mRNA_Ecto-sp13_S_contig18427.5738.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18427.5738.1
Unique NamemRNA_Ecto-sp13_S_contig18427.5738.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: A0A6H5L5X9_9PHAE (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5X9_9PHAE)

HSP 1 Score: 206 bits (525), Expect = 1.480e-61
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQAS 297
            GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQ VVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQA+
Sbjct:  217 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQ-VVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQAN 314
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: D7G4T1_ECTSI (Serine/threonine-protein phosphatase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4T1_ECTSI)

HSP 1 Score: 204 bits (520), Expect = 6.830e-61
Identity = 96/97 (98.97%), Postives = 96/97 (98.97%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 291
            GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQ VVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ
Sbjct:  201 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQ-VVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 296
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: A0A7S2D5J7_9STRA (Serine/threonine-protein phosphatase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D5J7_9STRA)

HSP 1 Score: 197 bits (500), Expect = 5.010e-58
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 291
            GLLCDLLWSDPD+DI+GWGENDRGVSFTFGEDIV QFLRRHDLDLICRAHQ VVEDGYEFFARR LVTLFSAPNYCGEFDNAGAMMSVD+TLMCSFQ
Sbjct:  199 GLLCDLLWSDPDKDIVGWGENDRGVSFTFGEDIVAQFLRRHDLDLICRAHQ-VVEDGYEFFARRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQ 294
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: A0A7S3UUT0_HETAK (Serine/threonine-protein phosphatase n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A7S3UUT0_HETAK)

HSP 1 Score: 197 bits (500), Expect = 7.360e-58
Identity = 91/97 (93.81%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 291
            GLLCDLLWSDPD+DI+GWGENDRGVSFTFGEDIV QFLRRHDLDLICRAHQ VVEDGYEFFARR LVTLFSAPNYCGEFDNAGAMMSVD+TLMCSFQ
Sbjct:  205 GLLCDLLWSDPDKDIVGWGENDRGVSFTFGEDIVAQFLRRHDLDLICRAHQ-VVEDGYEFFARRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQ 300
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: H3C7I6_TETNG (SER_THR_PHOSPHATASE domain-containing protein n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C7I6_TETNG)

HSP 1 Score: 189 bits (479), Expect = 1.950e-57
Identity = 83/97 (85.57%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 291
            GLLCDLLWSDPD+D+ GWGENDRGVSFTFG D+V +FL RHDLDLICRAHQ VVEDGYEFFA+RH +TLFSAPNYCGEFDNAG MMSVD+TLMCSFQ
Sbjct:    4 GLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVVEDGYEFFAKRHWITLFSAPNYCGEFDNAGGMMSVDETLMCSFQ 100
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: H3C8T1_TETNG (Protein phosphatase 1, catalytic subunit, beta isoform, like n=2 Tax=Tetraodon nigroviridis TaxID=99883 RepID=H3C8T1_TETNG)

HSP 1 Score: 188 bits (478), Expect = 2.280e-57
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 291
            GLLCDLLWSDPD+D+ GWGENDRGVSFTFG D+V +FL RHDLDLICRAHQ VVEDGYEFFA+R LVTLFSAPNYCGEFDNAG MMSVD+TLMCSFQ
Sbjct:   15 GLLCDLLWSDPDKDVQGWGENDRGVSFTFGADVVSKFLNRHDLDLICRAHQVVVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQ 111
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: A0A7S3GVJ9_9STRA (Serine/threonine-protein phosphatase n=2 Tax=cellular organisms TaxID=131567 RepID=A0A7S3GVJ9_9STRA)

HSP 1 Score: 195 bits (495), Expect = 2.810e-57
Identity = 88/97 (90.72%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 291
            GLLCDLLW+DPD+DI+GWGENDRGVSFTFGED+V QFLRRHDLDLICRAHQ VVEDGYEFFA+R LVT+FSAPNYCGEFDNAGAMMSVDDTLMCSFQ
Sbjct:  199 GLLCDLLWADPDKDIVGWGENDRGVSFTFGEDVVAQFLRRHDLDLICRAHQ-VVEDGYEFFAKRQLVTIFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 294
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: A0A835Z0T8_9STRA (Serine/threonine-protein phosphatase n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0T8_9STRA)

