mRNA_Ecto-sp13_S_contig18418.5732.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18418.5732.1
Unique NamemRNA_Ecto-sp13_S_contig18418.5732.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18418.5732.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18418contigEcto-sp13_S_contig18418:169..549 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size381
Hectar predicted targeting categoryother localisation
Exons1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462946.8539813-UTR-Ecto-sp13_S_contig18418:168..2171681462946.8539813-UTR-Ecto-sp13_S_contig18418:168..217Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18418 169..217 +
1681462946.8857791-UTR-Ecto-sp13_S_contig18418:532..5491681462946.8857791-UTR-Ecto-sp13_S_contig18418:532..549Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18418 533..549 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462946.873038-CDS-Ecto-sp13_S_contig18418:217..5321681462946.873038-CDS-Ecto-sp13_S_contig18418:217..532Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18418 218..532 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18418.5732.1prot_Ecto-sp13_S_contig18418.5732.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18418 218..532 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18418.5732.1

>prot_Ecto-sp13_S_contig18418.5732.1 ID=prot_Ecto-sp13_S_contig18418.5732.1|Name=mRNA_Ecto-sp13_S_contig18418.5732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MHRTVPVIVEGGLSILLQPDKICRQHSGALSLSLRIFRRIQRKNGCVGER
KRGHLDFAANVVARHARCHPADNCGTVCLEDTTYYYEETCCGMFCLLRRC
YLLR*
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mRNA from alignment at Ecto-sp13_S_contig18418:169..549+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18418.5732.1 ID=mRNA_Ecto-sp13_S_contig18418.5732.1|Name=mRNA_Ecto-sp13_S_contig18418.5732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=381bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18418:169..549+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGCTCATATATTGCTTCCCGTAGTTCGTAATTTTGGCCGGTGATAA
TGCACCGTACAGTACCCGTGATTGTGGAAGGTGGGTTGTCAATCCTACTG
CAGCCCGACAAGATATGCCGCCAACATTCGGGTGCTCTCTCCCTCTCTCT
TCGCATTTTCCGACGCATTCAAAGGAAGAACGGGTGTGTGGGCGAGCGAA
AAAGGGGACACCTTGATTTCGCTGCTAATGTCGTCGCTCGCCATGCGAGG
TGCCATCCAGCAGACAACTGTGGCACGGTTTGCCTAGAAGATACTACTTA
CTACTACGAGGAGACATGCTGTGGTATGTTTTGCCTGTTGAGACGATGCT
ATTTACTACGGTGAAGATCACTACTGCGGCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18418:169..549+

>mRNA_Ecto-sp13_S_contig18418.5732.1 ID=mRNA_Ecto-sp13_S_contig18418.5732.1|Name=mRNA_Ecto-sp13_S_contig18418.5732.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18418:169..549+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCGTACAGTACCCGTGATTGTGGAAGGTGGGTTGTCAATCCTACT
GCAGCCCGACAAGATATGCCGCCAACATTCGGGTGCTCTCTCCCTCTCTC
TTCGCATTTTCCGACGCATTCAAAGGAAGAACGGGTGTGTGGGCGAGCGA
AAAAGGGGACACCTTGATTTCGCTGCTAATGTCGTCGCTCGCCATGCGAG
GTGCCATCCAGCAGACAACTGTGGCACGGTTTGCCTAGAAGATACTACTT
ACTACTACGAGGAGACATGCTGTGGTATGTTTTGCCTGTTGAGACGATGC
TATTTACTACGGTGA
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