mRNA_Ecto-sp13_S_contig18400.5721.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18400.5721.1
Unique NamemRNA_Ecto-sp13_S_contig18400.5721.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18400.5721.1 vs. uniprot
Match: D7G5I3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5I3_ECTSI)

HSP 1 Score: 259 bits (662), Expect = 1.640e-79
Identity = 174/249 (69.88%), Postives = 176/249 (70.68%), Query Frame = 1 
Query:    1 RDRARPLRHQHQQQRYYGGG---ARDRSRDRSHGGAYGRDRVWPPSSMSSYSRNGGGAGGDLSRYRRDXXXXXXXXRGPRDFYSRRGRRGSLEDRGREDGSGGRRDRDKPSAXXXXXXXXXXXXXXXAAVDSAATPAKSGSGDKQEAKTTAAASAKAIAVPGSVITVVSDSAKGDDTAQKANLPDLRMVIERSRRRGKMKPSRGQEEGGGEG---PVAVRGRMAGAPGVMRGFSSSGEE-GEQEGKRVG 726
            RDRARPLRHQ             ARDRSRDRSHGGAYGRDR WPPSSMSSY                 XXXXXXXXRGPRDFYSRRGRRGSLEDRGREDGSGGRRDRDKPSA                AVDSAATP KSG+ DK+E K T A S KAIAVPGSVITVVSDSAKGDDTAQKANLPDLRMVIERSRRRGKMKP RGQE         PV  RGRMAGAPGVMR FSSSGEE G   G R G
Sbjct:  277 RDRARPLRHQXXXXXXXXXXXXXARDRSRDRSHGGAYGRDRDWPPSSMSSYXXXXXXXXXXXXXXXXXXXXXXXXXRGPRDFYSRRGRRGSLEDRGREDGSGGRRDRDKPSAGRGGDGGMQGKEGRGTAVDSAATPGKSGNDDKEEPKATTATSVKAIAVPGSVITVVSDSAKGDDTAQKANLPDLRMVIERSRRRGKMKPPRGQEXXXXXXXXXPVVARGRMAGAPGVMRAFSSSGEEDGADNGTREG 525
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BLAST of mRNA_Ecto-sp13_S_contig18400.5721.1 vs. uniprot
Match: A0A6H5L076_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L076_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 4.080e-40
Identity = 98/123 (79.67%), Postives = 101/123 (82.11%), Query Frame = 1 
Query:  373 AAVDSAATPAKSGSGDKQEAKTTAAASAKAIAVPGSVITVVSDSAKGDDTAQKANLPDLRMVIERSRRRGKMKPSRGQEE--GGGEGPVAVRGRMAGAPGVMRGFSSSGE--EGEQEG--KRV 723
            AAVDSAA+P KSGS  K+EAK T AAS KAIAVPGSVITVVSDSAKG+DTAQKANLPDLR VIERSRRRGKM PSRGQEE  G GEGPV  RGRMAGAPGVMRGFS S E   G  EG  KRV
Sbjct:  396 AAVDSAASPGKSGSDGKEEAKATTAASTKAIAVPGSVITVVSDSAKGNDTAQKANLPDLRTVIERSRRRGKMNPSRGQEEEKGEGEGPVVARGRMAGAPGVMRGFSPSDEADNGTSEGGVKRV 518
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18400.5721.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5I3_ECTSI1.640e-7969.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L076_9PHAE4.080e-4079.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18400contigEcto-sp13_S_contig18400:241..2909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size726
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-22_000720.1
Cds size726
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.9491148-CDS-Ecto-sp13_S_contig18400:240..6471681462945.9491148-CDS-Ecto-sp13_S_contig18400:240..647Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18400 241..647 +
