mRNA_Ecto-sp13_S_contig18393.5714.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18393.5714.1
Unique NamemRNA_Ecto-sp13_S_contig18393.5714.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18393.5714.1 vs. uniprot
Match: D7G3K7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K7_ECTSI)

HSP 1 Score: 379 bits (974), Expect = 1.630e-127
Identity = 202/206 (98.06%), Postives = 202/206 (98.06%), Query Frame = 1 
Query:    1 SNNSSTGGPSGXXXXXXXXGGPWDTKIVVSLPKDPMGERHETGRAGKTSNPVWDQAVVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGALDGVGLASLPRGVTTPADQG-DEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDDTPLN 615
            SNNSSTGGP  XXXXXXX GGPWDTKIVVSLPKDPMGERHETGRAGKTSNPVWDQAVVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGALDGVGLASLPRGVTTPADQG DEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDDTPLN
Sbjct:   37 SNNSSTGGPXXXXXXXXXGGGPWDTKIVVSLPKDPMGERHETGRAGKTSNPVWDQAVVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLREGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGALDGVGLASLPRGVTTPADQGHDEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDDDTPLN 242
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18393.5714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G3K7_ECTSI1.630e-12798.06Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18393contigEcto-sp13_S_contig18393:4..3275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size618
Hectar predicted targeting categoryother localisation
Exons4
Cds size615
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.4196103-CDS-Ecto-sp13_S_contig18393:3..1681681462945.4196103-CDS-Ecto-sp13_S_contig18393:3..168Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18393 4..168 +
1681462945.4320183-CDS-Ecto-sp13_S_contig18393:1594..16991681462945.4320183-CDS-Ecto-sp13_S_contig18393:1594..1699Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18393 1595..1699 +
1681462945.4473827-CDS-Ecto-sp13_S_contig18393:2316..24841681462945.4473827-CDS-Ecto-sp13_S_contig18393:2316..2484Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18393 2317..2484 +
1681462945.4610374-CDS-Ecto-sp13_S_contig18393:3097..32741681462945.4610374-CDS-Ecto-sp13_S_contig18393:3097..3274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18393 3098..3274 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18393.5714.1prot_Ecto-sp13_S_contig18393.5714.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18393 4..3274 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18393.5714.1

