mRNA_Ecto-sp13_S_contig18424.5736.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18424.5736.1
Unique NamemRNA_Ecto-sp13_S_contig18424.5736.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18424.5736.1 vs. uniprot
Match: A0A6H5KG61_9PHAE (FA_desaturase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG61_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 1.320e-89
Identity = 130/144 (90.28%), Postives = 132/144 (91.67%), Query Frame = 1 
Query:    1 RSKEVPGTDWWALRDYPPPDPGMARLCPRLWQAWVAGLIAGSMFLLEYDIWVYAGFVAALFLATAFIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAISFYWAFFFLPFADFVVGVDTFNKHDAEYKVLRERSAFVSRAVGW 432
            RSKEVPGTDWWALRDYPPPDPG ARLCPRLWQAWVAGLIAGSMFLLE+DIWVY GFVA+LFL TA IPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAISFYWAFFFLPFADFVVGVDTFNK DAEYKVLRER  F  R   W
Sbjct:   19 RSKEVPGTDWWALRDYPPPDPGTARLCPRLWQAWVAGLIAGSMFLLEFDIWVYVGFVASLFLGTAVIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAISFYWAFFFLPFADFVVGVDTFNKRDAEYKVLRERKWF--RIASW 160
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18424.5736.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KG61_9PHAE1.320e-8990.28FA_desaturase domain-containing protein n=2 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18424contigEcto-sp13_S_contig18424:1783..3357 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score262.3
Seed ortholog evalue1.3e-67
Seed eggNOG ortholog2880.D7FNV7
Model size432
Hectar predicted targeting categorysignal anchor
Exons3
EggNOG free text desc.Fatty acid desaturase
EggNOG OGs2CXPI@1,2RYW0@2759
Ec32 ortholog descriptionalkane 1-monooxygenase
Ec32 orthologEc-12_003200.1
Cds size432
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462947.2443702-CDS-Ecto-sp13_S_contig18424:1782..19461681462947.2443702-CDS-Ecto-sp13_S_contig18424:1782..1946Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18424 1783..1946 +
1681462947.2628298-CDS-Ecto-sp13_S_contig18424:2605..27201681462947.2628298-CDS-Ecto-sp13_S_contig18424:2605..2720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18424 2606..2720 +
1681462947.27538-CDS-Ecto-sp13_S_contig18424:3204..33571681462947.27538-CDS-Ecto-sp13_S_contig18424:3204..3357Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18424 3205..3357 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18424.5736.1prot_Ecto-sp13_S_contig18424.5736.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18424 1783..3357 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18424.5736.1

>prot_Ecto-sp13_S_contig18424.5736.1 ID=prot_Ecto-sp13_S_contig18424.5736.1|Name=mRNA_Ecto-sp13_S_contig18424.5736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=144bp
RSKEVPGTDWWALRDYPPPDPGMARLCPRLWQAWVAGLIAGSMFLLEYDI
WVYAGFVAALFLATAFIPDSGDSPSPYFMHLAIPFFAVKGVHEGGGWTAI
SFYWAFFFLPFADFVVGVDTFNKHDAEYKVLRERSAFVSRAVGW