1681462945.9604456-CDS-Ecto-sp13_S_contig18400:1913..20381681462945.9604456-CDS-Ecto-sp13_S_contig18400:1913..2038Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18400 1914..2038 +
1681462945.9710226-CDS-Ecto-sp13_S_contig18400:2715..29091681462945.9710226-CDS-Ecto-sp13_S_contig18400:2715..2909Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18400 2716..2909 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18400.5721.1prot_Ecto-sp13_S_contig18400.5721.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18400 241..2909 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18400.5721.1

>prot_Ecto-sp13_S_contig18400.5721.1 ID=prot_Ecto-sp13_S_contig18400.5721.1|Name=mRNA_Ecto-sp13_S_contig18400.5721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=242bp
RDRARPLRHQHQQQRYYGGGARDRSRDRSHGGAYGRDRVWPPSSMSSYSR
NGGGAGGDLSRYRRDRERSRDRDRGPRDFYSRRGRRGSLEDRGREDGSGG
RRDRDKPSAGRGGDGGGQGKEGRGAAVDSAATPAKSGSGDKQEAKTTAAA
SAKAIAVPGSVITVVSDSAKGDDTAQKANLPDLRMVIERSRRRGKMKPSR
GQEEGGGEGPVAVRGRMAGAPGVMRGFSSSGEEGEQEGKRVG
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mRNA from alignment at Ecto-sp13_S_contig18400:241..2909+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18400.5721.1 ID=mRNA_Ecto-sp13_S_contig18400.5721.1|Name=mRNA_Ecto-sp13_S_contig18400.5721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2669bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18400:241..2909+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGACAGAGCCAGGCCGCTCCGGCACCAGCACCAGCAGCAGCGCTACTA
CGGCGGCGGGGCGAGGGACCGGAGCCGGGACCGATCGCACGGAGGCGCAT
ACGGTAGAGACCGAGTCTGGCCGCCGTCGTCGATGTCGTCGTACAGCAGA
AACGGGGGGGGGGCGGGCGGAGACCTCAGCCGGTACCGGAGGGACCGGGA
GAGGAGCAGGGACCGCGACAGGGGCCCCCGTGATTTCTACTCGCGGAGGG
GGCGGCGGGGTAGTCTGGAAGACCGGGGTCGGGAGGACGGAAGCGGGGGT
CGGCGGGATCGGGACAAGCCGTCGGCAGGGCGCGGCGGGGACGGCGGCGG
GCAAGGGAAGGAGGGGCGGGGCGCCGCGGTTGATTCGGCGGCAACTCCGG
CGAAGAGGTGGGTGGCAGCGCGCACGGCGGGCGTTGTAGGTAGTCTTGTC
CGTGTGCCGTGAATGAAATGCATGTTTCCGTTGATCGATCGGCCAGCGCG
GTCGAGATGGTGGTAACTAGCACGCGCGTCGGATGCAGCCAGCCGTGTGT
GTATGTAGGTTATGTGGTCGGCAGAGAGCACACTCTGTGTAAACCTCGCT
CCAGCTTTTCGACATCCTGTCGGTTGTGCGTACCACCTCTGATGCACTTT
TCAAGAGTCAAGTCTACGCCCACTCTATCTACGAAGTGTAGGAATTGCCG
TCTTTCTTTTTGTGGGTGTGACATTGACATCGCACCGCACGAGCGGTGGT
GGGTATGGCTTGGCTCTGAAGATGTATTTTCGAGTTTGAGCATGGCACAG
GAGGTATATGGTTGTTCGGGATTTCAGCCCACGGTCCCTACTTCCCGTGT
GATCCTTACGATCAACCAGGTGTCTGACCCAGCGAGGCAAGCTACAACAC
ACTGTCGGATTGTAGAGTGTATTGTCAGATTCTTGTGTGTCTGGTCGTGG
TTTGGTGCCTGCGTGCCTGCTGTCAAGATTTTCCTTTCATGGTGCGCTGC
TGGCTGTATTTCGTTGGATACCGTATATGACACAAGACAACACCCTCCCT
AGACCGATATTCAAAGCGTGATTTATCAACAGCAGAAAGAGTCACAGCGC
CGATGACGGCGGCGTTGAACGTTGAAGCCGGCTGGTCGCGAGCTCTCCGA
AAACGTATCGTTTCCTTTATATCCATCCTCTTGGTCGTGCGGTCGTAATC