>prot_Ecto-sp13_S_contig18393.5714.1 ID=prot_Ecto-sp13_S_contig18393.5714.1|Name=mRNA_Ecto-sp13_S_contig18393.5714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=205bp
SNNSSTGGPSGSSSGSTGGGGPWDTKIVVSLPKDPMGERHETGRAGKTSN
PVWDQAVVLRDIEYSELVRVEMRRPRKIGENPVLASVEFEVHDVIGLSLR
EGASVFQLECDRSRARYGIILLAFRFDPPVAADVLGALDGVGLASLPRGV
TTPADQGDEGEKAPAWGAPEAGQQAEREVEVAEPVYINVEGHFACLLLDD
DTPLN
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mRNA from alignment at Ecto-sp13_S_contig18393:4..3275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18393.5714.1 ID=mRNA_Ecto-sp13_S_contig18393.5714.1|Name=mRNA_Ecto-sp13_S_contig18393.5714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18393:4..3275+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACAATTCATCAACCGGCGGTCCATCCGGCTCCAGTAGTGGCTCTAC
TGGCGGAGGCGGTCCTTGGGACACCAAGATCGTAGTGAGCCTTCCGAAAG
ACCCTATGGGGGAGAGACACGAGACAGGCAGGGCGGGGAAGACTTCGAAC
CCGGTGTGGGACCAGGTGCGTACATAGCTTTCTCGAGAACCGACTTGAAA
GACTACCTGTTCGAAATACGTGGTGCCACAGCAGGGGACGGACGTGTTGA
AGGTAAATAATTGTAGTAGGAAAATACTTGCTGAGTTATGTGTGATGTCT
GAGTATGGCTAGAGTCTGAAGAGCCACGAAAGATGGGCCGTCCAGGCAGG
GTCAAGATAGCGTTCCACAGGATACACTTCGGTACATTTTTTTTTAGGGT
TAGTATGTAAACCGAACCAACCCAGCAGGTGGTTTTCTCTCTCACACCCC
CGCAGACCAATTCGTTAGGTTCTCTCGTCTCTTGACACAGCGGCGGATGT
ACTTGGAAGTAGGTGCACTCTGAACGAATATAGTGTATCCGATGCGCGGG
CAGCAATGTTCGACTCTCCCTGCGTTGATCGATAACGGCACGCGGCGATG
AGTTGTCGGCTTGAAATGCCAGCTTAGCAAGGTCCTCGCCTTGTAGTCGT
CGCCCTGCGTGGCACCGTTGGCAGGCTGGAAGGGGTAGGGGGTGGCGGTT
GAGGAACAAAAGATGTTCGCGCGCGCGTGGGTGTGTACATGACACAGAAT
TGGGCATATGTGCGTTATTATGTCTAGCACGATTCAACAGACGACGGCGT
GAACCTCTATGGTTGGGATAATTTCTGTACTGATCAGGTCCGACCGTCCG
AGCGAGGTACTGTACCTGCTGTATATGTAGTCCCAGATTTGATCCTTCAC
GTGGCCTCTAAATCTTTTGGCTGCGACCCCAGATTGGACGGCGTCTGTGG
CCGTTGCAGCAGTCCCCGTAGCTGTTGTAGGAATTTCTGGTGTTGCGGCC
CCGGGTTTTCACCCGATGCCACACACCAGGTGCGTCAAGAGGCTGCCGCG
TGGCGGAAGGTGTACGTTGGCTAAGCAGTTCCGGGGCTGTTTCAAACGAG
TCTAGCTTTGCCGATTGGATGCCTCACTCGCTTGCGTCGCTCCTCCCTGA
CATCGTCAGCGGTGGGTTGGTAATTACGGTATTTCTTCTTCTTTTTGATT
GAATCAGTATGACCACAACGCATCCATCTCTATCGAAGAAAAGAGAAAAA
GATGGATTATTTGGCAATGAAATCTTGTTTGTTTTTTTTGTTCTTTTTAC
GTTTTGGAAGGGTTTTCGTCACTTCCATCCTCGAATCAGACCAGTGCCCC
GTCACCACGAGAAACGACCACACGACCCCTTTCTGTGTGCTCACATCCCC
CGCAATATCTACAGCCGCCCTTTGTACCGATCGCACACAATCTGACGACA
AAAATCCCCTCCCCCGTCTGTGCTAGTTCGTGCATCATCGTGGTGCTAAC
GTGCTAACCGTCGGATCGGATGAAATTTCCTCGACGTTTTGGATCCGAAT
GACGTGCACATCAACATCGTGTTTGTACGTTGACCGACCAGGCTGTGGTT
TTGAGGGACATCGAATACTCGGAATTAGTGCGGGTGGAGATGCGCCGGCC
GCGCAAGATCGGGGAGAATCCGGTGTTGGCGAGCGTTGAGTTCGAGGTGA
GAGCACAAGAGGGCGGCGTTCGGAGAGGCGGCATTTGTATCTATTGGTGG
TCGTGTGCTACGTATAGGTCGTGTGTAATACGGTAAAAGCCCCTGTCTAG