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mRNA from alignment at Ecto-sp13_S_contig18424:1783..3357+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18424.5736.1 ID=mRNA_Ecto-sp13_S_contig18424.5736.1|Name=mRNA_Ecto-sp13_S_contig18424.5736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1575bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18424:1783..3357+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCGAAGGAAGTACCGGGCACGGACTGGTGGGCGTTGAGGGATTACCC
CCCGCCGGACCCGGGGATGGCTCGCCTGTGTCCCCGGCTCTGGCAAGCGT
GGGTGGCGGGACTAATCGCGGGATCCATGTTCCTGCTGGAGTATGACATC
TGGGTGTACGCAGGGTGGGTTTTCTGTGATGGATATGGGTGCGGCTCAGG
CCCAGCTTCGCTGTCTGGGCTTTCCTCACTACTGATGCTTTTGTTTGGAT
TCGTTCGGCCCAGAGTCACGTGGCGTGATGTGCGCGTGCGCAGTGTGGTG
TTGTGGACGGGAGAAAATACATACTCCGTATAGCTTGATGCAGGCGAGTA
TAGCTTGATGCAGGCGAATGGTCAACAACATGCCGTTCTCGACAACGACA
GCGAGCGGGTAGAAACAACTAGGTTATACGGGGAGCCCTCACGTTGAAAC
CGTGTGCCACCGCGATGGTACGAAACGCAAGGAAACGTTTCGCCATCGAT
GCTTGGTAGAGGGGTTGTTTTACACCTGGACTACGATTGTCAGTTCGGTC
GTCTCACGATCTACCCACTCACGACCGTGGATTTCAGGCGTGCCGTGGGA
TGCGTCGAGCCTAGGGCTACGGAAGGACCGAATCGCTAGTAGAAGAAGCA
CTTCGTAGAATCGAGGGGGCGACAGAGAAGGCAGGATGTTTCTCAACGTA
CGAAGGCAGCAGTAGTAGTAGCAGCACCAGCATCAGCAGCACCAGCGGTA
GCAAGTTCCCCAATATCAACAACAACATCATCAACAACAACAAGCCCTTG
TTCTTGTTTGGTGGCGTTACAAGGTTCGTTGCCGCGCTCTTCCTGGCGAC
GGCCTTCATCCCAGACTCGGGGGACAGCCCGTCCCCGTACTTCATGCACC
TGGCAATCCCTTTCTTCGCCGTCAAGGGCGTTCACGAGGTGCGTGGGGGG
CCGCCACACGGGAAAATTTTCTTGATAAACATCATATGTACGCGTGCGGA
CCTGCAAGCCATCCTACATCAGTCTACACATGCAGCAGGGGCAGAAAAAA
AACAAACGGAAGGGACGAAGGGTACTTGTATGGGCGGCGGGTTCTGCGTG
GCAGCGCGGAACGGTTGGGCGGTGCGTGCCTGCTTGTGTTTGTCATGGCC
CTTTGTGTAGGGCAGGCACTTGGTAGTGCTGTCGGACGGGGGAGGGGTGG
GATGACCCGGCGGGGCTCGACCAAGCCGAACAACCATGGACCTGGTTCCT
GCTTCTTTCTCCTCTGCCGCTCAAAGCACAGACCGCGTTTGTTTCTGTCG
TACTCTGCTGCCATGTGTTCATCTCTGCCGCGGTGGTGGTGGTGGTGGTG
GTGGTGGCTTGACACCCCGTCCCGAACACGTGTTCCTTTGCCGCACTGCC
GCCGCCAATGACGAAATATCAGGGCGGCGGGTGGACGGCGATAAGCTTCT
ACTGGGCGTTCTTCTTCCTGCCCTTCGCGGACTTCGTCGTGGGCGTGGAC
ACGTTCAACAAGCACGACGCAGAGTACAAGGTCCTGCGAGAAAGGTCAGC
TTTCGTTTCTCGCGCCGTAGGGTGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18424:1783..3357+

>mRNA_Ecto-sp13_S_contig18424.5736.1 ID=mRNA_Ecto-sp13_S_contig18424.5736.1|Name=mRNA_Ecto-sp13_S_contig18424.5736.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=432bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18424:1783..3357+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTCGAAGGAAGTACCGGGCACGGACTGGTGGGCGTTGAGGGATTACCC
CCCGCCGGACCCGGGGATGGCTCGCCTGTGTCCCCGGCTCTGGCAAGCGT
GGGTGGCGGGACTAATCGCGGGATCCATGTTCCTGCTGGAGTATGACATC
TGGGTGTACGCAGGGTTCGTTGCCGCGCTCTTCCTGGCGACGGCCTTCAT
CCCAGACTCGGGGGACAGCCCGTCCCCGTACTTCATGCACCTGGCAATCC
CTTTCTTCGCCGTCAAGGGCGTTCACGAGGGCGGCGGGTGGACGGCGATA
AGCTTCTACTGGGCGTTCTTCTTCCTGCCCTTCGCGGACTTCGTCGTGGG
CGTGGACACGTTCAACAAGCACGACGCAGAGTACAAGGTCCTGCGAGAAA
GGTCAGCTTTCGTTTCTCGCGCCGTAGGGTGG
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