mRNA_Ecto-sp13_S_contig18394.5715.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18394.5715.1
Unique NamemRNA_Ecto-sp13_S_contig18394.5715.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18394.5715.1 vs. uniprot
Match: A0A6H5J5T1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5T1_9PHAE)

HSP 1 Score: 252 bits (644), Expect = 3.770e-76
Identity = 228/315 (72.38%), Postives = 232/315 (73.65%), Query Frame = 1 
Query:    1 LIDYGSAAKGVYRFARTYGFVNFRHTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDNGEPXXXXXXXXXXXXNRGRRQSGGIPSGSDSLLVHVGLSPLAGQEQKEHQQQRQLVVPVRLADVAXXXXXXXDEQALQEPSRRLLRPETDQR--AADGFSGAVAATA-FAAGAKAAQPGAGAAVAAAEVEALEERLRRYPTTCQEDLESLGLVASDGTEEDNSADGTGGTW----------------------ASGPVTAEWAETCISLRAAEKIALQRALRAARMPR 870
            LIDYGSAAKG YRFARTYGFVNFR TTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                            NRGRR  GGIPSGSDSL VHVGLS  AGQEQKE        VPVRLADVAXXXXX  +EQ L+EP+RRLL PETDQ   AAD FSGAVAATA FAAGA+AAQPG   AVAAAEVEALEERLRRYPTT QEDLE LGLVASDGTEEDNSADGTGGT                       ASG VTAEWAETCISLRAAEKIALQRALR AR PR
Sbjct:  320 LIDYGSAAKGAYRFARTYGFVNFRQTTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------------------------NRGRRLIGGIPSGSDSLRVHVGLSSPAGQEQKEXX--XXXXVPVRLADVAXXXXXTFEEQVLEEPNRRLLSPETDQEGEAADVFSGAVAATAKFAAGARAAQPGTRVAVAAAEVEALEERLRRYPTTWQEDLELLGLVASDGTEEDNSADGTGGTRRPQTEKTSAAAGAKGAALKAGAASGAVTAEWAETCISLRAAEKIALQRALRTARRPR 604
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18394.5715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5J5T1_9PHAE3.770e-7672.38SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18394contigEcto-sp13_S_contig18394:3..941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size873
Hectar predicted targeting categoryother localisation
Exons2
Cds size873
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.4914525-CDS-Ecto-sp13_S_contig18394:2..7651681462945.4914525-CDS-Ecto-sp13_S_contig18394:2..765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18394 3..765 +
1681462945.5063152-CDS-Ecto-sp13_S_contig18394:831..9411681462945.5063152-CDS-Ecto-sp13_S_contig18394:831..941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18394 832..941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18394.5715.1prot_Ecto-sp13_S_contig18394.5715.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18394 3..941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18394.5715.1

