mRNA_Ecto-sp13_S_contig18426.5737.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18426.5737.1
Unique NamemRNA_Ecto-sp13_S_contig18426.5737.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: D7FNQ6_ECTSI (Abhydrolase_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ6_ECTSI)

HSP 1 Score: 405 bits (1041), Expect = 9.230e-141
Identity = 208/225 (92.44%), Postives = 213/225 (94.67%), Query Frame = 1
Query:    1 MRLLSALASVLVAVAPFSQSFIVYPSSSRQHAPISGGTMSATRTSAG--QPAGEAGAVTVPGKSQLVVRNEEEGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNVR 669
            MRLLSA A VLVAVAPFSQSFIVYPSSS QHAPISGGTMS+T TS+   QPAGEAGAVTVPGKSQLVVRNEEEGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSREL ENTYR    FDFAGCGQSGGDWRYAGYD+ELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQW+QLE+TGSFEWNVR
Sbjct:    1 MRLLSAFALVLVAVAPFSQSFIVYPSSSTQHAPISGGTMSSTSTSSSAVQPAGEAGAVTVPGKSQLVVRNEEEGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSRELSENTYR----FDFAGCGQSGGDWRYAGYDKELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWNQLEETGSFEWNVR 221          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A6H5LKM1_9PHAE (Abhydrolase_4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKM1_9PHAE)

HSP 1 Score: 169 bits (428), Expect = 1.250e-49
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1
Query:  424 RELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNVR 669
            RELGDLRAVVLRLR+LGWNVDCVLGHSKGAAAVLRYGE FDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNVR
Sbjct:    5 RELGDLRAVVLRLRDLGWNVDCVLGHSKGAAAVLRYGEKFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNVR 86          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A835ZJ96_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZJ96_9STRA)

HSP 1 Score: 161 bits (407), Expect = 1.850e-45
Identity = 81/153 (52.94%), Postives = 102/153 (66.67%), Query Frame = 1
Query:  208 EEGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNV 666
            + GYDL  +L +K   SK + V+CHGL S    +V A ++  L +   R    FDFAG G SGG+W  +GYDRE+ DLR VV  LR  GW V  V+GHSKGA AV++Y   +DDVPLVV VAGRFD S+TP SR+TEEQW QL + G+ +W V
Sbjct:   16 DRGYDLAALLDLKNAKSKDIVVVCHGLISDKRRSVAATLAEALQQ---RNLCRFDFAGNGDSGGEWTLSGYDREMEDLRGVVQHLRGEGWAVTAVVGHSKGACAVIKYAAKYDDVPLVVPVAGRFDMSQTPASRYTEEQWRQLREEGATQWVV 165          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A1Y1YDC5_9FUNG (Alpha/beta-hydrolase n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YDC5_9FUNG)

HSP 1 Score: 113 bits (282), Expect = 9.840e-27
Identity = 73/164 (44.51%), Postives = 93/164 (56.71%), Query Frame = 1
Query:  184 SQLVVRNE---EEGYDLNGVLTVKRE-DSKSVWVLCHGLCSSCEGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLRE-LGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEW 660
            S LV R E    +G  L+ VLT K    +  V VLCHG  +    T+   ++ +LP N      A DF G G S G  RY  Y  E+ DL+ +V  LRE L  NV  +LGHSKGA+ VL Y  +  +VPL++NVAGR+D SE P  RFT  Q  +LE+ GSF W
Sbjct:    6 STLVERIEVSTPQGISLSAVLTKKSTAPADQVLVLCHGFLNHSNSTIIRGLTNQLPFNVC----AIDFRGNGFSKGTTRYGNYLEEVEDLKYLVEHLREELHLNVLGILGHSKGASVVLLYASSHHEVPLIINVAGRYDMSELPMHRFTPGQRKELEERGSFVW 165          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A250XCV5_9CHLO (Hydrolase_4 domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XCV5_9CHLO)

