mRNA_Ecto-sp13_S_contig18428.5739.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18428.5739.1
Unique NamemRNA_Ecto-sp13_S_contig18428.5739.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18428.5739.1 vs. uniprot
Match: Q8QKW5_ESV1K (EsV-1-15 n=2 Tax=root TaxID=1 RepID=Q8QKW5_ESV1K)

HSP 1 Score: 112 bits (279), Expect = 5.470e-31
Identity = 58/68 (85.29%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    4 MIRLINEAVVVGVVVMLAGYPSGLLASKLLPMKGDDHRPVMYLSLFLTGLSSHLLSEALKINWWLRSR 207
            MIRL+ EAVVVGVV+MLAGYP GLLASKLLPMKGDDHRPVMYLSLFLTGLSSHLL E LKIN W  S+
Sbjct:    1 MIRLVIEAVVVGVVMMLAGYPCGLLASKLLPMKGDDHRPVMYLSLFLTGLSSHLLFEVLKINLWYCSK 68
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18428.5739.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Q8QKW5_ESV1K5.470e-3185.29EsV-1-15 n=2 Tax=root TaxID=1 RepID=Q8QKW5_ESV1K[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18428contigEcto-sp13_S_contig18428:695..904 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size210
Hectar predicted targeting categorysignal peptide
Exons1
Ec32 ortholog descriptionEsV-1-15
Ec32 orthologEc-06_006580.1
Cds size207
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.4393644-CDS-Ecto-sp13_S_contig18428:694..9011681462947.4393644-CDS-Ecto-sp13_S_contig18428:694..901Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18428 695..901 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.450598-UTR-Ecto-sp13_S_contig18428:901..9041681462947.450598-UTR-Ecto-sp13_S_contig18428:901..904Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18428 902..904 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18428.5739.1prot_Ecto-sp13_S_contig18428.5739.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18428 695..901 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18428.5739.1

>prot_Ecto-sp13_S_contig18428.5739.1 ID=prot_Ecto-sp13_S_contig18428.5739.1|Name=mRNA_Ecto-sp13_S_contig18428.5739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=69bp
MIRLINEAVVVGVVVMLAGYPSGLLASKLLPMKGDDHRPVMYLSLFLTGL
SSHLLSEALKINWWLRSR*
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mRNA from alignment at Ecto-sp13_S_contig18428:695..904-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18428.5739.1 ID=mRNA_Ecto-sp13_S_contig18428.5739.1|Name=mRNA_Ecto-sp13_S_contig18428.5739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=210bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18428:695..904- (Ectocarpus species13 EcNAP12_S_4_19m)
GACATGATTCGTTTGATTAATGAGGCCGTCGTTGTTGGCGTGGTCGTGAT
GCTTGCGGGGTATCCTTCTGGCTTGCTTGCATCTAAACTTCTGCCGATGA
AAGGTGATGATCACCGCCCGGTAATGTATCTCAGTCTCTTCCTCACGGGG
CTGTCATCGCACCTGCTTTCTGAAGCGCTCAAGATCAATTGGTGGTTACG
GAGTCGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18428:695..904-

>mRNA_Ecto-sp13_S_contig18428.5739.1 ID=mRNA_Ecto-sp13_S_contig18428.5739.1|Name=mRNA_Ecto-sp13_S_contig18428.5739.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=207bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18428:695..904- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCGTTTGATTAATGAGGCCGTCGTTGTTGGCGTGGTCGTGATGCT
TGCGGGGTATCCTTCTGGCTTGCTTGCATCTAAACTTCTGCCGATGAAAG
GTGATGATCACCGCCCGGTAATGTATCTCAGTCTCTTCCTCACGGGGCTG
TCATCGCACCTGCTTTCTGAAGCGCTCAAGATCAATTGGTGGTTACGGAG
TCGCTGA
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