mRNA_Ecto-sp13_S_contig1839.5710.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1839.5710.1
Unique NamemRNA_Ecto-sp13_S_contig1839.5710.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1839.5710.1 vs. uniprot
Match: D8LSN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSN9_ECTSI)

HSP 1 Score: 479 bits (1234), Expect = 1.330e-168
Identity = 258/317 (81.39%), Postives = 260/317 (82.02%), Query Frame = 1 
Query:    1 MRFSPCWHAATISLLQTCSVGEGRHVHHARDAPPLATPTGASPPLPVMAYAFSPSTRRALHPATTTTSSRRSSASKPRLGHRHLSATQGTTRMSEAARPGADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDPDWTLSRVPNPVGALLYAAEPEERAAEEMAALGEGAAALPCFRLGGTDGAAVVVDVASGHVVGVRVDPVSDNTAWEAAGSSAAMGIVAAAQQQLDGGGLVFLPGVPPSVWESGDMDTVLRIASSACAGAGKTLVXXXXXXXXXXXXXXXXXXXXXXMALLIEPMPELWEAGLLYL 951
            MRFSPCWHAATISLLQTCS GEGRHVHHARD PPLATPTGASPPLP+MAYAFSPSTRRALHPATTTTSSRRSSASKPRLGHRH SATQ TTRMSEAARPGADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPED DWTLSRVPNPVGALLYAAEPEERAAEEM ALGE AAALPCFRLGGTDG AVVVDV+SGHVVGVRVDPV DN A                       GLVFLPGV PSVWESGDM TVLRIASSACAGAGKTLV                      MALLIEPMPELWEAGLLYL
Sbjct:    1 MRFSPCWHAATISLLQTCSAGEGRHVHHARDPPPLATPTGASPPLPLMAYAFSPSTRRALHPATTTTSSRRSSASKPRLGHRHRSATQRTTRMSEAARPGADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDTDWTLSRVPNPVGALLYAAEPEERAAEEMVALGETAAALPCFRLGGTDGTAVVVDVSSGHVVGVRVDPVGDNAAGXXXXXXXXXXXXXXXXXXXXXXGLVFLPGVRPSVWESGDMGTVLRIASSACAGAGKTLVVTTTVLGVGGTGAAEDGTTPPPMALLIEPMPELWEAGLLYL 317
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1839.5710.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSN9_ECTSI1.330e-16881.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1839contigEcto-sp13_S_contig1839:10375..11385 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size954
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-15_003160.1
Cds size954
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462945.1698084-CDS-Ecto-sp13_S_contig1839:10374..104941681462945.1698084-CDS-Ecto-sp13_S_contig1839:10374..10494Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1839 10375..10494 -
1681462945.1791863-CDS-Ecto-sp13_S_contig1839:10551..113851681462945.1791863-CDS-Ecto-sp13_S_contig1839:10551..11385Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1839 10552..11385 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1839.5710.1prot_Ecto-sp13_S_contig1839.5710.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1839 10375..11385 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1839.5710.1

>prot_Ecto-sp13_S_contig1839.5710.1 ID=prot_Ecto-sp13_S_contig1839.5710.1|Name=mRNA_Ecto-sp13_S_contig1839.5710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=318bp
MRFSPCWHAATISLLQTCSVGEGRHVHHARDAPPLATPTGASPPLPVMAY
AFSPSTRRALHPATTTTSSRRSSASKPRLGHRHLSATQGTTRMSEAARPG
ADSGVALWLDMRTAVLPAAQTLKTLYGELRQREEALGRSPEDPDWTLSRV
PNPVGALLYAAEPEERAAEEMAALGEGAAALPCFRLGGTDGAAVVVDVAS
GHVVGVRVDPVSDNTAWEAAGSSAAMGIVAAAQQQLDGGGLVFLPGVPPS
VWESGDMDTVLRIASSACAGAGKTLVVTTTVLGAGGTGAAEGGTTPPPMA
LLIEPMPELWEAGLLYL*
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mRNA from alignment at Ecto-sp13_S_contig1839:10375..11385-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1839.5710.1 ID=mRNA_Ecto-sp13_S_contig1839.5710.1|Name=mRNA_Ecto-sp13_S_contig1839.5710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1011bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1839:10375..11385- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTTCAGTCCTTGTTGGCATGCCGCCACGATCTCGCTGCTTCAGAC
CTGCTCAGTAGGGGAGGGCCGTCACGTCCACCACGCACGAGACGCACCAC
CCCTTGCAACACCAACGGGAGCATCGCCACCACTCCCGGTGATGGCCTAC
GCGTTTTCCCCGTCAACAAGAAGAGCGCTACATCCAGCTACTACCACCAC
CTCCTCCCGGAGAAGCTCGGCCTCAAAGCCTCGCCTCGGCCACCGCCACC
TGTCCGCCACGCAGGGAACCACGCGGATGAGCGAGGCGGCACGCCCCGGC
GCCGACAGCGGCGTTGCCCTGTGGTTAGACATGCGCACCGCCGTTCTTCC
CGCCGCTCAGACCCTCAAGACGCTGTACGGCGAACTCCGGCAGAGGGAGG
AAGCTCTAGGGCGCAGCCCGGAGGATCCGGACTGGACCCTGAGCCGCGTG
CCGAACCCAGTCGGGGCGTTGCTCTACGCGGCGGAGCCGGAGGAAAGGGC
GGCGGAGGAGATGGCCGCACTCGGCGAGGGCGCGGCGGCGCTCCCGTGCT
TTCGGCTAGGCGGCACCGACGGCGCAGCAGTAGTGGTGGACGTTGCGAGC
GGGCACGTTGTAGGGGTTAGGGTCGACCCCGTCAGCGACAACACCGCCTG
GGAGGCTGCGGGTAGTTCGGCGGCCATGGGCATTGTCGCGGCGGCACAGC
AGCAGCTCGACGGCGGCGGCCTCGTGTTTCTGCCGGGGGTGCCGCCGTCT
GTCTGGGAGAGCGGGGACATGGACACGGTTCTCCGGATTGCCTCGAGCGC
CTGTGCCGGGGCCGGGAAGACGCTCGTCGTCACGGTGAGGAGCGTGGGGC
AGCTGCACGAAGCGGCCATGGCGGCGTTTGCGGCGTCGCAGACAACAGTG
CTCGGGGCGGGCGGGACGGGCGCGGCCGAGGGCGGCACTACTCCTCCGCC
GATGGCGTTGCTCATTGAGCCCATGCCCGAGCTTTGGGAAGCTGGGTTGC
TGTACCTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1839:10375..11385-

>mRNA_Ecto-sp13_S_contig1839.5710.1 ID=mRNA_Ecto-sp13_S_contig1839.5710.1|Name=mRNA_Ecto-sp13_S_contig1839.5710.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=954bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1839:10375..11385- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAGGTTCAGTCCTTGTTGGCATGCCGCCACGATCTCGCTGCTTCAGAC
CTGCTCAGTAGGGGAGGGCCGTCACGTCCACCACGCACGAGACGCACCAC
CCCTTGCAACACCAACGGGAGCATCGCCACCACTCCCGGTGATGGCCTAC
GCGTTTTCCCCGTCAACAAGAAGAGCGCTACATCCAGCTACTACCACCAC
CTCCTCCCGGAGAAGCTCGGCCTCAAAGCCTCGCCTCGGCCACCGCCACC
TGTCCGCCACGCAGGGAACCACGCGGATGAGCGAGGCGGCACGCCCCGGC
GCCGACAGCGGCGTTGCCCTGTGGTTAGACATGCGCACCGCCGTTCTTCC
CGCCGCTCAGACCCTCAAGACGCTGTACGGCGAACTCCGGCAGAGGGAGG
AAGCTCTAGGGCGCAGCCCGGAGGATCCGGACTGGACCCTGAGCCGCGTG
CCGAACCCAGTCGGGGCGTTGCTCTACGCGGCGGAGCCGGAGGAAAGGGC
GGCGGAGGAGATGGCCGCACTCGGCGAGGGCGCGGCGGCGCTCCCGTGCT
TTCGGCTAGGCGGCACCGACGGCGCAGCAGTAGTGGTGGACGTTGCGAGC
GGGCACGTTGTAGGGGTTAGGGTCGACCCCGTCAGCGACAACACCGCCTG
GGAGGCTGCGGGTAGTTCGGCGGCCATGGGCATTGTCGCGGCGGCACAGC
AGCAGCTCGACGGCGGCGGCCTCGTGTTTCTGCCGGGGGTGCCGCCGTCT
GTCTGGGAGAGCGGGGACATGGACACGGTTCTCCGGATTGCCTCGAGCGC
CTGTGCCGGGGCCGGGAAGACGCTCGTCGTCACGACAACAGTGCTCGGGG
CGGGCGGGACGGGCGCGGCCGAGGGCGGCACTACTCCTCCGCCGATGGCG
TTGCTCATTGAGCCCATGCCCGAGCTTTGGGAAGCTGGGTTGCTGTACCT
TTGA
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