HSP 1 Score: 109 bits (272), Expect = 3.110e-25
Identity = 65/146 (44.52%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  256 SKSVWVLCHGLCSSCEGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLRE-LGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNVR--VGSVV 684
            S+ V +LCHG  S+ +  + A +++EL        R FDFAG G+S G +++A Y  E+ DLR  VL +RE L   V  ++GHSKG   VL YG  FDD+P +VNVAGRFD +     R+ EE   +L+K G  E  VR  VGS V
Sbjct:   48 SQEVVILCHGYASTKDSPIIAHLAKELAGRQLSTLR-FDFAGNGESEGVFQFANYMSEVQDLRCAVLHVREVLHKTVTAIVGHSKGGNVVLLYGAAFDDIPFIVNVAGRFDLTRGIVERYGEETIAKLQKLGQVEMEVRTDVGSKV 192          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A6U2HVN7_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A6U2HVN7_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 8.820e-25
Identity = 59/138 (42.75%), Postives = 83/138 (60.14%), Query Frame = 1
Query:  256 SKSVWVLCHGLCSSCEGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLR-ELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNV 666
            SK   VLCHGL SS +  +   ++REL  +     R FDF+G G+S G +  +GYD+E+ D+ + V   R ELG  V  + GHSKG   VL Y   +DDVPLVVN+AGRFD +   + RF E+   +LE+ G  + ++
Sbjct:    2 SKRCVVLCHGLASSKDSALMCALARELSASGLASLR-FDFSGNGESQGVFSISGYDKEVADVASAVAHARGELGLEVVAIAGHSKGGTVVLMYSGQYDDVPLVVNIAGRFDCTRGVKERFGEDALAKLERLGQVKLSM 138          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A397J2H1_9GLOM (Uncharacterized protein n=1 Tax=Diversispora epigaea TaxID=1348612 RepID=A0A397J2H1_9GLOM)

HSP 1 Score: 103 bits (258), Expect = 2.540e-23
Identity = 59/151 (39.07%), Postives = 86/151 (56.95%), Query Frame = 1
Query:  208 EEGYDLNGVLTVKRED-SKSVWVLCHGLCSSCEGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLRE-LGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSF 654
            E+G+ L+G L +K E     + + CHGL ++    +   V   +  ++     +FDF G G+S G   +  Y  E+ +LR ++  +R  L   V C+ GHSKGA  VL YG  F+DVPL++N++GR+D S  P   FT EQ DQL  TGSF
Sbjct:   11 EQGFKLHGTLHLKNETLCDDIIIFCHGLLNTRNSNIIQSVINRIKLSSV----SFDFQGNGESEGMTNFGNYAEEVENLRCIISYVRSTLKRKVLCICGHSKGAIVVLMYGSKFNDVPLIINISGRYDHSPNP-PYFTSEQIDQLRTTGSF 156          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A1Y1Z0T0_9FUNG (Esterase/lipase/thioesterase family protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1Z0T0_9FUNG)

