mRNA_Ecto-sp13_S_contig1841.5727.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1841.5727.1
Unique NamemRNA_Ecto-sp13_S_contig1841.5727.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A6H5JZW8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW8_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 1.240e-57
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR
Sbjct:  568 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 659
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: D7G7A4_ECTSI (Similar to chromodomain helicase DNA binding protein 4 isoform 5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A4_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 1.240e-57
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR
Sbjct:  616 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 707
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A7C9EPY0_OPUST (DNA helicase (Fragment) n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C9EPY0_OPUST)

HSP 1 Score: 107 bits (268), Expect = 1.410e-28
Identity = 52/92 (56.52%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E       P LV+ PLST  NWERE   W P++N V +VG+ ++R
Sbjct:    6 GSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGIY----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQAR 93
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A1D1YBA8_9ARAE (CHD3-type chromatin-remodeling factor PICKLE n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1YBA8_9ARAE)

HSP 1 Score: 117 bits (292), Expect = 1.660e-28
Identity = 54/92 (58.70%), Postives = 69/92 (75.00%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            G ++PYQLEGLNFLR SW  NT+VILADEMGLGKTIQ++AF+ S+L E PS    P L++ PLST  NWERE   W P++N V + G+ ++R
Sbjct:  285 GTLHPYQLEGLNFLRYSWSKNTHVILADEMGLGKTIQSIAFLASLLEENPS----PHLIVAPLSTLRNWEREFATWAPQMNVVMYFGSAQAR 372
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A7R9U7G4_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U7G4_9STRA)

HSP 1 Score: 116 bits (291), Expect = 2.270e-28
Identity = 56/96 (58.33%), Postives = 70/96 (72.92%), Query Frame = 1 
Query:    7 MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHE---RPSSEH---RPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            ++ YQLEG+N+LRQ+WW+ T+VILADEMGLGKTIQ+  F RSIL E   R   E    RP+LV+ PLST +NWERE  +W PELN + F G+  SR
Sbjct:  325 LHDYQLEGVNWLRQAWWNETSVILADEMGLGKTIQSATFSRSILEEQVWRSKQEGHTLRPILVVAPLSTLENWEREFALWAPELNVIVFTGDRSSR 420
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A2N9GH18_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9GH18_FAGSY)

HSP 1 Score: 114 bits (286), Expect = 1.040e-27
Identity = 54/92 (58.70%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E PS    P LV+ PLST  NWERE   W P++N V +VG+ ++R
Sbjct:   85 GTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEENPS----PHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSSQAR 172
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A6P3ZYN5_ZIZJJ (CHD3-type chromatin-remodeling factor PICKLE-like n=1 Tax=Ziziphus jujuba TaxID=326968 RepID=A0A6P3ZYN5_ZIZJJ)

HSP 1 Score: 113 bits (283), Expect = 1.380e-27
Identity = 54/92 (58.70%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E  S    P LV+ PLST  NWERE   W P++NCV +VG  ++R
Sbjct:  284 GTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFGENIS----PHLVVAPLSTLRNWEREFATWAPQMNCVMYVGTSQAR 371
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A843U219_COLES (Uncharacterized protein n=1 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843U219_COLES)

HSP 1 Score: 112 bits (279), Expect = 2.280e-27
Identity = 54/92 (58.70%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            G ++PYQLEGLNFLR SW  NT+VILADEMGLGKTIQ++AF+ S+  E  S    P LV+ PLST  NWERE   W P +N V + G+ +SR
Sbjct:  179 GKLHPYQLEGLNFLRYSWSKNTHVILADEMGLGKTIQSIAFLASLFKENLS----PHLVVAPLSTLRNWEREFATWAPHMNIVMYFGSSQSR 266
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: A0A5N6P2V3_9ASTR (Helicase ATP-binding domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P2V3_9ASTR)

HSP 1 Score: 108 bits (271), Expect = 2.650e-27
Identity = 53/92 (57.61%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            G ++PYQLEGLNFLR SW   T+VILADEMGLGKTIQ++AF+ S+  E  S    P LV+ PLST  NWERE   W P +N V +VG   +R
Sbjct:    8 GELHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLYEENVS----PHLVVAPLSTLRNWEREFATWAPHMNVVMYVGTAAAR 95
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BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Match: R0F8D0_9BRAS (Uncharacterized protein n=3 Tax=Capsella rubella TaxID=81985 RepID=R0F8D0_9BRAS)