TGGCTTGCGGCGGTACCCGGTATAGTGCTTGTGTTTTCTGGCGGGCACAC
GATAAATTTCCACGTCATTCTCGATACCTTGAATGGTTCCGGTCCGGTTT
AGCGCCGCTGAAATTTCTGGGCAGATTCCAGCACTATAATGCTGTACCTT
GCGTGTGTAGTCGCCATCGTATTGGCAAGGTGTTGCGTCCATCGGTCTGA
TGAGCAGTAGTACTAAAGCGTGGCAGCACGCGTAGTCGCCATTTTATTCG
CAGCTGCTGACGAAAATGATGCAGCAGGATTAGTGCAGGGCGGCATGTTC
CGAGAGGGAAGACATTTTTCGCAACCTTCAACATTTGTGCTGCAGTTGAA
AGTAGGCCTAGAGGACGCAGGGTGCTTGACCCCACCGAGTCGTTTTCTAC
ACGATACATCTGCTGTACATCTCATAGCCCGCTTGTCGACGACGGAGCAC
TGATGCCGCCTAAACTGCTACGTCGAAGTAACAAAAAATTCGGGTACTAT
GTGGTGTGGGCAGGTTCACGACGTGATCGGCCTGAGCCTTCGGGAGGGTG
CGTCGGTGTTTCAGCTCGAGTGCGACCGATCACGCGCGCGCTACGGGATA
ATCCTGCTTGCGTTCCGCTTCGACCCACCGGTGGCGGCCGACGTGCTCGG
AGCATTAGACGGGGTGGGGTTGGCGAGCTTGGTGAGTGCGAGGTGCAGCA
GTAGTGGCGATGAACGGTCGTCAGCACAGCCATCGCGAGGGGGTATTCGG
CTTGGTGTTGTTACAGCAGTAGGGGGGGTAGGGATAGGGATAGGGATACG
AAACCCCCCTCCTTTTCAAGGTTACTACTCTGAGTATTTCATGTATAGAT
TCACAACAATATCATTCTTCCAGAGTGGTGGCGGGGGCGATCACAACCCG
ATTGTTGATGGTTGGTGGCATCATACCGGTATGCATGTGAGCTTGCAGAC
GGAAGAGTCGGTGGTTGCAGGCAGGCAAGTCGGGCACCAGCTGCGGCGGG
CGGGACGACAGCGCAGCAGTTGGACGGAAGAAGAGATCAAAACTTGAGAG
GGCTATTATTCAGGTGTTCGTGCGATAAGCATCAGGGCGCAACGGTTTCT
GTCAAGCCTTTTTTGGCTGCCTCAACTCATTGTTCGGCACACTCACATGC
TCCACGCACAAGCGCGCGAGGACTTCGCACACCTGATACCGCATGCCCTT
CCCTATCCGTCCTGTTCTTTCTAGCGCTAATCCTGACTCGTCCCATCTTT
TTTTTTTTGTGGTTCCTTGCCGGCTGGTCTGTATTTTTCTTCAGCCGAGG
GGAGTAACAACGCCGGCTGACCAAGGAGACGAGGGGGAAAAAGCGCCGGC
ATGGGGGGCGCCTGAGGCGGGCCAGCAGGCGGAGAGGGAGGTGGAGGTCG
CAGAACCGGTGTACATCAACGTCGAGGGGCATTTTGCTTGCCTCCTTCTG
GACGACGACACTCCCCTTAACC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18393:4..3275+

>mRNA_Ecto-sp13_S_contig18393.5714.1 ID=mRNA_Ecto-sp13_S_contig18393.5714.1|Name=mRNA_Ecto-sp13_S_contig18393.5714.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=615bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18393:4..3275+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCAACAATTCATCAACCGGCGGTCCATCCGGCTCCAGTAGTGGCTCTAC
TGGCGGAGGCGGTCCTTGGGACACCAAGATCGTAGTGAGCCTTCCGAAAG
ACCCTATGGGGGAGAGACACGAGACAGGCAGGGCGGGGAAGACTTCGAAC
CCGGTGTGGGACCAGGCTGTGGTTTTGAGGGACATCGAATACTCGGAATT
AGTGCGGGTGGAGATGCGCCGGCCGCGCAAGATCGGGGAGAATCCGGTGT
TGGCGAGCGTTGAGTTCGAGGTTCACGACGTGATCGGCCTGAGCCTTCGG
GAGGGTGCGTCGGTGTTTCAGCTCGAGTGCGACCGATCACGCGCGCGCTA
CGGGATAATCCTGCTTGCGTTCCGCTTCGACCCACCGGTGGCGGCCGACG
TGCTCGGAGCATTAGACGGGGTGGGGTTGGCGAGCTTGCCGAGGGGAGTA
ACAACGCCGGCTGACCAAGGAGACGAGGGGGAAAAAGCGCCGGCATGGGG
GGCGCCTGAGGCGGGCCAGCAGGCGGAGAGGGAGGTGGAGGTCGCAGAAC
CGGTGTACATCAACGTCGAGGGGCATTTTGCTTGCCTCCTTCTGGACGAC
GACACTCCCCTTAAC
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