mRNA_Ecto-sp13_S_contig18408.5726.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18408.5726.1
Unique NamemRNA_Ecto-sp13_S_contig18408.5726.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18408.5726.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18408contigEcto-sp13_S_contig18408:165..528 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size364
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462946.3547113-UTR-Ecto-sp13_S_contig18408:164..1701681462946.3547113-UTR-Ecto-sp13_S_contig18408:164..170Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18408 165..170 +
1681462946.3748496-UTR-Ecto-sp13_S_contig18408:521..5281681462946.3748496-UTR-Ecto-sp13_S_contig18408:521..528Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig18408 522..528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462946.3638406-CDS-Ecto-sp13_S_contig18408:170..5211681462946.3638406-CDS-Ecto-sp13_S_contig18408:170..521Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18408 171..521 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18408.5726.1prot_Ecto-sp13_S_contig18408.5726.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18408 171..521 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18408.5726.1

>prot_Ecto-sp13_S_contig18408.5726.1 ID=prot_Ecto-sp13_S_contig18408.5726.1|Name=mRNA_Ecto-sp13_S_contig18408.5726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=117bp
MFSRREAFAVCSLTRRKEAIIACECPGLCGSLIQQRHLCCRAGGCLQLSL
FWLGSVPFPTSIPDKQTRTPSVLTKTSHPFYKGSSRLVPKKKKGVVVRGW
RFAEPNTESCIERKGL*
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mRNA from alignment at Ecto-sp13_S_contig18408:165..528+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18408.5726.1 ID=mRNA_Ecto-sp13_S_contig18408.5726.1|Name=mRNA_Ecto-sp13_S_contig18408.5726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=364bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18408:165..528+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCATTATGTTTTCGAGGCGAGAGGCTTTCGCCGTTTGTTCGCTTACGCG
CCGTAAAGAAGCCATAATTGCTTGCGAATGCCCTGGTCTATGTGGTTCTT
TGATACAGCAGCGGCATCTTTGTTGTCGTGCAGGAGGTTGTCTGCAACTT
AGTTTGTTCTGGTTAGGCTCAGTCCCTTTTCCGACATCCATACCGGACAA
ACAGACGCGGACGCCTTCCGTGCTCACAAAGACAAGTCACCCTTTCTATA
AAGGCAGCTCCAGGCTAGTCCCAAAAAAGAAAAAAGGCGTTGTAGTGAGG
GGATGGCGTTTCGCGGAACCAAACACAGAGAGTTGCATCGAGAGGAAGGG
TTTGTAGAAGAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18408:165..528+

>mRNA_Ecto-sp13_S_contig18408.5726.1 ID=mRNA_Ecto-sp13_S_contig18408.5726.1|Name=mRNA_Ecto-sp13_S_contig18408.5726.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=351bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18408:165..528+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTTTTCGAGGCGAGAGGCTTTCGCCGTTTGTTCGCTTACGCGCCGTAA
AGAAGCCATAATTGCTTGCGAATGCCCTGGTCTATGTGGTTCTTTGATAC
AGCAGCGGCATCTTTGTTGTCGTGCAGGAGGTTGTCTGCAACTTAGTTTG
TTCTGGTTAGGCTCAGTCCCTTTTCCGACATCCATACCGGACAAACAGAC
GCGGACGCCTTCCGTGCTCACAAAGACAAGTCACCCTTTCTATAAAGGCA
GCTCCAGGCTAGTCCCAAAAAAGAAAAAAGGCGTTGTAGTGAGGGGATGG
CGTTTCGCGGAACCAAACACAGAGAGTTGCATCGAGAGGAAGGGTTTGTA
G
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