HSP 1 Score: 197 bits (500), Expect = 3.020e-57
Identity = 92/97 (94.85%), Postives = 94/97 (96.91%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 291
            GLLCDLLWSDPDRD IGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQ VVEDGYEFFA+R LVTLFSAPNYCGEFDNAGAMMSVD+TLMCSFQ
Sbjct:  285 GLLCDLLWSDPDRDTIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQ-VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGAMMSVDETLMCSFQ 380
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: A0A2G9UXN1_TELCI (Phosphoprotein phosphatase 1 domain protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9UXN1_TELCI)

HSP 1 Score: 186 bits (473), Expect = 8.570e-57
Identity = 84/100 (84.00%), Postives = 91/100 (91.00%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQASF 300
            GLLCDLLWSDPD+D+ GWGENDRGVSFTFG D+V +FL RHDLDLICRAHQ VVEDGYEFFA+R LVTLFSAPNYCGEFDNAG MMSVD+TLMCSFQ  +
Sbjct:   17 GLLCDLLWSDPDKDVTGWGENDRGVSFTFGPDVVAKFLTRHDLDLICRAHQ-VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQVCY 115
[Close]
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Match: A0A3P6R9L5_CYLGO (SER_THR_PHOSPHATASE domain-containing protein (Fragment) n=1 Tax=Cylicostephanus goldi TaxID=71465 RepID=A0A3P6R9L5_CYLGO)