HSP 1 Score: 113 bits (283), Expect = 2.710e-27
Identity = 53/92 (57.61%), Postives = 67/92 (72.83%), Query Frame = 1 
Query:    1 GPMYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSSEHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR 276
            G ++ YQLEGLNFL+ SW+  TNVILADEMGLGKTIQT+AF+ ++L E  +    P LV+ PLST  NWERE   W P+LN V + GN ++R
Sbjct:  257 GSLHEYQLEGLNFLKYSWFQGTNVILADEMGLGKTIQTIAFLATLLEENQA----PHLVVAPLSTLRNWEREFSTWTPQLNVVMYTGNSEAR 344
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1841.5727.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JZW8_9PHAE1.240e-57100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7A4_ECTSI1.240e-57100.00Similar to chromodomain helicase DNA binding prote... [more]
A0A7C9EPY0_OPUST1.410e-2856.52DNA helicase (Fragment) n=1 Tax=Opuntia streptacan... [more]
A0A1D1YBA8_9ARAE1.660e-2858.70CHD3-type chromatin-remodeling factor PICKLE n=1 T... [more]
A0A7R9U7G4_9STRA2.270e-2858.33Hypothetical protein n=2 Tax=Pinguiococcus pyrenoi... [more]
A0A2N9GH18_FAGSY1.040e-2758.70Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6P3ZYN5_ZIZJJ1.380e-2758.70CHD3-type chromatin-remodeling factor PICKLE-like ... [more]
A0A843U219_COLES2.280e-2758.70Uncharacterized protein n=1 Tax=Colocasia esculent... [more]
A0A5N6P2V3_9ASTR2.650e-2757.61Helicase ATP-binding domain-containing protein n=1... [more]
R0F8D0_9BRAS2.710e-2757.61Uncharacterized protein n=3 Tax=Capsella rubella T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1841contigEcto-sp13_S_contig1841:1258..2049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score195.7
Seed ortholog evalue9.5e-48
Seed eggNOG ortholog2880.D7G7A4
Model size276
KEGG koko:K11643,ko:K14439
KEGG Pathwayko04550,ko05165,ko05203,map04550,map05165,map05203
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.peripheral T cell tolerance induction
EggNOG OGsCOG0553@1,KOG0383@2759
EC3.6.4.12
Cds size270
COG Functional cat.KL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462946.4291217-CDS-Ecto-sp13_S_contig1841:1257..14831681462946.4291217-CDS-Ecto-sp13_S_contig1841:1257..1483Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1841 1258..1483 -
1681462946.4403095-CDS-Ecto-sp13_S_contig1841:1999..20431681462946.4403095-CDS-Ecto-sp13_S_contig1841:1999..2043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1841 2000..2043 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462946.4497967-UTR-Ecto-sp13_S_contig1841:2043..20491681462946.4497967-UTR-Ecto-sp13_S_contig1841:2043..2049Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1841 2044..2049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1841.5727.1prot_Ecto-sp13_S_contig1841.5727.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1841 1258..2043 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1841.5727.1

>prot_Ecto-sp13_S_contig1841.5727.1 ID=prot_Ecto-sp13_S_contig1841.5727.1|Name=mRNA_Ecto-sp13_S_contig1841.5727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
MYPYQLEGLNFLRQSWWSNTNVILADEMGLGKTIQTLAFVRSILHERPSS
EHRPVLVICPLSTTDNWERELEMWCPELNCVRFVGNMKSR
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mRNA from alignment at Ecto-sp13_S_contig1841:1258..2049-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1841.5727.1 ID=mRNA_Ecto-sp13_S_contig1841.5727.1|Name=mRNA_Ecto-sp13_S_contig1841.5727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=792bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1841:1258..2049- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCCCCATGTACCCGTACCAGCTCGAGGGGCTCAACTTCCTCCGACAAAG
GTTCGGTTTGTCTCATTTGTTAGCCCGAAGGGTTATGTTACAAGGGGGAG
GGGTGAGCTAGGTATTGAGATTGGTCACAACATGGGCTTTGGCTTGGCTC
TCGTCTTTACGGAAGCTTGATGGAGCGATGCGCCGGGATTTCTGCGGCCG
AGGCGTGCGGCAGGCGGGAGGATAAACTTTTCCGTATACGAGAAGAGAGA
CAGAGACAGAGACAGAGACAGAGACAGAGATACAGACGGACAGATAGACA
CGGAAAGAGACGAAGGGTTTGAAAGGGGCTGGGGGATATGCGTATTTTGA
AGGATGCCCATATTTGACTCCGATGTGTATTTCCTTCCATCCCTCCTCCT
CTCTCTCTCTCTGTCGCTCTGTCTATCTTTCCCTCTGTGTCTCTCTCCCT
CTCTCTCTCTCTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCTCCACGTAA
TATTGAAACCCATCTCCCCCATGGTGCTCGTCGTTTCTCTCGACCCCCGG
CGCGGGGGCCCCGCAGCTGGTGGTCTAACACCAACGTCATCCTCGCTGAC
GAGATGGGTCTAGGCAAGACCATCCAGACCCTGGCCTTCGTCCGCAGCAT
CCTCCACGAGAGGCCCTCCTCCGAGCACCGTCCCGTACTGGTGATCTGCC
CCCTGTCGACCACGGACAACTGGGAGAGGGAACTGGAGATGTGGTGCCCG
GAGCTCAACTGCGTGCGTTTCGTGGGCAACATGAAGTCGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1841:1258..2049-

>mRNA_Ecto-sp13_S_contig1841.5727.1 ID=mRNA_Ecto-sp13_S_contig1841.5727.1|Name=mRNA_Ecto-sp13_S_contig1841.5727.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1841:1258..2049- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACCCGTACCAGCTCGAGGGGCTCAACTTCCTCCGACAAAGCTGGTG
GTCTAACACCAACGTCATCCTCGCTGACGAGATGGGTCTAGGCAAGACCA
TCCAGACCCTGGCCTTCGTCCGCAGCATCCTCCACGAGAGGCCCTCCTCC
GAGCACCGTCCCGTACTGGTGATCTGCCCCCTGTCGACCACGGACAACTG
GGAGAGGGAACTGGAGATGTGGTGCCCGGAGCTCAACTGCGTGCGTTTCG
TGGGCAACATGAAGTCGCGC
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