HSP 1 Score: 103 bits (257), Expect = 3.560e-23
Identity = 60/151 (39.74%), Postives = 81/151 (53.64%), Query Frame = 1
Query:  211 EGYDLNGVLTVKREDSKSVWVLCHGLCSSCEGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLRELG-WNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEW 660
            EG  L   L  K  D   V V+CHG+  +        +S+ LP +T R    FDF G G S G  +Y  Y  E+ DLRAV+   R +  +NV+C++GHSKG + VL YG  ++DV L+VNV+ R+    TP  RF  +    LE  G F W
Sbjct:   17 EGLSLGATLNYKSSDE--VIVICHGMLDTRRSNAVNSLSQLLPYSTLR----FDFRGNGDSDGRTKYGNYYEEVEDLRAVIEYARNVRKFNVNCIIGHSKGGSVVLLYGSKYNDVSLIVNVSARYFLGRTPVRRFGPDNLSLLETQGWFVW 161          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A433P8Y5_9FUNG (Alpha/Beta hydrolase protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433P8Y5_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 4.730e-23
Identity = 60/133 (45.11%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  271 VLCHGLCSSCEGTV-PAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEWNV 666
            +L HGL ++    +  A     +P   Y    + DF G G SGG   YA Y  E   LR VVL  R LG+ V  ++GHSKGAAA L Y    +DVPLVVNV+GRFD +  P  RFT+EQ  ++E+ GSF W  
Sbjct:   53 LLSHGLLNTRHSRIIRALAGPFIP---YASVLSLDFPGNGSSGGQTSYANYHAEAQVLRHVVLYTRSLGYYVAGIVGHSKGAAATLLYAAEHNDVPLVVNVSGRFDHTRAPAIRFTKEQKREMEEKGSFVWKT 182          
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Match: A0A433QCX3_9FUNG (Alpha/Beta hydrolase protein n=1 Tax=Jimgerdemannia flammicorona TaxID=994334 RepID=A0A433QCX3_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 4.990e-23
Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 1
Query:  265 VWVLCHGLCSSCEGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAVVLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETPRSRFTEEQWDQLEKTGSFEW 660
            ++VLCHGL ++    +   ++  L   T      FDF G G S G   Y  Y+ E+  L  VVL  R LG+ V  + GHSKGAA VL Y   + DVPLVVN+A R+D ++ P  RFT +Q  +LE+ GSF W
Sbjct:   54 LFVLCHGLLNARYSRIVRTMATALLPTT--SVLVFDFQGNGSSTGTTNYGNYEDEVHALHHVVLHTRSLGYRVVGIAGHSKGAADVLLYASQYGDVPLVVNIAARYDHTQAPIDRFTADQRRELEEKGSFVW 183          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18426.5737.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNQ6_ECTSI9.230e-14192.44Abhydrolase_4 domain-containing protein n=1 Tax=Ec... [more]
A0A6H5LKM1_9PHAE1.250e-4997.56Abhydrolase_4 domain-containing protein n=1 Tax=Ec... [more]
A0A835ZJ96_9STRA1.850e-4552.94Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A1Y1YDC5_9FUNG9.840e-2744.51Alpha/beta-hydrolase n=1 Tax=Basidiobolus meristos... [more]
A0A250XCV5_9CHLO3.110e-2544.52Hydrolase_4 domain-containing protein n=1 Tax=Chla... [more]
A0A6U2HVN7_9CHLO8.820e-2542.75Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A397J2H1_9GLOM2.540e-2339.07Uncharacterized protein n=1 Tax=Diversispora epiga... [more]
A0A1Y1Z0T0_9FUNG3.560e-2339.74Esterase/lipase/thioesterase family protein n=1 Ta... [more]
A0A433P8Y5_9FUNG4.730e-2345.11Alpha/Beta hydrolase protein n=1 Tax=Endogone sp. ... [more]
A0A433QCX3_9FUNG4.990e-2343.18Alpha/Beta hydrolase protein n=1 Tax=Jimgerdemanni... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18426contigEcto-sp13_S_contig18426:563..3360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score410.2
Seed ortholog evalue6.2e-112
Seed eggNOG ortholog2880.D7FNQ6
Model size684
KEGG koko:K02946,ko:K06889
KEGG Pathwayko03010,map03010
KEGG ModuleM00178,M00179
Hectar predicted targeting categorychloroplast
Exons4
EggNOG free text desc.thiolester hydrolase activity
EggNOG OGsCOG1073@1,KOG4667@2759
Cds size684
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.3020363-CDS-Ecto-sp13_S_contig18426:562..9271681462947.3020363-CDS-Ecto-sp13_S_contig18426:562..927Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18426 563..927 +
1681462947.3137507-CDS-Ecto-sp13_S_contig18426:1762..18201681462947.3137507-CDS-Ecto-sp13_S_contig18426:1762..1820Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18426 1763..1820 +
1681462947.3263752-CDS-Ecto-sp13_S_contig18426:2428..25131681462947.3263752-CDS-Ecto-sp13_S_contig18426:2428..2513Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18426 2429..2513 +
1681462947.3434508-CDS-Ecto-sp13_S_contig18426:3184..33601681462947.3434508-CDS-Ecto-sp13_S_contig18426:3184..3360Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18426 3185..3360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18426.5737.1prot_Ecto-sp13_S_contig18426.5737.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18426 563..3360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18426.5737.1

>prot_Ecto-sp13_S_contig18426.5737.1 ID=prot_Ecto-sp13_S_contig18426.5737.1|Name=mRNA_Ecto-sp13_S_contig18426.5737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=228bp
MRLLSALASVLVAVAPFSQSFIVYPSSSRQHAPISGGTMSATRTSAGQPA
GEAGAVTVPGKSQLVVRNEEEGYDLNGVLTVKREDSKSVWVLCHGLCSSC
EGTVPAFVSRELPENTYRQKRAFDFAGCGQSGGDWRYAGYDRELGDLRAV
VLRLRELGWNVDCVLGHSKGAAAVLRYGETFDDVPLVVNVAGRFDTSETP
RSRFTEEQWDQLEKTGSFEWNVRVGSVV
back to top

mRNA from alignment at Ecto-sp13_S_contig18426:563..3360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18426.5737.1 ID=mRNA_Ecto-sp13_S_contig18426.5737.1|Name=mRNA_Ecto-sp13_S_contig18426.5737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2798bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18426:563..3360+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACTCCTTTCCGCCCTTGCTTCAGTGCTAGTGGCAGTCGCGCCTTT TTCCCAGTCGTTCATCGTGTACCCTTCATCATCACGGCAACACGCGCCGA TCAGCGGCGGAACGATGTCAGCTACGAGAACATCAGCAGGGCAACCGGCG GGGGAAGCAGGAGCTGTCACGGTACCAGGGAAATCGCAGCTGGTGGTCAG GAATGAGGAAGAGGGCTATGATCTGAATGGCGTGCTGACGGTGAAACGAG AGGATTCTAAGTCGGTGTGGGTTCTTTGCCACGGGCTCTGCTCGAGCTGC GAAGGCACGGTTCCTGCATTTGTTAGCCGAGAGCTGCCGGAGAACACCTA CAGGCAAAAGAGAGCGTCGGTGTTTGGTGTTTTTGGGAGACTTTGGTGGC ACATCAGCACAGCTAGTAGGCAGTGCACCCTTATGTTTCCATCGCGAAGT TGTCTAATGCATCCTCGACTTAAATCTGTCTATGGGTAGAGATGAATTTG TATTGTTGTTGCGGTACACGAAGTAGGAGGATAGTGTACGGGAGTCTACT TCTGTGAGTCCTATGGAGTGGTGTCTCTACCCCCGCACGGTCTTCCGCGC TACAGTATTTTGCGAAGGTGCAATCAAGAAGCGGTTACATGGGTAGATAA TAGGTGCACCAGCACCAATTGGGCCATAGAGCAGGTTACTGCTTGCCGCC ACTCTACTCCAGCCCTGCTTTCCCCCCATCATGATAGCTACGAAAGAAGC GTACGATATCGTGTATGTTGTTCAGAGACCCAAACTTATTTTCTTTAGAA TCATGCGAGAGCAGTGGGCAGAAGAGTGGCGGCCACCCGAGTAACATGAG GCAAGGCCTGTCCGTCTTGCAAGAGTCGGAGTCCCCAACCGTGTTGCTTG ATGCCTCTGGGGTAGAAGGTAGTGACAGCAATGCCTCCATTGATTGGTCC TGCGCATACGTAATCGCCCGCTGCTTATGAGCAACAGAGGGCTGGCCGCT TGTTTGCCAAGGCGCTCTACTCCAAAGTGTCCCGACCAACTCCTTACCAG AGGGCTTGGTGGGAGCGAGGGAAGGGAAGGAGAGAATTCCCCAACTTCGA GGAAGAACCGCATGTATCGCATCCCTATCCTTGGCGTTTCTGATGACATC TACGATATTCCTACTGACATCCCCGCCTTTTGTCTTCTCTCTTTTCGCAG ATTCGACTTTGCCGGATGCGGGCAGTCCGGGGGGGACTGGAGGTACGCCG GCTACGACGTAAGTGGTCGGCGTTCGTAGCAATGGCACGCCATGAAGGCC TGTGTGTTATGTGAAGATATTGAAAAAGTTGTTTGGCATGAGATTGTGTT GGTCAAGCAAGCACCAGGCAGACTCTCCGGGAGCAACTCTGTCCAGCAGA TATTTCCTCGCGGAAGGCAAGAGAGAGAGAGAGAGAGCGTTGTCGGGGTG TTCCCTCTGTGCCCCCGTGCGGTGGGCAAGCCCCGTAATCACTGCTGCTC TCTCAGTTCCTTTGACCACACGGGGAGAATTTTTCCGTGACTATTTGCCC GCCACTCCAGCCCGCTACCGCTCGCCCGCACAACATCCTCTTCGTATTCA CGAGCAGTATAGTACATCAAGACGAGAGGGTATTGCCTCTTTTCGAGGTG TCTTGCCAGATCCTTTCACGCACGACCCCCCCCCCCCACCTCCCGGTACC AACAAGAGACGAGACGTACGGTAGTGTTCGAGAAATGGAGGGTATTGAGC AAGGGCAAGGGGCGACGTGCCGCCAGTTTTGGTTTCGAGAATTGACGCTG CTCTGCTACCATACTATCTCCCAACACCGATGTGTGTTTTATGTGCGTAT GATAATGGATTCCCAGAGAGAACTGGGCGACCTGCGAGCTGTTGTGCTTC GGCTAAGGGAGCTCGGGTGGAATGTGGACTGCGTTTTGGGCCATTCGAAG GGTGAGTGGGCCAGAACTTCTCGGCCGCGTGTTGGAAAAGGGGTGCATCC AGGGGTAAAGAACAACATGGCACGGATCCTCCTACTTTGCGTACCTCCGC ACGGAAGAGCTCGAGGGCTTTCGAGAGAAGTAAAAATCGGTTTGGATTTC GTGCGACATGGAAGCGATGGGTTGTCGACAAAGATTGCCTTGTCTCCACT CTGTTGTAAAACTTTATTACAGAAAACGAAACGTCCCCCTTGAAGCCCCC GGTGCTGTTCAGAGTAAATGCCCAAGCTCCCCCCACCACTAGATGCAAGG ATGGTTCAGACTTCACCATGCAGTTATGTGAACCCTTCTTTTTGGCGTGA CCCAGCAACTCTGCGTTCTGCTCCAAGCGACCGACCTGCTCGAAAAAGCT TCGAGTCATCGTCTGGTTTGTCTAGATATCCCTGCGTTACCCCGACTCGC AATCACACTTTACCTGAAATGAACCCCCTCGACTCTCAAGTGAATTGTCG CTCCACTGCCCGCCAAAACTGGCATGTGGGTATATCCTTTGTTGGATGGA TTGCTGCTGCCTCGCCACGTTTAATGTCGCTCTACAGCAAAGCGCACGTT TACCAATATTGTAATGGTTGGTGAAGTGAACAACTTTGTGCCTCGCGATT CTTGGTTTGAACGTAAACGCAGGTGCTGCGGCCGTGTTGCGGTACGGCGA GACGTTCGACGACGTCCCGCTGGTGGTGAACGTGGCGGGACGATTCGACA CGAGTGAGACCCCTCGATCACGCTTCACGGAGGAGCAGTGGGACCAGCTA GAGAAGACGGGATCTTTCGAGTGGAATGTCAGGGTAGGTAGTGTTGTC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18426:563..3360+

