGAFDRVVASLLDN-MEYVVKLGSVGADELKRL----RFKGKNVKYFTEGGVTGVRISGRPHLFADANVSTVLQSLPERLPDKVQCVDMKYTGAMRALSRPWAIDEIAQASGIDQSQVRVTPQWQNKCMLLQVLKLGGDRGAIQGMCTFLEGRVKEWRGQRLVVTLTAEIIDKARKRFFSSGSAGGFHFSSF-FVASLSEEIGEHLWLDGFQLTARV-DPDDRDSAQAKLET 1471
BLAST of mRNA_Ecto-sp13_S_contig1843.5740.1 vs. uniprot
Match: A0A6H5JR78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR78_9PHAE) HSP 1 Score: 159 bits (402), Expect = 4.770e-36 Identity = 131/411 (31.87%), Postives = 190/411 (46.23%), Query Frame = 1
Query: 16 FLAFFRACFGEDILRDSEKSMVSVVERGDCRTTESVARYLEHGLRVCREEGVKPRDFSLLRGRSALTGERDDADLHVFCRTKGMATARSLCKISDCHGICADLVPPTVLNFLAPSSIDGGGFGGDGGCGDDGERRSSGLPEYSGPPWADVDTLTSKDAKVFQLWGLSGSVAPAFDHLVSQRTNRPVNRCLELGSGAGDLSNAIPDELARGATVKLEDGGQVVHVAGQRAVADKVFCAVAESLSEVVPDTVQVVDMKSTGAMRIMATSHAIQEMARAGGADVDEIKMFLVWLEKSLVVQMP--GGNEGKLQAM-------------CQVLRRAVRQWRAHNVSVELSPMLASKAAQRYGRNVVAGGVKDIRYRFVETLSEAVGVDLWLDGLELRGQVVDARGQASAQAKLET 1203
FL FFR F I +S V + + D A EHGLR+CR+ VK DF LLR R T + D + ++ R L + D +G+ V+N + PS +G G G LP+Y P D + T KV Q+WGL V AFD +V+ + ++LG D + + + E G V ++G+ +AD V +S+ EV+PD VQ VDMK TGAMR + AI E+ARA G D ++++ W K +++Q+ GG+ G +Q M C L V++WR + V L+ + KA + + + AG + FV +LSE +G DLWLDG +L + D + SAQAKLET
Sbjct: 1222 FLPFFRDHFDVTIRNVPSESAVCIGKAPD-GVVNVAAECFEHGLRLCRDNDVKAADFLLLRARVRSTRDPDGSQ-YLLPLEVSAKLRRKLRDLGDRYGV--------VINGV-PSRSEGLGSGXX-------XXXXXXLPKYVCCPRVDTEDNTQDHRKVVQIWGLRNCVVGAFDRVVASLLDN-TEYVVKLGPVGADELKGLRFK-GKNVNCFTEGGVTEVRISGRPHLADANISTVLQSMPEVLPDQVQCVDMKCTGAMRAFSRPWAIDEIARASGIDQSQVRVTPQWQNKCMLLQVLKLGGDRGAIQGMSAYLNLKGLNEIRCTFLEGRVKEWRGRRLVVTLTAEIIDKARKCFFSSGSAGEFHFCSF-FVASLSEEIGEDLWLDGFQLTARA-DPDDRDSAQAKLET 1610 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1843.5740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1843.5740.1 >prot_Ecto-sp13_S_contig1843.5740.1 ID=prot_Ecto-sp13_S_contig1843.5740.1|Name=mRNA_Ecto-sp13_S_contig1843.5740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=876bp PVLEGFLAFFRACFGEDILRDSEKSMVSVVERGDCRTTESVARYLEHGLRback to top mRNA from alignment at Ecto-sp13_S_contig1843:200..4581+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1843.5740.1 ID=mRNA_Ecto-sp13_S_contig1843.5740.1|Name=mRNA_Ecto-sp13_S_contig1843.5740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4382bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1843:200..4581+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1843:200..4581+ >mRNA_Ecto-sp13_S_contig1843.5740.1 ID=mRNA_Ecto-sp13_S_contig1843.5740.1|Name=mRNA_Ecto-sp13_S_contig1843.5740.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2628bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1843:200..4581+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |