mRNA_Ecto-sp13_S_contig18392.5713.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig18392.5713.1
Unique NamemRNA_Ecto-sp13_S_contig18392.5713.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig18392.5713.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE)

HSP 1 Score: 335 bits (860), Expect = 3.070e-105
Identity = 168/184 (91.30%), Postives = 177/184 (96.20%), Query Frame = 1 
Query:    1 TTWTSSGTTNGFESIALPDTASGTVIELRGVLDDSEWLSIIETEIMVWPQNVVTPPPAPAATVPPATAPVQPVTPPSPTSAGDLQPVGLTPLAIGDESPIDRYGTKDGDFTTSWTCTGDATEPNDEGITYYQCELLFGLVYYRHIKQVKIALADGAQRSVDMRLAGRFASSIAEEFVTSSGATD 552
            TTWTSSGTTNGFESIALPDTASGTV+EL+GVLDDSEWLSIIETEIMVWPQNVVTPPPAPAATVPPATAPVQPVTPPSP  A DLQPVGLTPLAIG+ESP+DRY TKDGDFTTSWTCTGD TEPNDEGITYYQCEL FGLVYYRH+KQVK+ALADGA+RSVDMRLAGRF+SSIAEEFVTSSG T+
Sbjct:  460 TTWTSSGTTNGFESIALPDTASGTVVELQGVLDDSEWLSIIETEIMVWPQNVVTPPPAPAATVPPATAPVQPVTPPSPLPAADLQPVGLTPLAIGNESPLDRYATKDGDFTTSWTCTGDPTEPNDEGITYYQCELFFGLVYYRHVKQVKVALADGAERSVDMRLAGRFSSSIAEEFVTSSGTTN 643
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BLAST of mRNA_Ecto-sp13_S_contig18392.5713.1 vs. uniprot
Match: D7FZZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ4_ECTSI)

HSP 1 Score: 230 bits (586), Expect = 3.980e-67
Identity = 127/188 (67.55%), Postives = 141/188 (75.00%), Query Frame = 1 
Query:    4 TWTSSGTTNGFESIALPDTASGTVIELRGVLDDSEWLSIIETEIMVWPQNVVTPPPAPAATVP-----PATAPVQPVTPPSPTSAGDLQPVGLTPLAIGDESPIDRYGTKDGDFTTSWTCTGDATEPNDEGITYYQCELLFGLVYYRHIKQVKIALADGAQRSVDMRLAGRFASSIAEEFVTSSGATD 552
            TWTSSGTT+GFESIA PD  SGTVI L+GVLDDSEWLSIIETEIMVWPQNVVTPPP PA T       PAT      T P PT  GDLQPVGL PLA GD S +DR   KDGD +TSWTCTGD  E + +GI YY+C LLF LVY RHIKQVKIALADGA+R+VDM ++  + ++  EE VTSSG TD
Sbjct:  342 TWTSSGTTDGFESIAFPDGVSGTVINLQGVLDDSEWLSIIETEIMVWPQNVVTPPPTPATTAXXXXXQPAT------TSPIPTPVGDLQPVGLIPLATGDGSLLDRCAAKDGDLSTSWTCTGDPREVSPQGILYYECSLLFDLVYTRHIKQVKIALADGAERAVDMSISRGYGTT-PEELVTSSGTTD 522
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BLAST of mRNA_Ecto-sp13_S_contig18392.5713.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE)

HSP 1 Score: 155 bits (393), Expect = 1.400e-40
Identity = 100/193 (51.81%), Postives = 119/193 (61.66%), Query Frame = 1 
Query:    1 TTWTSSGTTNGFESIALPDTASGTVIELRGVLDDSEWLSIIETEIMVWPQNVVTPPPAPAATVPPATAPVQPVTPPSPTSAGDLQPVGLTPLA-----IGDESPIDRYGTKDGDFTTSWTCTGDATEPNDEGITYYQCELLFGLVYYRHIKQVKIALADGAQRSVDMRLAGRF----ASSIAEEFVTSSGATD 552
            TTWTSSGTT G ESI   DT SG V+E+ GVL DSEWLSIIET I VWP    TP    +    PA AP+ PV        G+L  VGL PLA      G++ P   + +KDGDF+TSWTC G             +C L F L  +RHIKQVKIAL DGA+R+VDMR+AGR+    A++ AE +VTSSG TD
Sbjct:  466 TTWTSSGTTVGAESILFSDTTSGQVVEVTGVLGDSEWLSIIETLIYVWPDTAPTPSTTGST---PAPAPITPV--------GELTAVGLLPLADCTGCFGEDLP--PFHSKDGDFSTSWTCVGGT-----------ECTLRFDLFSWRHIKQVKIALPDGAERAVDMRIAGRYDDELAAAFAEAYVTSSGTTD 634
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BLAST of mRNA_Ecto-sp13_S_contig18392.5713.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI)

HSP 1 Score: 155 bits (392), Expect = 1.910e-40
Identity = 93/183 (50.82%), Postives = 115/183 (62.84%), Query Frame = 1 
Query:    4 TWTSSGTTNGFESIALPDTASGTVIELRGVLDDSEWLSIIETEIMVWPQNVVTPPPAPAATVPPATAPVQPVTPPSPTSAGDLQPVGLTPLAIGDESPIDRYGTKDGDFTTSWTCTGDATEPNDEGITYYQCELLFGLVYYRHIKQVKIALADGAQRSVDMRLAGRFASSIAEEFVTSSGATD 552
            TWTSSGTT+GFE+I +  T SG V+E+ GVLDDSEWLSIIE EIM+         P P                   ++ G LQPVGL PLA    + +++Y  KDGD +TSWTC+GD  E +D    YY C L F +  +RHIKQVKIAL DGA+R+VDMR+A  + +S  E FVTSSG TD
Sbjct:  453 TWTSSGTTDGFEAIDMSGT-SGQVLEITGVLDDSEWLSIIEAEIMLLEDGAS---PTPTTXXXXXXXXXXXXXXXXXSTTGTLQPVGLIPLASTGGTSLEKYHIKDGDMSTSWTCSGDPQEADDP---YYDCILQFNMFSHRHIKQVKIALPDGAERAVDMRIAAPYDASFGEVFVTSSGTTD 628
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BLAST of mRNA_Ecto-sp13_S_contig18392.5713.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.280e-37
Identity = 95/187 (50.80%), Postives = 116/187 (62.03%), Query Frame = 1 
Query:    1 TTWTSSGTTNGFESIALPDTASGTVIELRGVLDDSEWLSIIETEIMVWPQNVVTPPPAPAATVPPATAPVQPVTPPSPTSAGDLQPVGLTPLAIGDESPIDRYGTKDGDFTTSWTCTGDATEPNDEGITYYQCELLFGLVYYRHIKQVKIALADGAQRSVDMRLAGRFASSIA---EEFVTSSGATD 552
            TTWTSSGTT+GFE+I L  T  G V+E+ GVLDDSEWLSIIE EIMV         P P                   ++ G LQPVGL PLA    + ++RY  KDGD +TSWTC+G+  E  D   T Y C L F +  +R+IKQVKIAL DGA+R+VDMR+A  ++S+ A   E FVTSSG TD
Sbjct:  265 TTWTSSGTTDGFEAIDLSGTW-GQVLEITGVLDDSEWLSIIEAEIMVLEDGAS---PMPTTPXXXXXXXXXXXXXXXTSTTGTLQPVGLIPLASTGGTSLERYHVKDGDMSTSWTCSGNPQETAD---TSYDCILQFSMFCHRNIKQVKIALPDGAERAVDMRIAAPYSSNSASFEEIFVTSSGTTD 444
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BLAST of mRNA_Ecto-sp13_S_contig18392.5713.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI)

HSP 1 Score: 65.5 bits (158), Expect = 3.610e-9
Identity = 41/74 (55.41%), Postives = 51/74 (68.92%), Query Frame = 1 
Query:    1 TTWTSSGTTNGFESIALPDTASGTVIELRGV-LDDSEWLSIIETEIMVWPQNVVTPPPAPAA------TVPPAT 201
            TTWTSSGTT+GFES+ +   A+G V+ + G  L DSEWLSI+ETEIMV+  N V PPP+P        T+PP T
Sbjct:  275 TTWTSSGTTSGFESVDMSG-ATGQVVTITGAELSDSEWLSIVETEIMVY--NGVAPPPSPTTPATPSPTLPPTT 345
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BLAST of mRNA_Ecto-sp13_S_contig18392.5713.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 1.190e-6
Identity = 31/47 (65.96%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:    1 TTWTSSGTTNGFESIALPDTASGTVIELRGVLDDSEWLSIIETEIMV 141
            TTWTSSGTT GFES+ L D   G V+EL G L+D EWLSI+E EI V
Sbjct:  123 TTWTSSGTTTGFESVLLMD--QGQVVELVGDLNDDEWLSILEVEIDV 167
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig18392.5713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KFA6_9PHAE3.070e-10591.30F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
D7FZZ4_ECTSI3.980e-6767.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KL74_9PHAE1.400e-4051.81F5/8 type C domain-containing protein n=3 Tax=Ecto... [more]
D7FTH1_ECTSI1.910e-4050.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KH45_9PHAE2.280e-3750.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FL48_ECTSI3.610e-955.41Leucine rich repeat carbohydrate binding protein n... [more]
A0A6H5L1V3_9PHAE1.190e-665.96F5/8 type C domain-containing protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig18392contigEcto-sp13_S_contig18392:1142..2942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score65.9
Seed ortholog evalue2.3e-08
Seed eggNOG ortholog2880.D7FL48
Model size553
Hectar predicted targeting categoryother localisation
Exons5
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
Ec32 ortholog descriptionPectin lyase fold protein
Ec32 orthologEc-22_003520.1
Cds size552
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.3425446-CDS-Ecto-sp13_S_contig18392:1141..12671681462945.3425446-CDS-Ecto-sp13_S_contig18392:1141..1267Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18392 1142..1267 +
1681462945.3527327-CDS-Ecto-sp13_S_contig18392:1530..17221681462945.3527327-CDS-Ecto-sp13_S_contig18392:1530..1722Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18392 1531..1722 +
1681462945.3702304-CDS-Ecto-sp13_S_contig18392:2095..22281681462945.3702304-CDS-Ecto-sp13_S_contig18392:2095..2228Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18392 2096..2228 +
1681462945.3812304-CDS-Ecto-sp13_S_contig18392:2668..27301681462945.3812304-CDS-Ecto-sp13_S_contig18392:2668..2730Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18392 2669..2730 +
1681462945.3902836-CDS-Ecto-sp13_S_contig18392:2902..29411681462945.3902836-CDS-Ecto-sp13_S_contig18392:2902..2941Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig18392 2903..2941 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig18392.5713.1prot_Ecto-sp13_S_contig18392.5713.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig18392 1142..2941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig18392.5713.1

>prot_Ecto-sp13_S_contig18392.5713.1 ID=prot_Ecto-sp13_S_contig18392.5713.1|Name=mRNA_Ecto-sp13_S_contig18392.5713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=184bp
TTWTSSGTTNGFESIALPDTASGTVIELRGVLDDSEWLSIIETEIMVWPQ
NVVTPPPAPAATVPPATAPVQPVTPPSPTSAGDLQPVGLTPLAIGDESPI
DRYGTKDGDFTTSWTCTGDATEPNDEGITYYQCELLFGLVYYRHIKQVKI
ALADGAQRSVDMRLAGRFASSIAEEFVTSSGATD
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mRNA from alignment at Ecto-sp13_S_contig18392:1142..2942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig18392.5713.1 ID=mRNA_Ecto-sp13_S_contig18392.5713.1|Name=mRNA_Ecto-sp13_S_contig18392.5713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1801bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18392:1142..2942+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCACCTGGACCAGCTCCGGCACGACGAACGGCTTCGAGAGCATCGCGCT
CCCAGACACTGCTTCCGGGACGGTGATCGAGCTCCGAGGCGTCTTGGACG
ACTCGGAGTGGCTCAGCATCATCGAGGTTGGTTTTCTGCAGTTCGACCCA
AACACACACACATGGTACTTGTGTAGCATTGTGCTGAGCCCCAAGGACTT
GTATTTTCATTTCGAAGCAAGAGCACTAAGCAACACAAACAGAGGCGTAC
GTCTAGAGACTGTAGCCCACCCTTGAAACAGCAAATGGGCACTTGCTTGA
TTGACCGACATCGATCAGCGACTCTCACGCCTCACTTATCTCGCCGCCGT
CCGTGTGTCCTATTTGCCTACTTGCTTGTCACCGAACAGACGGAGATCAT
GGTGTGGCCACAGAATGTCGTCACGCCGCCGCCCGCCCCAGCGGCGACCG
TTCCTCCCGCTACCGCTCCGGTCCAACCAGTGACGCCGCCCAGCCCTACG
TCTGCGGGCGACCTGCAACCTGTCGGCCTGACGCCCCTGGCTATTGGGGA
TGAGTCGCCGATTGACCGCTACGGAACCAAGGTGCGTCTGCAGAGGCGAG
CACGTCAGCCCGCTGAGCATGGGTACTTTAAACCATATTATATGTTGGGG
GAGGATTTTCCGTCGCTGCTGCCGTGCCTAGGACACGTCTGCCGTAGTCT
CGTGATGATCGCGACTTGTCGCGAAGCTCACTAAGGTGGATGCTTCCGGG
AAGCTCACTAAGGTGGATACTTCCTCCCCATGTTGGACATTTGATTGAGA
TGTTGGAGACCATTGGAAACATCGTGGTTGGATTGCCTGTCGAGACCAAC
CATTTGTCTTGGCACCGAAAGCGTGCCTCTCCAAAGAAGAATGACAGACT
GCACGCGAATTGTGTTTTGTCGCCGTTCTTTTGTCTGCTCTCTCCCTTGG
CCAGGACGGGGACTTCACCACGTCCTGGACGTGTACGGGCGACGCCACGG
AGCCGAACGACGAAGGCATCACGTACTACCAATGCGAGCTCCTCTTCGGC
CTCGTGTACTACCGCCATATCAAGCAGGTCAAAATCGGTAAGACTTCGAT
TTTTGTGGCGCATCTCGGATACGTCGGGTTTCTAAGCACCCAGTCGGTTA
TCCGTTGACCTGCCGACGATGCATTCACACAACCAATGGTATCAATTGCC
CACGTCGGGCTTCAAAGCGTGCTGAGCTGCAAGCGGGTCCCCGCGCAACC
AAACCTGCCGAAATGAACCTCCCTTTCCAGCCGTCGTCGCCACCCTCTAC
CCCGTGTGTGACGTAACAATATTTCGTGAAGAAACAGAGGCTACTAGTTT
TTCTGGTCGTGAGACACATGGCGCAGCGGTGGGTCCTACACTAATCTCTA
CTTCGAAGTGAATAGCAACCTGTGCTCGACGGTGGCGACGAAATGAGAAG
TCGAACCCGATTTTGACGTTTCTTATTTCCGTGCCCATGCTGTACTTTGT
GTCGGTCTTCTTGGTCCGCTTGTCAAGCCCTTGCCGACGGCGCCCAACGT
TCGGTGGACATGAGGCTAGCTGGCCGTTTCGCGAGCTCGGTGAGCCAACT
CCGGGTGTCGTATTTTGTGGGGGTTGTTATTTTGTGTCGTATAAGGAAGC
CAACCCGTTGGGCTGGCCCGTACCGGCTCGCCGAGGTCCTGGACTCCGCT
GCTTTCCCTTCCCCTTGGCGTTGACTGTGACGTTGTACATATCCTCTGGC
CATTGAAACAGATCGCTGAGGAGTTCGTGACGAGCTCGGGAGCGACCGAC
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig18392:1142..2942+

>mRNA_Ecto-sp13_S_contig18392.5713.1 ID=mRNA_Ecto-sp13_S_contig18392.5713.1|Name=mRNA_Ecto-sp13_S_contig18392.5713.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=552bp|location=Sequence derived from alignment at Ecto-sp13_S_contig18392:1142..2942+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACCACCTGGACCAGCTCCGGCACGACGAACGGCTTCGAGAGCATCGCGCT
CCCAGACACTGCTTCCGGGACGGTGATCGAGCTCCGAGGCGTCTTGGACG
ACTCGGAGTGGCTCAGCATCATCGAGACGGAGATCATGGTGTGGCCACAG
AATGTCGTCACGCCGCCGCCCGCCCCAGCGGCGACCGTTCCTCCCGCTAC
CGCTCCGGTCCAACCAGTGACGCCGCCCAGCCCTACGTCTGCGGGCGACC
TGCAACCTGTCGGCCTGACGCCCCTGGCTATTGGGGATGAGTCGCCGATT
GACCGCTACGGAACCAAGGACGGGGACTTCACCACGTCCTGGACGTGTAC
GGGCGACGCCACGGAGCCGAACGACGAAGGCATCACGTACTACCAATGCG
AGCTCCTCTTCGGCCTCGTGTACTACCGCCATATCAAGCAGGTCAAAATC
GCCCTTGCCGACGGCGCCCAACGTTCGGTGGACATGAGGCTAGCTGGCCG
TTTCGCGAGCTCGATCGCTGAGGAGTTCGTGACGAGCTCGGGAGCGACCG
AC
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