GAGCTTTCAAAATCGGTCCAGGGTGTGTGTTATCTTCTGTCGTACACTGT
ACGTGCTCTCAGGGCTCTCCGTTCGTCGATGTCTTTCCTCTCATAACGCC
CTGCTTCTGTGTCATTGCTGTATAATTGCTCTCACGACCCTCCTTGCGTT
GCAACCTACACTGACAGTGTAATCGTTAGACACCTGCTCCCGCGAACTTC
ATGTTGTCGTGCCCTACTGGCTGTACGTCGATCTCTCGTCAACCCCTTTC
CCCCTTACCTCTGTGCTGTGTTGGTTCGGTGGTGGTGGTGGGGTTATTGC
CGTTATTTTTTTCTCGCTGTCGATGTCCTTTCCCCTTACCTTTGTTGTGT
TCATTGCCGTTGGTCGTGTTAGTGCTGTCGTTGGTCTCGCAATCGATGTC
CTTCCCCCTCATCTCTTTGTTGCTGTGGTGGTCGTCGTCTCTGCTGTTTT
TGTCGTGTTTTTTTCTTGCACAGCGGTAGCGGCGACAAGCAGGAGGCCAA
GACTACTGCTGCTGCTAGTGCCAAGGCAATCGCGGTTCCCGGCAGCGTTA
TCACCGTCGTCAGCGACTCCGCCAAAGGTGACGACACCGCACAGAAAGGT
AAGGATGACAACGAAAACGCCCGAGACACACCAGACAGCACATCGCCTTC
GACTGCTGTGGTTATGTCTCGAACGATTGGTCTTTCGACTGCTGCTGTGG
TTAAATCTCGAATGATTAGTCTTGCTGTGATTGAATGCATTTTTTCTTGA
CAGCAACGAAGACGAGACAGCACAGAAAGGTAGGATAAAAATACACCCGA
GACGTAGCGAACATCCCCTGCCCCCTGGTCAGTACCCTGGGGTGCGAATC
AGCAAGCGATCAATGAAGAAATCACACGGCCCCTGATCACACGGCCCCTG
CGGGTTGAATAACAAGAATTACTTGTTGATGTGTAGGCTATGGTCTGAGA
ATGAACGGGTCAGATAGTAATACCTTGATGGCCCAAATACATATCACCCG
TTTCACAATATTACACACACGCATCGTCCTTGTAAAACGTATCCTGGGCC
GGCGAAAACCTGGCATATCGCTCGCCCCCTGGCATTGTAGGGATGCGAGG
TCTATGGTCTGACGACTACGACATCCACGGCTTTGAGTACACGATCCATC
TGCGAAAGGCATGCGTTTACATGAGTATCCCCCGCCCCTCCCTGTAGTCA
GTGCCTCACGACTATTGAAGGCATGTAATTCATGAGTACGCCCCCCCCCC
TATTTGATGTTGCCTCGGAATACAGCCAACCTGCCGGACCTGCGGATGGT
GATCGAGCGGTCCCGCCGCCGCGGGAAAATGAAGCCCTCCCGGGGACAAG
AAGAAGGGGGAGGAGAGGGGCCCGTGGCGGTGAGAGGGAGGATGGCGGGG
GCTCCCGGGGTCATGCGAGGCTTTTCTTCTTCGGGTGAGGAGGGTGAGCA
GGAGGGGAAAAGAGTAGGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18400:241..2909+

>mRNA_Ecto-sp13_S_contig18400.5721.1 ID=mRNA_Ecto-sp13_S_contig18400.5721.1|Name=mRNA_Ecto-sp13_S_contig18400.5721.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=726bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18400:241..2909+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGGACAGAGCCAGGCCGCTCCGGCACCAGCACCAGCAGCAGCGCTACTA
CGGCGGCGGGGCGAGGGACCGGAGCCGGGACCGATCGCACGGAGGCGCAT
ACGGTAGAGACCGAGTCTGGCCGCCGTCGTCGATGTCGTCGTACAGCAGA
AACGGGGGGGGGGCGGGCGGAGACCTCAGCCGGTACCGGAGGGACCGGGA
GAGGAGCAGGGACCGCGACAGGGGCCCCCGTGATTTCTACTCGCGGAGGG
GGCGGCGGGGTAGTCTGGAAGACCGGGGTCGGGAGGACGGAAGCGGGGGT
CGGCGGGATCGGGACAAGCCGTCGGCAGGGCGCGGCGGGGACGGCGGCGG
GCAAGGGAAGGAGGGGCGGGGCGCCGCGGTTGATTCGGCGGCAACTCCGG
CGAAGAGCGGTAGCGGCGACAAGCAGGAGGCCAAGACTACTGCTGCTGCT
AGTGCCAAGGCAATCGCGGTTCCCGGCAGCGTTATCACCGTCGTCAGCGA
CTCCGCCAAAGGTGACGACACCGCACAGAAAGCCAACCTGCCGGACCTGC
GGATGGTGATCGAGCGGTCCCGCCGCCGCGGGAAAATGAAGCCCTCCCGG
GGACAAGAAGAAGGGGGAGGAGAGGGGCCCGTGGCGGTGAGAGGGAGGAT
GGCGGGGGCTCCCGGGGTCATGCGAGGCTTTTCTTCTTCGGGTGAGGAGG
GTGAGCAGGAGGGGAAAAGAGTAGGT
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