prot_Ecto-sp13_S_contig18428.5739.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_Ecto-sp13_S_contig18428.5739.1
Unique Nameprot_Ecto-sp13_S_contig18428.5739.1
Typepolypeptide
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length69
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18428.5739.1 vs. uniprot
Match: Q8QKW5_ESV1K (EsV-1-15 n=2 Tax=root TaxID=1 RepID=Q8QKW5_ESV1K)

HSP 1 Score: 111 bits (278), Expect = 7.450e-31
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 0 
Query:    1 MIRLINEAVVVGVVVMLAGYPSGLLASKLLPMKGDDHRPVMYLSLFLTGLSSHLLSEALKINWWLRSR 68
            MIRL+ EAVVVGVV+MLAGYP GLLASKLLPMKGDDHRPVMYLSLFLTGLSSHLL E LKIN W  S+
Sbjct:    1 MIRLVIEAVVVGVVMMLAGYPCGLLASKLLPMKGDDHRPVMYLSLFLTGLSSHLLFEVLKINLWYCSK 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18428.5739.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKW5_ESV1K7.450e-3185.29EsV-1-15 n=2 Tax=root TaxID=1 RepID=Q8QKW5_ESV1K[more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 42..65
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..7
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 8..18
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 66..68
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..26
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..41
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availableTMHMMTMhelixcoord: 42..64
NoneNo IPR availableTMHMMTMhelixcoord: 5..27

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18428contigEcto-sp13_S_contig18428:695..901 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18428.5739.1mRNA_Ecto-sp13_S_contig18428.5739.1Ectocarpus species13 EcNAP12_S_4_19mmRNAEcto-sp13_S_contig18428 695..904 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_Ecto-sp13_S_contig18428.5739.1 ID=prot_Ecto-sp13_S_contig18428.5739.1|Name=mRNA_Ecto-sp13_S_contig18428.5739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MIRLINEAVVVGVVVMLAGYPSGLLASKLLPMKGDDHRPVMYLSLFLTGL
SSHLLSEALKINWWLRSR*
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