mRNA_Ecto-sp13_S_contig18396.5716.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18396.5716.1
Unique NamemRNA_Ecto-sp13_S_contig18396.5716.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18396.5716.1 vs. uniprot
Match: D7FU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU46_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 4.710e-42
Identity = 76/79 (96.20%), Postives = 78/79 (98.73%), Query Frame = 1 
Query:    1 GSSLTASAEEWELVVCQELAVEGKYTFKIPLQFLFPVHNSLKHASLAWRARARKERHRQGIFSADEEAFAHGMVVVHVS 237
            GSSLTASAE WELVVCQELAVEGKYTFKIPLQFLFPVHNSLKHA+LAWRARARKERHRQG+FSADEEAFAHGMVVVHVS
Sbjct:  362 GSSLTASAEAWELVVCQELAVEGKYTFKIPLQFLFPVHNSLKHAALAWRARARKERHRQGLFSADEEAFAHGMVVVHVS 440
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BLAST of mRNA_Ecto-sp13_S_contig18396.5716.1 vs. uniprot
Match: A0A6H5K1V3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V3_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 1.300e-21
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:   85 IPLQFLFPVHNSLKHASLAWRARARKERHRQGIFSADEEAFAHGMVVVHVS 237
            IPLQFLFPVHNS+KHA+LAWRARARKER+RQG+FS DEEAFAHGMVVVHVS
Sbjct:  354 IPLQFLFPVHNSVKHAALAWRARARKERNRQGLFSTDEEAFAHGMVVVHVS 404
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18396.5716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FU46_ECTSI4.710e-4296.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1V3_9PHAE1.300e-2190.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18396contigEcto-sp13_S_contig18396:2441..3374 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size316
Hectar predicted targeting categoryother localisation
Exons2
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.5322843-CDS-Ecto-sp13_S_contig18396:2442..26701681462945.5322843-CDS-Ecto-sp13_S_contig18396:2442..2670Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18396 2443..2670 -
1681462945.5412157-CDS-Ecto-sp13_S_contig18396:3290..33741681462945.5412157-CDS-Ecto-sp13_S_contig18396:3290..3374Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18396 3291..3374 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18396.5716.1prot_Ecto-sp13_S_contig18396.5716.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18396 2443..3374 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18396.5716.1

>prot_Ecto-sp13_S_contig18396.5716.1 ID=prot_Ecto-sp13_S_contig18396.5716.1|Name=mRNA_Ecto-sp13_S_contig18396.5716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
GSSLTASAEEWELVVCQELAVEGKYTFKIPLQFLFPVHNSLKHASLAWRA
RARKERHRQGIFSADEEAFAHGMVVVHVSVSRARGLGPIAAAAAAAAATA
GAPQ
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mRNA from alignment at Ecto-sp13_S_contig18396:2441..3374-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18396.5716.1 ID=mRNA_Ecto-sp13_S_contig18396.5716.1|Name=mRNA_Ecto-sp13_S_contig18396.5716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=934bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18396:2441..3374- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCTCGTTAACGGCGTCCGCGGAGGAGTGGGAGCTGGTGGTGTGCCA
GGAGCTTGCCGTGGAGGGAAAGTACACCTTCAAGGCGAGTGGGTTCAGTT
AACCATGAAGCCCCCGATGCTTCGTCGTTGTTGTTGTTGTTGCTGCTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTTCTGCTGATGCTGCTGCACTTTTGCTGTGGTTCTGGCATTCCTGTG
TTCGATGTTGATCGTAGATGCGTGACGCCGCCGGGTTCCCTAAGATGCGA
GAGTCTACGTTTCCTCCACGGCCACACAACAAACAATTGTTTATTCCCGC
CGCGCTCAGATGAAACATAGTACACACTTCCCCCTCGAATTTCCGCCCGC
CCCCCCAGTGGGCTATGAACGGCGGGATGTGGAATCGATAGGATGAGGTA
CAACTTTGTTTTATACACCTTTGGCAAAGTAGGAAGGGAACAGTTGGCCA
TCTGTGATCGATCTTGTGCTCCGTTCTCTCGAGGACGCGTGGTCAATGGT
TAAAAACAGCTGAGGCATGCAAAACATGAGTGACGCCCCCCCCCCCCCCC
CCCTCCGTCCCGGTTTTGTAGGGACGCGAGGTCAATGGTCTAACGACTAC
GGCATGCACGACTATGAGTATCCCCCCCCTTCCCCCCCTACCCCCCCTCT
CCAGATCCCACTGCAGTTCCTTTTCCCGGTGCACAACTCCCTCAAGCATG
CATCCCTGGCGTGGCGCGCAAGGGCAAGGAAGGAGCGACATCGGCAGGGT
ATCTTCTCGGCAGACGAAGAGGCGTTCGCCCACGGCATGGTCGTGGTCCA
CGTGAGCGTCTCAAGGGCTAGGGGGCTGGGTCCCATCGCGGCTGCGGCCG
CGGCTGCCGCTGCCACCGCCGGGGCGCCGCAGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18396:2441..3374-

>mRNA_Ecto-sp13_S_contig18396.5716.1 ID=mRNA_Ecto-sp13_S_contig18396.5716.1|Name=mRNA_Ecto-sp13_S_contig18396.5716.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18396:2441..3374- (Ectocarpus species13 EcNAP12_S_4_19m)
GGCAGCTCGTTAACGGCGTCCGCGGAGGAGTGGGAGCTGGTGGTGTGCCA
GGAGCTTGCCGTGGAGGGAAAGTACACCTTCAAGATCCCACTGCAGTTCC
TTTTCCCGGTGCACAACTCCCTCAAGCATGCATCCCTGGCGTGGCGCGCA
AGGGCAAGGAAGGAGCGACATCGGCAGGGTATCTTCTCGGCAGACGAAGA
GGCGTTCGCCCACGGCATGGTCGTGGTCCACGTGAGCGTCTCAAGGGCTA
GGGGGCTGGGTCCCATCGCGGCTGCGGCCGCGGCTGCCGCTGCCACCGCC
GGGGCGCCGCAG
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