>prot_Ecto-sp13_S_contig18394.5715.1 ID=prot_Ecto-sp13_S_contig18394.5715.1|Name=mRNA_Ecto-sp13_S_contig18394.5715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=291bp
LIDYGSAAKGVYRFARTYGFVNFRHTTGGGGGSSSSNSSSSSNSSSSSNS
SSSSNSSSSSSSNSSSSNSSSSSSSSSSSSSSNASDNGEPSNDGGDDGSD
GGNRGRRQSGGIPSGSDSLLVHVGLSPLAGQEQKEHQQQRQLVVPVRLAD
VAAAAAAASDEQALQEPSRRLLRPETDQRAADGFSGAVAATAFAAGAKAA
QPGAGAAVAAAEVEALEERLRRYPTTCQEDLESLGLVASDGTEEDNSADG
TGGTWASGPVTAEWAETCISLRAAEKIALQRALRAARMPR*
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mRNA from alignment at Ecto-sp13_S_contig18394:3..941+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18394.5715.1 ID=mRNA_Ecto-sp13_S_contig18394.5715.1|Name=mRNA_Ecto-sp13_S_contig18394.5715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=939bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18394:3..941+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGATCGACTATGGGTCGGCCGCGAAAGGAGTGTACCGGTTCGCCAGGAC
CTACGGTTTCGTCAACTTCCGCCACACCACCGGCGGCGGCGGCGGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG
CAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATG
CCAGCGACAATGGCGAGCCCTCCAACGACGGCGGCGACGACGGCAGTGAC
GGTGGGAACAGGGGGCGACGGCAAAGTGGTGGCATCCCGTCCGGCTCCGA
TTCTCTCCTCGTGCACGTGGGCTTATCGCCCCTCGCCGGACAAGAACAGA
AGGAGCATCAGCAGCAGCGGCAGCTGGTCGTGCCAGTGAGGCTCGCGGAC
GTAGCAGCAGCGGCAGCAGCGGCGTCCGATGAGCAAGCCCTCCAGGAACC
GAGCCGGCGTTTGTTGAGACCAGAAACTGACCAAAGGGCTGCCGACGGTT
TTTCCGGTGCTGTGGCGGCAACCGCGTTCGCGGCGGGAGCAAAAGCGGCG
CAACCAGGCGCAGGGGCGGCGGTTGCCGCGGCCGAGGTTGAGGCTCTCGA
GGAGCGGTTGCGTCGCTATCCTACCACCTGCCAGGAGGACTTGGAATCGC
TCGGGCTCGTCGCTTCCGACGGGACGGAAGAAGATAACTCGGCAGACGGA
ACGGGGGGAACCTGTCGCCCGCCGACAGACAAGACGTCCGCAGCGGCAGT
GGCAAAGGGACCGGGGATGAAAGAAGGAGGGGCAAGCGGGCCGGTGACGG
CGGAGTGGGCGGAAACGTGCATCTCCTTGCGGGCGGCTGAGAAAATCGCT
CTTCAGCGGGCACTGCGCGCGGCGAGGATGCCTCGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18394:3..941+

>mRNA_Ecto-sp13_S_contig18394.5715.1 ID=mRNA_Ecto-sp13_S_contig18394.5715.1|Name=mRNA_Ecto-sp13_S_contig18394.5715.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=873bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18394:3..941+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGATCGACTATGGGTCGGCCGCGAAAGGAGTGTACCGGTTCGCCAGGAC
CTACGGTTTCGTCAACTTCCGCCACACCACCGGCGGCGGCGGCGGCAGCA
GCAGCAGCAACAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAACAGC
AGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAG
CAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAATG
CCAGCGACAATGGCGAGCCCTCCAACGACGGCGGCGACGACGGCAGTGAC
GGTGGGAACAGGGGGCGACGGCAAAGTGGTGGCATCCCGTCCGGCTCCGA
TTCTCTCCTCGTGCACGTGGGCTTATCGCCCCTCGCCGGACAAGAACAGA
AGGAGCATCAGCAGCAGCGGCAGCTGGTCGTGCCAGTGAGGCTCGCGGAC
GTAGCAGCAGCGGCAGCAGCGGCGTCCGATGAGCAAGCCCTCCAGGAACC
GAGCCGGCGTTTGTTGAGACCAGAAACTGACCAAAGGGCTGCCGACGGTT
TTTCCGGTGCTGTGGCGGCAACCGCGTTCGCGGCGGGAGCAAAAGCGGCG
CAACCAGGCGCAGGGGCGGCGGTTGCCGCGGCCGAGGTTGAGGCTCTCGA
GGAGCGGTTGCGTCGCTATCCTACCACCTGCCAGGAGGACTTGGAATCGC
TCGGGCTCGTCGCTTCCGACGGGACGGAAGAAGATAACTCGGCAGACGGA
ACGGGGGGAACCTGGGCAAGCGGGCCGGTGACGGCGGAGTGGGCGGAAAC
GTGCATCTCCTTGCGGGCGGCTGAGAAAATCGCTCTTCAGCGGGCACTGC
GCGCGGCGAGGATGCCTCGGTGA
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