prot_Ecto-sp13_S_contig18424.5736.1 (polypeptide) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_Ecto-sp13_S_contig18424.5736.1
Unique Name	prot_Ecto-sp13_S_contig18424.5736.1
Type	polypeptide
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Sequence length	144

Homology

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BLAST of mRNA_Ecto-sp13_S_contig18424.5736.1 vs. uniprot
Match: A0A6H5KG61_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG61_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 1.320e-89
Identity = 130/144 (90.28%), Postives = 132/144 (91.67%), Query Frame = 0

Query:    1 RSKEVPGTDWWALRDYPPPDPGMARLCPRLWQAWVAGLIAGSMFLLEYDIWVYAGFVAALFLATAFIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAISFYWAFFFLPFADFVVGVDTFNKHDAEYKVLRERSAFVSRAVGW 144
            RSKEVPGTDWWALRDYPPPDPG ARLCPRLWQAWVAGLIAGSMFLLE+DIWVY GFVA+LFL TA IPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAISFYWAFFFLPFADFVVGVDTFNK DAEYKVLRER  F  R   W
Sbjct:   19 RSKEVPGTDWWALRDYPPPDPGTARLCPRLWQAWVAGLIAGSMFLLEFDIWVYVGFVASLFLGTAVIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWF--RIASW 160

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig18424.5736.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig18424.5736.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5KG61_9PHAE	1.320e-89	90.28	FA_desaturase domain-containing protein n=2 Tax=Ec...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..29
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 102..122
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 123..144
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 47..50
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 69..101
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 30..46
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 51..68
None	No IPR available	TMHMM	TMhelix		coord: 96..118
None	No IPR available	TMHMM	TMhelix		coord: 50..67

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig18424	contig	Ecto-sp13_S_contig18424:1783..3357 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig18424.5736.1	mRNA_Ecto-sp13_S_contig18424.5736.1	Ectocarpus species13 EcNAP12_S_4_19m	mRNA	Ecto-sp13_S_contig18424 1783..3357 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_Ecto-sp13_S_contig18424.5736.1 ID=prot_Ecto-sp13_S_contig18424.5736.1|Name=mRNA_Ecto-sp13_S_contig18424.5736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
RSKEVPGTDWWALRDYPPPDPGMARLCPRLWQAWVAGLIAGSMFLLEYDI
WVYAGFVAALFLATAFIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAI
SFYWAFFFLPFADFVVGVDTFNKHDAEYKVLRERSAFVSRAVGW