HSP 1 Score: 186 bits (472), Expect = 9.120e-57
Identity = 84/97 (86.60%), Postives = 90/97 (92.78%), Query Frame = 1 
Query:    1 GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAHQQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQ 291
            GLLCDLLWSDPD+D+ GWGENDRGVSFTFG D+V +FL RHDLDLICRAHQ VVEDGYEFFA+R LVTLFSAPNYCGEFDNAG MMSVD+TLMCSFQ
Sbjct:    5 GLLCDLLWSDPDKDVTGWGENDRGVSFTFGPDVVAKFLNRHDLDLICRAHQ-VVEDGYEFFAKRQLVTLFSAPNYCGEFDNAGGMMSVDETLMCSFQ 100
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18427.5738.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5X9_9PHAE1.480e-6197.98Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
D7G4T1_ECTSI6.830e-6198.97Serine/threonine-protein phosphatase n=1 Tax=Ectoc... [more]
A0A7S2D5J7_9STRA5.010e-5893.81Serine/threonine-protein phosphatase n=1 Tax=Flore... [more]
A0A7S3UUT0_HETAK7.360e-5893.81Serine/threonine-protein phosphatase n=2 Tax=Chatt... [more]
H3C7I6_TETNG1.950e-5785.57SER_THR_PHOSPHATASE domain-containing protein n=2 ... [more]
H3C8T1_TETNG2.280e-5786.60Protein phosphatase 1, catalytic subunit, beta iso... [more]
A0A7S3GVJ9_9STRA2.810e-5790.72Serine/threonine-protein phosphatase n=2 Tax=cellu... [more]
A0A835Z0T8_9STRA3.020e-5794.85Serine/threonine-protein phosphatase n=2 Tax=Tribo... [more]
A0A2G9UXN1_TELCI8.570e-5784.00Phosphoprotein phosphatase 1 domain protein n=1 Ta... [more]
A0A3P6R9L5_CYLGO9.120e-5786.60SER_THR_PHOSPHATASE domain-containing protein (Fra... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18427contigEcto-sp13_S_contig18427:478..2183 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score206.1
Seed ortholog evalue1.1e-50
Seed eggNOG ortholog2880.D7G4T1
Preferred nameGLC7
Model size806
KEGG koko:K06269
KEGG Pathwayko03015,ko04022,ko04024,ko04113,ko04114,ko04218,ko04261,ko04270,ko04390,ko04510,ko04611,ko04720,ko04728,ko04750,ko04810,ko04910,ko04921,ko04931,ko05031,ko05034,ko05168,ko05205,map03015,map04022,map04024,map04113,map04114,map04218,map04261,map04270,map04390,map04510,map04611,map04720,map04728,map04750,map04810,map04910,map04921,map04931,map05031,map05034,map05168,map05205
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000022,GO:0000070,GO:0000075,GO:0000076,GO:0000077,GO:0000122,GO:0000164,GO:0000226,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000785,GO:0000790,GO:0000793,GO:0000794,GO:0000819,GO:0000903,GO:0000910,GO:0001400,GO:0003006,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005730,GO:0005737,GO:0005815,GO:0005816,GO:0005847,GO:0005849,GO:0005856,GO:0005933,GO:0005935,GO:0005937,GO:0005938,GO:0005975,GO:0005976,GO:0005977,GO:0006073,GO:0006091,GO:0006109,GO:0006112,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006325,GO:0006342,GO:0006351,GO:0006353,GO:0006355,GO:0006357,GO:0006364,GO:0006366,GO:0006369,GO:0006396,GO:0006464,GO:0006470,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006950,GO:0006974,GO:0006986,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007052,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007094,GO:0007114,GO:0007163,GO:0007346,GO:0008104,GO:0008150,GO:0008152,GO:0008287,GO:0008360,GO:0008608,GO:0009058,GO:0009059,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009889,GO:0009890,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010562,GO:0010564,GO:0010604,GO:0010605,GO:0010629,GO:0010638,GO:0010639,GO:0010948,GO:0010965,GO:0015630,GO:0015980,GO:0016043,GO:0016049,GO:0016070,GO:0016072,GO:0016311,GO:0016458,GO:0016569,GO:0016570,GO:0016576,GO:0016787,GO:0016788,GO:0016791,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019725,GO:0019953,GO:0019954,GO:0022402,GO:0022413,GO:0022414,GO:0022603,GO:0022604,GO:0022613,GO:0023052,GO:0030