>mRNA_Ecto-sp13_S_contig18426.5737.1 ID=mRNA_Ecto-sp13_S_contig18426.5737.1|Name=mRNA_Ecto-sp13_S_contig18426.5737.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=684bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18426:563..3360+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGACTCCTTTCCGCCCTTGCTTCAGTGCTAGTGGCAGTCGCGCCTTT
TTCCCAGTCGTTCATCGTGTACCCTTCATCATCACGGCAACACGCGCCGA
TCAGCGGCGGAACGATGTCAGCTACGAGAACATCAGCAGGGCAACCGGCG
GGGGAAGCAGGAGCTGTCACGGTACCAGGGAAATCGCAGCTGGTGGTCAG
GAATGAGGAAGAGGGCTATGATCTGAATGGCGTGCTGACGGTGAAACGAG
AGGATTCTAAGTCGGTGTGGGTTCTTTGCCACGGGCTCTGCTCGAGCTGC
GAAGGCACGGTTCCTGCATTTGTTAGCCGAGAGCTGCCGGAGAACACCTA
CAGGCAAAAGAGAGCATTCGACTTTGCCGGATGCGGGCAGTCCGGGGGGG
ACTGGAGGTACGCCGGCTACGACAGAGAACTGGGCGACCTGCGAGCTGTT
GTGCTTCGGCTAAGGGAGCTCGGGTGGAATGTGGACTGCGTTTTGGGCCA
TTCGAAGGGTGCTGCGGCCGTGTTGCGGTACGGCGAGACGTTCGACGACG
TCCCGCTGGTGGTGAACGTGGCGGGACGATTCGACACGAGTGAGACCCCT
CGATCACGCTTCACGGAGGAGCAGTGGGACCAGCTAGAGAAGACGGGATC
TTTCGAGTGGAATGTCAGGGTAGGTAGTGTTGTC
back to top