010,GO:0030071,GO:0030139,GO:0030154,GO:0030427,GO:0030428,GO:0030435,GO:0030437,GO:0030846,GO:0030847,GO:0031134,GO:0031297,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031399,GO:0031401,GO:0031410,GO:0031570,GO:0031577,GO:0031974,GO:0031981,GO:0031982,GO:0032153,GO:0032268,GO:0032270,GO:0032465,GO:0032467,GO:0032502,GO:0032505,GO:0032774,GO:0032878,GO:0032879,GO:0032880,GO:0032954,GO:0032956,GO:0032970,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0033554,GO:0034293,GO:0034470,GO:0034501,GO:0034502,GO:0034506,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0035303,GO:0035304,GO:0035306,GO:0035307,GO:0035838,GO:0035839,GO:0035966,GO:0036211,GO:0040007,GO:0040029,GO:0042221,GO:0042254,GO:0042578,GO:0042592,GO:0042995,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043934,GO:0043935,GO:0044042,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044463,GO:0044464,GO:0044703,GO:0044848,GO:0045005,GO:0045786,GO:0045787,GO:0045814,GO:0045839,GO:0045840,GO:0045841,GO:0045842,GO:0045892,GO:0045930,GO:0045931,GO:0045934,GO:0045937,GO:0046483,GO:0048285,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048646,GO:0048856,GO:0048869,GO:0048878,GO:0050000,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051129,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051211,GO:0051231,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051253,GO:0051276,GO:0051286,GO:0051301,GO:0051302,GO:0051303,GO:0051310,GO:0051315,GO:0051321,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051784,GO:0051785,GO:0051983,GO:0051984,GO:0051985,GO:0055082,GO:0055114,GO:0060255,GO:0060341,GO:0060623,GO:0061587,GO:0061638,GO:0062033,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070940,GO:0071173,GO:0071174,GO:0071459,GO:0071704,GO:0071840,GO:0071944,GO:0072357,GO:0072690,GO:0080090,GO:0090068,GO:0090231,GO:0090233,GO:0090266,GO:0090304,GO:0097659,GO:0097708,GO:0098687,GO:0098813,GO:0099568,GO:0110020,GO:0120025,GO:0120038,GO:0140014,GO:0140096,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1901900,GO:1901901,GO:1901970,GO:1901976,GO:1901977,GO:1901987,GO:1901988,GO:1901989,GO:1901990,GO:1901991,GO:1901992,GO:1902099,GO:1902100,GO:1902101,GO:1902340,GO:1902412,GO:1902426,GO:1902494,GO:1902679,GO:1902850,GO:1903046,GO:1903047,GO:1903066,GO:1903068,GO:1903293,GO:1903379,GO:1903436,GO:1903438,GO:1903490,GO:1903499,GO:1903501,GO:1903504,GO:1903506,GO:1903507,GO:1903827,GO:1903829,GO:1905213,GO:1905818,GO:1905819,GO:1905820,GO:1990567,GO:1990758,GO:2000112,GO:2000113,GO:2000114,GO:2000431,GO:2000433,GO:2000769,GO:2000771,GO:2000782,GO:2000784,GO:2000816,GO:2001141,GO:2001251,GO:2001252
Exons2
EggNOG free text desc.phosphoprotein phosphatase activity
EggNOG OGsCOG0639@1,KOG0374@2759
EC3.1.3.16
Cds size429
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03019,ko03021,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.37329-CDS-Ecto-sp13_S_contig18427:477..6301681462947.37329-CDS-Ecto-sp13_S_contig18427:477..630Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18427 478..630 +
1681462947.3873956-CDS-Ecto-sp13_S_contig18427:1530..18061681462947.3873956-CDS-Ecto-sp13_S_contig18427:1530..1806Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18427 1531..1806 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.4064615-UTR-Ecto-sp13_S_contig18427:1806..21831681462947.4064615-UTR-Ecto-sp13_S_contig18427:1806..2183Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18427 1807..2183 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18427.5738.1prot_Ecto-sp13_S_contig18427.5738.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18427 478..1806 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18427.5738.1

>prot_Ecto-sp13_S_contig18427.5738.1 ID=prot_Ecto-sp13_S_contig18427.5738.1|Name=mRNA_Ecto-sp13_S_contig18427.5738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=143bp
GLLCDLLWSDPDRDIIGWGENDRGVSFTFGEDIVVQFLRRHDLDLICRAH
QQVVEDGYEFFARRHLVTLFSAPNYCGEFDNAGAMMSVDDTLMCSFQASF
SMLVCRKHYATHHMITPVTFERVRRYGYEEKLDLFSRSYWSF*
back to top

mRNA from alignment at Ecto-sp13_S_contig18427:478..2183+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18427.5738.1 ID=mRNA_Ecto-sp13_S_contig18427.5738.1|Name=mRNA_Ecto-sp13_S_contig18427.5738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1706bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18427:478..2183+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTTGTTGTGTGACCTGCTCTGGTCGGATCCTGACCGCGACATCATCGG
GTGGGGAGAGAACGACAGAGGTGTTTCATTCACCTTTGGTGAGGACATCG
TCGTGCAGTTCCTCAGGAGACATGATCTAGATCTCATCTGCAGGGCCCAC
CAGGTATGTATTTGGTACAGTAACAACAATATTAGACAGGCGCTGTGTTA
TTGCAAGCATCGACCGCGCTTCACAGCCGACTGACAGCAGACTGACCGAT
GGAAAGACGTCAGTCTCACATCTCCTAGCGCATGAGTGTGTGTGTGTTTT
TCCGACGTAGTATTTTGTTGCTGCAGCTGTCCGCAGCAGATTCGTGTGTT
TTTATTGTTGGCATCGACCGCGCTAACCGACTGACAAATGAAATGACGTC
AGTCTCAGTTCGGGTGAAAACGAACATTTCTTAAGGCCATTGAGTGGAAC
CCTGGGAGGGGGCATCATGGGGGAGGGTAAGCAGGTCTCCTGATGAAAGA
CAAGGACGGTAGCTATCAGACGAAAACTGCACGCGTCTACCAAGGCTGCT
TGCTACCTTTTACTCGATTTCGTGGAGTTCTTTCACCTTTATTATACTCA
TCATCGTTTTGACTACATTTTTTCGGCAGTTTTTCTGTGGCCCTGCGTCG
TTTGTGGTCAAGGTCATCTGGCTCGAACCTGTTGCTGTCTTACACGCCAT
GATTTGTGTGTGTGCTTGTCATCGTTTTGGGCCTTCCGACTTTTGCCTTT
GAACAACGTCCTCTAGTGCGAGTGCAGCGTCACTCCGGTTCCAGGTAGAC
GGCGTCGAAGGGCTTACTTCATGGCTTACTTCATCATCTCCCGAATGTTC
TTACCCACGACCTTCCTTGCATGAGCAGGTTGGCGTCTCCTGATGTACAG
TACTTTCCTTTGGGTGTTGATGCTGTCTAACGTGGCTGGATGTGATGTGA
CCTTGTGGTTGAAAACGATGTGACTGGTATCGATTTGTCGGACATTGATG
TCACTGGCATTGTGTGTGAGTTGATGTGACTGACGTTGATGTGATGTGGC
GAGCAGGTGGTGGAGGATGGTTACGAGTTCTTTGCGCGGCGCCACCTAGT
GACCCTCTTCTCAGCGCCTAACTACTGCGGGGAGTTTGACAACGCTGGGG
CCATGATGAGCGTGGACGACACACTCATGTGCTCTTTCCAGGCAAGTTTC
TCGATGTTGGTGTGCCGCAAACATTACGCAACACATCACATGATAACACC
CGTGACATTTGAGAGGGTGCGAAGATATGGGTATGAAGAAAAACTTGACC
TTTTCAGTAGAAGCTATTGGTCTTTCTAGTCTTCTAGTCGATGTCGGTTT
TCCCCGGTTACAAGAGGAGATAATAAACGAGCCTCTTCCAATTTAGTCTA
AAGGAAGAGTTTCCTCTACGTGGTGAGGTGGGTGTGGAGCTACATTGTGG
CGAACTTTTGCCACTGAAAAGCGTTGTTTTTTTCAGCAAGCTTGTACGTA
CGTCCCGTCTTTGTGGAGTGCAGGTGCCGATGAGGAGCGGCACAAGTAGT
GTACTGTACCCAGACCGGACCCATTTTCTTGTCTCTCGTGCTATACCTTA
CCCTGTCCTGTTGTGGACGAGAAATCCCCCCCCCCTGCTTCCATGACTGC
GTGTGCTGCCTCGTGTCGTTTGTGGCGCCGCACAACAGCATTACCAAGAA
AGAACG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18427:478..2183+

>mRNA_Ecto-sp13_S_contig18427.5738.1 ID=mRNA_Ecto-sp13_S_contig18427.5738.1|Name=mRNA_Ecto-sp13_S_contig18427.5738.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=429bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18427:478..2183+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTTTGTTGTGTGACCTGCTCTGGTCGGATCCTGACCGCGACATCATCGG
GTGGGGAGAGAACGACAGAGGTGTTTCATTCACCTTTGGTGAGGACATCG
TCGTGCAGTTCCTCAGGAGACATGATCTAGATCTCATCTGCAGGGCCCAC
CAGCAGGTGGTGGAGGATGGTTACGAGTTCTTTGCGCGGCGCCACCTAGT
GACCCTCTTCTCAGCGCCTAACTACTGCGGGGAGTTTGACAACGCTGGGG
CCATGATGAGCGTGGACGACACACTCATGTGCTCTTTCCAGGCAAGTTTC
TCGATGTTGGTGTGCCGCAAACATTACGCAACACATCACATGATAACACC
CGTGACATTTGAGAGGGTGCGAAGATATGGGTATGAAGAAAAACTTGACC
TTTTCAGTAGAAGCTATTGGTCTTTCTAG
back to top